BAC Information

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BAC

Clone NameB6Ng01-109B24
Chromosome18 (Build37)
Map Location 51,729,411 - 51,869,806
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042373, LOC100042385, Prr16
Downstream geneEG240289, Ftmt, Srfbp1, Lox, Zfp474, 1700034E13Rik, Gykl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109B24.bB6Ng01-109B24.g
ACCDH916119DH916120
length1,1851,008
definitionDH916119|Mus musculus domesticus DNA, BAC clone: B6Ng01-109B24, 5' end.DH916120|Mus musculus domesticus DNA, BAC clone: B6Ng01-109B24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,729,411 - 51,730,605)(51,868,789 - 51,869,806)
sequence
gaattctgggaatatgtacatgttccttcatcaagactatcagtctggca
gttcagatagatttttgatggaatgtttagggtaattaaaaccagcagct
tgtcttgttccatatccccgagacaatgattttaacattttcccattttg
gtgtagtattaacactaggtttaccatggataataattcattctgtgtct
gttgagtgatcgttttttatacttgagtgtattaagtgaaatatcacatt
gatttacaaatgttggagtatccctaaatttctgaaatgagtcatgagat
catggtgaatgatcttaatgagctgttgttgtgctagcagattattgtca
attttgtctctgttaagtatttttgttcatttgatatactgtctaatagt
tttactttgtgcaatgtctttgtccattttagtatcaaagtaatagtgat
cacattaattgttgagatattcctatataacagctaacatactttgtttc
ctgtttaagagaccataaaaacaagattacataatgaatttcacttcttt
ctttctgataaattggactgtaattcatctgagaggacatgtcccctcag
gaagtgtcatcctcctgacaatgacattttaagcatcgtgaaagggataa
tacccaataatcatcgtcctttgtgcaactcagtagaacatctaagtatt
tgagattttctttttcagtctcaacatttacatcaagatgcattagccta
ctgtgaatcaatcatgatgtgctgcttaaatagctgctattacactttct
gtcttctatgaaaattatttagtaactatatataacatacttaaaggaca
gcttattatcacttaataaaacttaacaaagaaattaaagtgaaccaaag
atcttacatttaaaatattttctgcatcacattatttatcaaacattaaa
gtttagctatatcaggcacagtgaaactaaatgggttagaattttgaaga
atttaggaaaaccaaattatagtaaaaagtgcatatatgcgacaaactat
gcttatcgtccagctcttcctaatcttgtgtaaggtgaaagggacaccat
ccactcatttcctggatcctgtgtgactatggaacaaagtgaacagaaaa
agatcttgcagaagccttccactgactgtaagttt
gaattcctcaggaaaggattgataaactcgccatcaagaatgaagggaag
caggggggcgggaagcaaatttgtttcgtttttccatgttttatctggct
ggcaacagaaggcatcatgcacgttttatgtgggctgttaggcttgaaat
aatcaagaaaagccctcataggaatgctcagcagactgaatttcagcaga
ctctatatgcggttcagttgacaaccacctccaagtattagctttctggg
taatggagatataaataacattgttttcctatttgaaatttccctgttca
ttattgataaactaaaaaccaacttacatatttgaaagttgcaccatgca
agcctgttataactagatttctctaaatgattcttttgaatgttctacat
agatgattatgccaactgtgaagaaagatgaccacattttatttcctatt
gtatgtatgtatctttcattctcatgttatcatattatcaagctatccct
ttggatgacaaaaatattttgaaagatattgatagatttgtattatttta
aaataggaagggagaattttaaaatcatatagcattttttgtattaaaag
tgccatgtatgcaaaataaaaattaaaaaatccataaaaccagaataaca
gacttcattggtactcactattcatcttttctacctttattctccttttc
tataggtctccacactttttacctatagaaagacatgcatacaaaggtgt
tgggaggcatctttcactacctcctactttgtaggggcaactagttgcaa
gtgaaatgccccaatactgtgcatatagcagatatttcttctgagttttg
ctttcaggcccatgaaggaggaaagttggcttcactgaagtgagtccttg
tctactctcccacctggattgtgtgtcaaaactggacacacaaatgtcct
tacatttgtcctttagaggcatgttttttttctggtgagaaacagcagtg
tagcagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_51729411_51730605
seq2: B6Ng01-109B24.b_46_1230

