BAC Information

Click to search

BAC

Clone NameB6Ng01-106I17
Chromosome18 (Build37)
Map Location 68,739,186 - 68,740,384
singlet/doubletsinglet
Overlap genenone
Upstream geneCep76, Tnfsf5ip1, Ptpn2, Seh1l, LOC667939, D18Ertd653e, 4933403F05Rik, Rnmt, Mc5r, Mc2r
Downstream geneLOC100043380, EG225681, Tcf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106I17.bB6Ng01-106I17.g
ACCDH914252DH914253
length1,1681,182
definitionDH914252|Mus musculus domesticus DNA, BAC clone: B6Ng01-106I17, 5' end.DH914253|Mus musculus domesticus DNA, BAC clone: B6Ng01-106I17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccaaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatgaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatcctgcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagatgctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactatcagttattaaaaagaatgaatttatgaaattcctaggcaaa
tggatggacatggagggtatcatcctgagtgaggtaacccaatcacaaaa
gaactcgcataatatgtactcactgataagtggatattagcccagaaact
taggatacacaagatataagatacaatttgctaaacgcatgaaactcaag
aagaacgaagacgaaagtgtggacactttgttccttcctagaaatgggaa
caaaacacccatagaaggagttacagagacaaaatttggagctgtgacaa
aaggatggaccatctagtgattgccatatccagggatccatcccataatc
agcttccaaacgctgacaccattgcatacactagcaagattttgctgtaa
ggacccagatatagctgtctcttgtgagactatgccgggcctagcaaaca
cagaagtggatgctcacagtcagctattggatgggtcacacggtcccaat
ggaggagctagagaaagtacccaagagctaaaggaactgcaccctgtatg
tggaacaacaatatgaactaaccagtaccccgagctcttgtctctagctg
catatgtatcaaagatgctagtcagccatcactggaagagaggccctttg
acttgcaacttatatgctcaatatcaggaaacgctaggctaaaaggggaa
gtgggtgtatataggcct
gaattcacagaagggaataaccctaaaccctgaccatgtctccatccttg
ccttctacacaaaggtgtgtgcggcaagcacacacatgcacatacacaca
tatacatacacacagacacacacacacagagacacagagctacacgatct
cacacacattttgtttgttcttttagttttgttctgtttggcttttagac
acagggtttatctgtgtagccctggctgtcctggaactcactatgtagac
caggatggcctcaaactcacagagatccacctgcctctgcctccaggttg
ctggaattaaaggcgtgcgccaccataagctcacactcattcatatacat
acactctttcacacagactccttcacatacctacacacccttacatactt
caaagcatagccactaaaacacttactgacaccctcacacggtcacatca
gtctcccacacactcacacaccctaccacaccccacacttgttcacactc
tccctcactgactttcacactccttcacacattacgatatgttcccacac
ccctataccaacactcattcatatgtgttcatatatctttagatccactt
gaaggcccctagttcatgacttccctaatcattttaggagataagaaagg
gaaattttcttagagagtattgcagaccccatccttggggacccaaacgg
aggcaaataagaaataacaggaaagaagagtcacgataaggtggggccag
cattaattctcgctcgggggcccttcctatactacccaatgtctgagctt
gcaactaccaccagcactagaatttctcaatttctaagagtacagttacc
actggctctaagtaagatgttttataatacaaagggaaagaatgctgggg
tcacacattagtagcatggcaaaatacatactatatcccccataaaacat
ccaggctaccacacatatgcacagggggcttctctggttatttaaatagc
atcaactcaatacataaagtattaacaacaaacaacagctttgtgtcact
tgaaattgtgacaccctgaatacaatgtcgtgacaccagcattcaaggag
aatcactgttctatcttagaaagaatttattcagttccgaatccaaagga
agcatcatctcactatttaagctagacaaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_68739186_68740384
seq2: B6Ng01-106I17.g_67_1248 (reverse)

seq1  GTTTTGTCTAGCCTTAAATAGT-AGATGATGTCTTCCTTTTGAATTCTGG  49
      ||||||||||| |||||||||| |||||||| ||||| |||| |||| ||
seq2  GTTTTGTCTAG-CTTAAATAGTGAGATGATG-CTTCC-TTTGGATTC-GG  46

seq1  GACTGAAATAAAATCCTTTCTAAGGATAGGACAGTGATTTCTCTTTGAAT  99
       ||||||   |||| |||||||| ||||| ||||||| ||||| ||||||
seq2  AACTGAA--TAAATTCTTTCTAA-GATAGAACAGTGA-TTCTCCTTGAAT  92

seq1  GCTGGTGTCACTGACATTGTATTCAGGGTGGTCACATATTTCAAGTGACA  149
      ||||||||||| ||||||||||||||||| |||||| |||||||||||||
seq2  GCTGGTGTCAC-GACATTGTATTCAGGGT-GTCACA-ATTTCAAGTGACA  139

seq1  CAAAGCTGTTTGTTTGTTTGTTTTAATACTTTATGTATTGAGTTGATGCT  199
      |||||||| ||||||||   | ||||||||||||||||||||||||||||
seq2  CAAAGCTG-TTGTTTGT---TGTTAATACTTTATGTATTGAGTTGATGCT  185

