BAC Information

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BAC

Clone NameB6Ng01-108M10
Chromosome18 (Build37)
Map Location 39,055,595 - 39,214,942
singlet/doubletdoublet
Overlap geneFgf1, EG545253, Arhgap26
Upstream geneDiap1, Hdac3, 4631403P03Rik, Fchsd1, Centd3, Pcdh1, LOC100042583, 1700086O06Rik, 0610009O20Rik, Pcdh12, Rnf14, Gnpda1, LOC240219, LOC100041839, Ndfip1, Spry4, 9630014M24Rik, LOC100041865, LOC100041875, LOC100042671, LOC666809, LOC100041894
Downstream geneNr3c1, Pabpc2, LOC100041939
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108M10.bB6Ng01-108M10.g
ACCDH915870DH915871
length615156
definitionDH915870|Mus musculus domesticus DNA, BAC clone: B6Ng01-108M10, 5' end.DH915871|Mus musculus domesticus DNA, BAC clone: B6Ng01-108M10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,055,595 - 39,056,209)(39,214,787 - 39,214,942)
sequence
gaattctacatatatgaaatgtccagaatagacaaatccatggaaacaga
aagtaggttagttatttccaaggagcaaaggaatgaaaaaaataggaaat
agctgctaatagttatatccccaactaggtagtggccacacttgtatgat
tctataaatgtcctaaaagccactgagttgtgtactttataatggtgaat
tgtaatgtgtgaattatatctcgagaaagctgcttttgaaatactttctg
ctatttcagtacttgggggctgagaatgtagctgggctggcacagtgcat
tttttccaaaagttctttctaatacacttacaatagtccaatattcagag
ggtaatgatataatcacttaaaaaatggcattttctgctagaaggcaagc
ttcaagaagtgggagatttttgttttgtttatttcttttttgttatattt
accatgtttaacacaagacttagttcactgtaggatctgtaaatgttcat
caaatgaaaggagcctttgaggcgctcccgtcttaaatggacacacagtc
tcactggtgactgggaattctttgcatttcttcgttttcagagttggtgc
tgggggggggggttc
tatgctcatggattcatgttcctttctacatcacaaacactctgtaaggt
ggcttgccctctccgattccagtgccaaagtcaaaaaagaatgttcacgg
acaaaaggagtcaataagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_39055595_39056209
seq2: B6Ng01-108M10.b_47_661

seq1  GAATTCTACATATATGAAATGTCCAGAATAGACAAATCCATGGAAACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATATATGAAATGTCCAGAATAGACAAATCCATGGAAACAGA  50

seq1  AAGTAGGTTAGTTATTTCCAAGGAGCAAAGGAATGAAAAAAATAGGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGGTTAGTTATTTCCAAGGAGCAAAGGAATGAAAAAAATAGGAAAT  100

seq1  AGCTGCTAATAGTTATATCCCCAACTAGGTAGTGGCCACACTTGTATGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTAATAGTTATATCCCCAACTAGGTAGTGGCCACACTTGTATGAT  150

seq1  TCTATAAATGTCCTAAAAGCCACTGAGTTGTGTACTTTATAATGGTGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAAATGTCCTAAAAGCCACTGAGTTGTGTACTTTATAATGGTGAAT  200

seq1  TGTAATGTGTGAATTATATCTCGAGAAAGCTGCTTTTGAAATACTTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGTGTGAATTATATCTCGAGAAAGCTGCTTTTGAAATACTTTCTG  250

seq1  CTATTTCAGTACTTGGGGGCTGAGAATGTAGCTGGGCTGGCACAGTGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCAGTACTTGGGGGCTGAGAATGTAGCTGGGCTGGCACAGTGCAT  300

seq1  TTTTTCCAAAAGTTCTTTCTAATACACTTACAATAGTCCAATATTCAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCAAAAGTTCTTTCTAATACACTTACAATAGTCCAATATTCAGAG  350

seq1  GGTAATGATATAATCACTTAAAAAATGGCATTTTCTGCTAGAAGGCAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATGATATAATCACTTAAAAAATGGCATTTTCTGCTAGAAGGCAAGC  400

seq1  TTCAAGAAGTGGGAGATTTTTGTTTTGTTTATTTCTTTTTTGTTATATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGAAGTGGGAGATTTTTGTTTTGTTTATTTCTTTTTTGTTATATTT  450

seq1  ACCATGTTTAACACAAGACTTAGTTCACTGTAGGATCTGTAAATGTTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTTTAACACAAGACTTAGTTCACTGTAGGATCTGTAAATGTTCAT  500

seq1  CAAATGAAAGGAGCCTTTGAGGCGCTCCCGTCTTAAATGGACACACAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAAAGGAGCCTTTGAGGCGCTCCCGTCTTAAATGGACACACAGTC  550

seq1  TCACTGGTGACTGGGAATTCTTTGCATTTCTTCGTTTTCAGAGTTGGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGTGACTGGGAATTCTTTGCATTTCTTCGTTTTCAGAGTTGGTGC  600

seq1  TGGGGGGGGGGGTTC  615
      |||||||||||||||
seq2  TGGGGGGGGGGGTTC  615

seq1: chr18_39214787_39214942
seq2: B6Ng01-108M10.g_74_229 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACACTTATTGACTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACTTATTGACTCC  50

seq1  TTTTGTCCGTGAACATTCTTTTTTGACTTTGGCACTGGAATCGGAGAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCCGTGAACATTCTTTTTTGACTTTGGCACTGGAATCGGAGAGGG  100

seq1  CAAGCCACCTTACAGAGTGTTTGTGATGTAGAAAGGAACATGAATCCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCACCTTACAGAGTGTTTGTGATGTAGAAAGGAACATGAATCCATG  150

seq1  AGCATA  156
      ||||||
seq2  AGCATA  156