BAC Information

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BAC

Clone NameB6Ng01-106B10
Chromosome18 (Build37)
Map Location 34,946,228 - 35,106,932
singlet/doubletdoublet
Overlap geneJmjd1b, Reep2, Egr1, Etf1, Hspa9
Upstream geneLOC100041258, Epb4.1l4a, EG666296, Ppia-ps18_318.1, Ppia-ps18_319.1, LOC666313, Apc, Srp19, Reep5, Pkd2l2, 2610024E20Rik, Wnt8a, Nme5, 4933408B17Rik, Brd8, Kif20a, Cdc23, Gfra3, Cdc25c, LOC100041859, 2810012G03Rik, LOC100041879, LOC100041887
Downstream geneLOC100041377, EG626954, LOC100041951, Ctnna1, Lrrtm2, Sil1, LOC100041423, LOC666460, LOC666462, EG383341, EG436583, Matr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5, LOC100042131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106B10.bB6Ng01-106B10.g
ACCDH913927DH913928
length1,102840
definitionDH913927|Mus musculus domesticus DNA, BAC clone: B6Ng01-106B10, 5' end.DH913928|Mus musculus domesticus DNA, BAC clone: B6Ng01-106B10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,105,812 - 35,106,932)(34,946,228 - 34,947,067)
sequence
gaattcaaaaaatccgcctgcctttgcctttgctgggattaaaggcgtgc
gccaccactgcctagctggatacagtttctttatgtagctctagctatcc
tggagctccctttgtaagccaggctattcccaaactcagagatttgcctg
cctccctctcccctgggataaaggtgtacactaccaccacctgacttgtg
ctgtaaatgtaacctgaactgtgaactaaattatgacagctataacattt
ttcctagagcattactgtttcagagggtgaaagtattgtgcttagacaaa
aaaaaaaagtactttattctctgcaaatctgtttgtatgatcactaattc
atgaccattttactgttcattttagaccttgatagttttttttatatgtt
gacaaatactttggaaatcatagttggtgtgttactaattttacttgttt
ctgtatgacatgcttatatgatacgttaacaggcatgccacttaggttga
taactacattcagttattaagtatttcaggaaatatcatagttaataatt
aaacttttggtcttttaattcgttcctttgttttgttccttggaacttaa
cttacttatttattttttagcattgctgtgtatgatttaggtggtggaac
ctttgacatttctatcctggaaattcagaaaggagtgtttgaggtgaaat
ctaccaatggggacactttcttaggaggggaagactttgaccaagctttg
ttgcggcacattgtcaaggagttcaagagagaggttagtcaccactggtt
agttaccactgcttagtcaccactggttaaggtgtaggcgttgggttgtt
gagaattttgtttgtttgcattgcttttagctttgttatagctttttata
ctaaggtaactaactatacttcagattcatggtaaactaaactgtttagt
tatataatcttagattgtgaacaaagacaagtgacagtggttataagtat
tgagaggattttagactctgaaaacaaaccttgagctgtcagagtgatgg
agtcagtctactgacatgggtcgataattatattttggtattttctaaca
ta
gaattcatgacctcggaagagcaagcagccagtgctcttaaccactgagc
cacctctccagcccatatcctgttattcctatctctgaattctcaagtat
actttacattcatacactcttactggtgtttttcatcttatttctttgta
aatggtatttcctacagatcacacccttaaaagtttatcttttaagccta
atccaaatttaatttttccccataaaaattggttacataaataataagtg
aaatacacttattgaagagaaaaaaatcatgttttatacccataaatact
tgtttcagccgtaactagagaaacctcttttcagtgaacttctgtgaata
tacaaactcatggcagcacaaggtgctgagaataaaggatgatgttcatc
catccctaaagaagacatttatacagtcccctctgagcttggagagcaga
gtgggagaagggacagaaaggatgtaagcgcctcgaaggcagggagaagg
gttgtgaaataacattgtctctggcaagacacagcaaacctttgcaatca
tgaattcgtggacctgcagttacttgtactgggtttgcaccaggagtcag
gtgtagaagaaggaggggctttgggcttatagaccatactcttcattgaa
tattggctactgaaaggtttagggaggggggaactcgttgctcccagttg
tatacccgctggtgaccccactaggctctagcagatagttccagtccaga
ggtggccctggtaaaataaatgggtcacaaaacaaaagtcatgaatctga
aagactctgctggggaggagtgtgaagtatggttaggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_35105812_35106932
seq2: B6Ng01-106B10.b_45_1146 (reverse)

seq1  TATG-TAGAAAATAACCAAATAATAATTTATCGGACCCATGTCAGTAGAC  49
      |||| |||||||| ||||||  |||| ||||| |||||||||||||||||
seq2  TATGTTAGAAAAT-ACCAAAATATAA-TTATC-GACCCATGTCAGTAGAC  47