seq1  GAATTCTGGGAATATGTACATGTTCCTTCATCAAGACTATCAGTCTGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAATATGTACATGTTCCTTCATCAAGACTATCAGTCTGGCA  50

seq1  GTTCAGATAGATTTTTGATGGAATGTTTAGGGTAATTAAAACCAGCAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGATAGATTTTTGATGGAATGTTTAGGGTAATTAAAACCAGCAGCT  100

seq1  TGTCTTGTTCCATATCCCCGAGACAATGATTTTAACATTTTCCCATTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGTTCCATATCCCCGAGACAATGATTTTAACATTTTCCCATTTTG  150

seq1  GTGTAGTATTAACACTAGGTTTACCATGGATAATAATTCATTCTGTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGTATTAACACTAGGTTTACCATGGATAATAATTCATTCTGTGTCT  200

seq1  GTTGAGTGATCGTTTTTTATACTTGAGTGTATTAAGTGAAATATCACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGTGATCGTTTTTTATACTTGAGTGTATTAAGTGAAATATCACATT  250

seq1  GATTTACAAATGTTGGAGTATCCCTAAATTTCTGAAATGAGTCATGAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTACAAATGTTGGAGTATCCCTAAATTTCTGAAATGAGTCATGAGAT  300

seq1  CATGGTGAATGATCTTAATGAGCTGTTGTTGTGCTAGCAGATTATTGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGAATGATCTTAATGAGCTGTTGTTGTGCTAGCAGATTATTGTCA  350

seq1  ATTTTGTCTCTGTTAAGTATTTTTGTTCATTTGATATACTGTCTAATAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTCTCTGTTAAGTATTTTTGTTCATTTGATATACTGTCTAATAGT  400

seq1  TTTACTTTGTGCAATGTCTTTGTCCATTTTAGTATCAAAGTAATAGTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTGTGCAATGTCTTTGTCCATTTTAGTATCAAAGTAATAGTGAT  450

seq1  CACATTAATTGTTGAGATATTCCTATATAACAGCTAACATACTTTGTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTAATTGTTGAGATATTCCTATATAACAGCTAACATACTTTGTTTC  500

seq1  CTGTTTAAGAGACCATAAAAACAAGATTACATAATGAATTTCACTTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTAAGAGACCATAAAAACAAGATTACATAATGAATTTCACTTCTTT  550

seq1  CTTTCTGATAAATTGGACTGTAATTCATCTGAGAGGACATGTCCCCTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGATAAATTGGACTGTAATTCATCTGAGAGGACATGTCCCCTCAG  600

seq1  GAAGTGTCATCCTCCTGACAATGACATTTTAAGCATCGTGAAAGGGATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTCATCCTCCTGACAATGACATTTTAAGCATCGTGAAAGGGATAA  650

seq1  TACCCAATAATCATCGTCCTTTGTGCAACTCAGTAGAACATCTAAGTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAATAATCATCGTCCTTTGTGCAACTCAGTAGAACATCTAAGTATT  700

seq1  TGAGATTTTCTTTTTCAGTCTCAACATTTACATCAAGATGCATTAGCCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTTTCTTTTTCAGTCTCAACATTTACATCAAGATGCATTAGCCTA  750

seq1  CTGTGAATCAATCATGATGTGCTGCTTAAATAGCTGCTATTACACTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAATCAATCATGATGTGCTGCTTAAATAGCTGCTATTACACTTTCT  800

seq1  GTCTTCTATGAAAATTATTTAGTAACTATATATAACATACTTAAAGGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTATGAAAATTATTTAGTAACTATATATAACATACTTAAAGGACA  850

seq1  GCTTATTATCACTTAATAAAACTTAACAAAGAAATTAAAGTGAACCAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATTATCACTTAATAAAACTTAACAAAGAAATTAAAGTGAACCAAAG  900

seq1  ATCTTACATTTAAAATATTTTCTGCATCACATTATTTATCAAAACATTAA  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATCTTACATTTAAAATATTTTCTGCATCACATTATTTATC-AAACATTAA  949