seq1  ATTTAAATAACCAGAGAAGCCCCTGGTGCATATGTGTGGTAGCCTGGATG  249
      |||||||||||||||||||||||  |||||||||||||||||||||||||
seq2  ATTTAAATAACCAGAGAAGCCCCCTGTGCATATGTGTGGTAGCCTGGATG  235

seq1  GTTTTTATGGGGGATATAGTATGTA-TTTGCCATGCTACCTAATGTGTGA  298
        ||||||||||||||||||||||| |||||||||||| |||||||||||
seq2  --TTTTATGGGGGATATAGTATGTATTTTGCCATGCTA-CTAATGTGTGA  282

seq1  CCCCAGCATTCTTTCCC-TTGTATTTATAAAACATCTTACCTTAGAGCCA  347
      ||||||||||||||||| ||||| ||||||||||||||| ||||||||||
seq2  CCCCAGCATTCTTTCCCTTTGTA-TTATAAAACATCTTA-CTTAGAGCCA  330

seq1  GTGGTAACTGTACTCTTAGAAATTGAGAAATTCTAGTGCTGGTGGTAGTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAACTGTACTCTTAGAAATTGAGAAATTCTAGTGCTGGTGGTAGTT  380

seq1  GCAAGCTCAGACATTGGGTAGTATAGGAAGGGCCCCCGAGCGAGAATTAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCTCAGACATTGGGTAGTATAGGAAGGGCCCCCGAGCGAGAATTAA  430

seq1  TGCTGGCCCCACCTTATCGTGACTCTTCTTTCCTGTTATTTCTTATTTGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCCCCACCTTATCGTGACTCTTCTTTCCTGTTATTTCTTATTTGC  480

seq1  CTCCGTTTGGGTCCCCAAGGATGGGGTCTGCAATACTCTCTAAGAAAATT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGTTTGGGTCCCCAAGGATGGGGTCTGCAATACTCTCTAAGAAAATT  530

seq1  TCCCTTTCTTATCTCCTAAAATGATTAGGGAAGTCATGAACTAGGGGCCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTCTTATCTCCTAAAATGATTAGGGAAGTCATGAACTAGGGGCCT  580

seq1  TCAAGTGGATCTAAAGATATATGAACACATATGAATGAGTGTTGGTATAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTGGATCTAAAGATATATGAACACATATGAATGAGTGTTGGTATAG  630

seq1  GGGTGTGGGAACATATCGTAATGTGTGAAGGAGTGTGAAAGTCAGTGAGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGGGAACATATCGTAATGTGTGAAGGAGTGTGAAAGTCAGTGAGG  680

seq1  GAGAGTGTGAACAAGTGTGGGGTGTGGTAGGGTGTGTGAGTGTGTGGGAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGTGAACAAGTGTGGGGTGTGGTAGGGTGTGTGAGTGTGTGGGAG  730

seq1  ACTGATGTGACCGTGTGAGGGTGTCAGTAAGTGTTTTAGTGGCTATGCTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGTGACCGTGTGAGGGTGTCAGTAAGTGTTTTAGTGGCTATGCTT  780

seq1  TGAAGTATGTAAGGGTGTGTAGGTATGTGAAGGAGTCTGTGTGAAAGAGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTATGTAAGGGTGTGTAGGTATGTGAAGGAGTCTGTGTGAAAGAGT  830

seq1  GTATGTATATGAATGAGTGTGAGCTTATGGTGGCGCACGCCTTTAATTCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTATATGAATGAGTGTGAGCTTATGGTGGCGCACGCCTTTAATTCC  880

seq1  AGCAACCTGGAGGCAGAGGCAGGTGGATCTCTGTGAGTTTGAGGCCATCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCTGGAGGCAGAGGCAGGTGGATCTCTGTGAGTTTGAGGCCATCC  930

seq1  TGGTCTACATAGTGAGTTCCAGGACAGCCAGGGCTACACAGATAAACCCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTACATAGTGAGTTCCAGGACAGCCAGGGCTACACAGATAAACCCT  980

seq1  GTGTCTAAAAGCCAAACAGAACAAAACTAAAAGAACAAACAAAATGTGTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTAAAAGCCAAACAGAACAAAACTAAAAGAACAAACAAAATGTGTG  1030

seq1  TGAGATCGTGTAGCTCTGTGTCTCTGTGTGTGTGTGTCTGTGTGTATGTA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCGTGTAGCTCTGTGTCTCTGTGTGTGTGTGTCTGTGTGTATGTA  1080

seq1  TATGTGTGTATGTGCATGTGTGTGCTTGCCGCACACACCTTTGTGTAGAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTGTATGTGCATGTGTGTGCTTGCCGCACACACCTTTGTGTAGAA  1130

seq1  GGCAAGGATGGAGACATGGTCAGGGTTTAGGGTTATTCCCTTCTGTGAAT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGGATGGAGACATGGTCAGGGTTTAGGGTTATTCCCTTCTGTGAAT  1180

seq1  TC  1199
      ||
seq2  TC  1182