seq1  TGAACTCCCATCAACTCTGCCAAGCTCAAGGTTTTGTTTTTCAGAGTTCC  99
      || ||| ||||| |||||| | ||||||||||||   ||||||||||  |
seq2  TG-ACT-CCATC-ACTCTGAC-AGCTCAAGGTTT--GTTTTCAGAGT--C  89

seq1  TAAAATTCCTTCTCCAATAC-TATAACCACTGTCACTTGGTCTTTTGTTC  148
      ||||||  | ||| |||||| ||||||||||||||||| ||| |||||||
seq2  TAAAAT--CCTCT-CAATACTTATAACCACTGTCACTT-GTC-TTTGTTC  134

seq1  CCAATCTAAGATTATATAACTAAACTGGTTTAGTTTACCCATGAATCTGA  198
       ||||||||||||||||||||||||  |||||||||| ||||||||||||
seq2  ACAATCTAAGATTATATAACTAAAC-AGTTTAGTTTA-CCATGAATCTGA  182

seq1  AGTATAGTTAGTTACCTTAGTATAAAAAAGCTATTAACAAAGCTAAAAGC  248
      ||||||||||||||||||||||| ||||||||| ||||||||||||||||
seq2  AGTATAGTTAGTTACCTTAGTAT-AAAAAGCTA-TAACAAAGCTAAAAGC  230

seq1  AATGCAAACAAACAAAAATTCTCAACAACCCAACGCCTACACCTTAACCA  298
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AATGCAAACAAAC-AAAATTCTCAACAACCCAACGCCTACACCTTAACCA  279

seq1  GTGGTGACTAAGCAGTGGTAACTAACCAGTGGTGACTAACCTCTCTCTTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGACTAAGCAGTGGTAACTAACCAGTGGTGACTAACCTCTCTCTTG  329

seq1  AACTCCTTGACAATGTGCCGCAACAAAGCTTGGTCAAAGTCTTCCCCTCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTTGACAATGTGCCGCAACAAAGCTTGGTCAAAGTCTTCCCCTCC  379

seq1  TAAGAAAGTGTCCCCATTGGTAGATTTCACCTCAAACACTCCTTTCTGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAGTGTCCCCATTGGTAGATTTCACCTCAAACACTCCTTTCTGAA  429

seq1  TTTCCAGGATAGAAATGTCAAAGGTTCCACCACCTAAATCATACACAGCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGGATAGAAATGTCAAAGGTTCCACCACCTAAATCATACACAGCA  479

seq1  ATGCTAAAAAATAAATAAGTAAGTTAAGTTCCAAGGAACAAAACAAAGGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAAAAAATAAATAAGTAAGTTAAGTTCCAAGGAACAAAACAAAGGA  529

seq1  ACGAATTAAAAGACCAAAAGTTTAATTATTAACTATGATATTTCCTGAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAATTAAAAGACCAAAAGTTTAATTATTAACTATGATATTTCCTGAAA  579

seq1  TACTTAATAACTGAATGTAGTTATCAACCTAAGTGGCATGCCTGTTAACG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAATAACTGAATGTAGTTATCAACCTAAGTGGCATGCCTGTTAACG  629

seq1  TATCATATAAGCATGTCATACAGAAACAAGTAAAATTAGTAACACACCAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATATAAGCATGTCATACAGAAACAAGTAAAATTAGTAACACACCAA  679

seq1  CTATGATTTCCAAAGTATTTGTCAACATATAAAAAAAACTATCAAGGTCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGATTTCCAAAGTATTTGTCAACATATAAAAAAAACTATCAAGGTCT  729

seq1  AAAATGAACAGTAAAATGGTCATGAATTAGTGATCATACAAACAGATTTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAACAGTAAAATGGTCATGAATTAGTGATCATACAAACAGATTTG  779

seq1  CAGAGAATAAAGTACTTTTTTTTTTTGTCTAAGCACAATACTTTCACCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAATAAAGTACTTTTTTTTTTTGTCTAAGCACAATACTTTCACCCT  829

seq1  CTGAAACAGTAATGCTCTAGGAAAAATGTTATAGCTGTCATAATTTAGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACAGTAATGCTCTAGGAAAAATGTTATAGCTGTCATAATTTAGTT  879

seq1  CACAGTTCAGGTTACATTTACAGCACAAGTCAGGTGGTGGTAGTGTACAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTCAGGTTACATTTACAGCACAAGTCAGGTGGTGGTAGTGTACAC  929

seq1  CTTTATCCCAGGGGAGAGGGAGGCAGGCAAATCTCTGAGTTTGGGAATAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCCCAGGGGAGAGGGAGGCAGGCAAATCTCTGAGTTTGGGAATAG  979

seq1  CCTGGCTTACAAAGGGAGCTCCAGGATAGCTAGAGCTACATAAAGAAACT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTTACAAAGGGAGCTCCAGGATAGCTAGAGCTACATAAAGAAACT  1029

seq1  GTATCCAGCTAGGCAGTGGTGGCGCACGCCTTTAATCCCAGCAAAGGCAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCAGCTAGGCAGTGGTGGCGCACGCCTTTAATCCCAGCAAAGGCAA  1079

seq1  AGGCAGGCGGATTTTTTGAATTC  1121
      |||||||||||||||||||||||
seq2  AGGCAGGCGGATTTTTTGAATTC  1102

seq1: chr18_34946228_34947067
seq2: B6Ng01-106B10.g_71_910

seq1  GAATTCATGACCTCGGAAGAGCAAGCAGCCAGTGCTCTTAACCACTGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGACCTCGGAAGAGCAAGCAGCCAGTGCTCTTAACCACTGAGC  50

seq1  CACCTCTCCAGCCCATATCCTGTTATTCCTATCTCTGAATTCTCAAGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTCCAGCCCATATCCTGTTATTCCTATCTCTGAATTCTCAAGTAT  100

seq1  ACTTTACATTCATACACTCTTACTGGTGTTTTTCATCTTATTTCTTTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACATTCATACACTCTTACTGGTGTTTTTCATCTTATTTCTTTGTA  150

seq1  AATGGTATTTCCTACAGATCACACCCTTAAAAGTTTATCTTTTAAGCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTATTTCCTACAGATCACACCCTTAAAAGTTTATCTTTTAAGCCTA  200

seq1  ATCCAAATTTAATTTTTCCCCATAAAAATTGGTTACATAAATAATAAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAATTTAATTTTTCCCCATAAAAATTGGTTACATAAATAATAAGTG  250

seq1  AAATACACTTATTGAAGAGAAAAAAATCATGTTTTATACCCATAAATACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACACTTATTGAAGAGAAAAAAATCATGTTTTATACCCATAAATACT  300

seq1  TGTTTCAGCCGTAACTAGAGAAACCTCTTTTCAGTGAACTTCTGTGAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAGCCGTAACTAGAGAAACCTCTTTTCAGTGAACTTCTGTGAATA  350

seq1  TACAAACTCATGGCAGCACAAGGTGCTGAGAATAAAGGATGATGTTCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACTCATGGCAGCACAAGGTGCTGAGAATAAAGGATGATGTTCATC  400

seq1  CATCCCTAAAGAAGACATTTATACAGTCCCCTCTGAGCTTGGAGAGCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTAAAGAAGACATTTATACAGTCCCCTCTGAGCTTGGAGAGCAGA  450

seq1  GTGGGAGAAGGGACAGAAAGGATGTAAGCGCCTCGAAGGCAGGGAGAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGAAGGGACAGAAAGGATGTAAGCGCCTCGAAGGCAGGGAGAAGG  500

seq1  GTTGTGAAATAACATTGTCTCTGGCAAGACACAGCAAACCTTTGCAATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGAAATAACATTGTCTCTGGCAAGACACAGCAAACCTTTGCAATCA  550

seq1  TGAATTCGTGGACCTGCAGTTACTTGTACTGGGTTTGCACCAGGAGTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCGTGGACCTGCAGTTACTTGTACTGGGTTTGCACCAGGAGTCAG  600

seq1  GTGTAGAAGAAGGAGGGGCTTTGGGCTTATAGACCATACTCTTCATTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGAAGAAGGAGGGGCTTTGGGCTTATAGACCATACTCTTCATTGAA  650

seq1  TATTGGCTACTGAAAGGTTTAGGGAGGGGGGAACTCGTTGCTCCCAGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGCTACTGAAAGGTTTAGGGAGGGGGGAACTCGTTGCTCCCAGTTG  700

seq1  TATACCCGCTGGTGACCCCACTAGGCTCTAGCAGATAGTTCCAGTCCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCCGCTGGTGACCCCACTAGGCTCTAGCAGATAGTTCCAGTCCAGA  750

seq1  GGTGGCCCTGGTAAAATAAATGGGTCACAAAACAAAAGTCATGAATCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCCCTGGTAAAATAAATGGGTCACAAAACAAAAGTCATGAATCTGA  800

seq1  AAGACTCTGCTGGGGAGGAGTGTGAAGTATGGTTAGGAGA  840
      ||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCTGCTGGGGAGGAGTGTGAAGTATGGTTAGGAGA  840