seq1  AGTTTAGCTATATCAGGCACAGGTGAAACTAAATGGGTTAGAATTTTGAA  1000
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGTTTAGCTATATCAGGCACA-GTGAAACTAAATGGGTTAGAATTTTGAA  998

seq1  GAATTTAGGAAGACCAAATTATAGTAAAAAGTGCATATATGCGACAAACT  1050
      ||||||||||| ||||||||||||||||||||||||||||||||||||| 
seq2  GAATTTAGGAAAACCAAATTATAGTAAAAAGTGCATATATGCGACAAAC-  1047

seq1  TATGC-TATCGT-CAGCTCTTCCTATTTTCTATGTGTTATGTTGATAGGA  1098
      ||||| |||||| |||||||||||| | |   ||||| | ||  |  |||
seq2  TATGCTTATCGTCCAGCTCTTCCTAATCT---TGTGTAAGGTGAAAGGGA  1094

seq1  CACCATC--ATCATTTTCCTAGATACATGTG-GACTATGAGACAGAGGTG  1145
      |||||||   ||| |||||| ||| | |||| |||||||  ||| | |||
seq2  CACCATCCACTCA-TTTCCTGGAT-CCTGTGTGACTATGGAACA-AAGTG  1141

seq1  ACACAGAAAAAGATTTCTGCAAAGAAGCTTTCATACTTGACTGTAAGTTT  1195
      | |||||||||||| | |||  |||||| |||  || |||||||||||||
seq2  A-ACAGAAAAAGATCT-TGC--AGAAGCCTTC-CAC-TGACTGTAAGTTT  1185

seq1: chr18_51868789_51869806
seq2: B6Ng01-109B24.g_66_1073 (reverse)

seq1  ATCTGCTACACTGCTGTTTCTCAACAGAAAAAAAAAAAAAACATGCCTTC  50
      ||||||||||||||||||||||| |||      |||||||||||||| ||
seq2  ATCTGCTACACTGCTGTTTCTCACCAG------AAAAAAAACATGCC-TC  43

seq1  TAAAGGGACAAATTGTAAGGGACAATTTTGTGTGTCAGTTTTTGACACAC  100
      |||| ||||||| ||||| |||||  ||||||||||   |||||||||||
seq2  TAAA-GGACAAA-TGTAA-GGACA--TTTGTGTGTCCAGTTTTGACACAC  88

seq1  AATTCAGGTGGGAAGAGTAGACAAGGACTCACTTCAGTGAAGCC-ACCTT  149
      ||| |||||||| ||||||||||||||||||||||||||||||| || ||
seq2  AATCCAGGTGGG-AGAGTAGACAAGGACTCACTTCAGTGAAGCCAACTTT  137

seq1  CCT-CTTCATGGGCCTG-AAGCAAAACTCAGAAGAAATATCTGCTATATG  197
      ||| ||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCTCCTTCATGGGCCTGAAAGCAAAACTCAGAAGAAATATCTGCTATATG  187

seq1  CACAGTATTGGGGCATTTCACTTGCAACTAGTTGCCCCTACAAAGTAGGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTATTGGGGCATTTCACTTGCAACTAGTTGCCCCTACAAAGTAGGA  237

seq1  GGTAGTGAAAGATGCCTCCCAACACCTTTGTATGCATGTCTTTCTATAGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTGAAAGATGCCTCCCAACACCTTTGTATGCATGTCTTTCTATAGG  287

seq1  TAAAAAGTGTGGAGACCTATAGAAAAGGAGAATAAAGGTAGAAAAGATGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGTGTGGAGACCTATAGAAAAGGAGAATAAAGGTAGAAAAGATGA  337

seq1  ATAGTGAGTACCAATGAAGTCTGTTATTCTGGTTTTATGGATTTTTTAAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGAGTACCAATGAAGTCTGTTATTCTGGTTTTATGGATTTTTTAAT  387

seq1  TTTTATTTTGCATACATGGCACTTTTAATACAAAAAATGCTATATGATTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTGCATACATGGCACTTTTAATACAAAAAATGCTATATGATTT  437

seq1  TAAAATTCTCCCTTCCTATTTTAAAATAATACAAATCTATCAATATCTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTCTCCCTTCCTATTTTAAAATAATACAAATCTATCAATATCTTT  487

seq1  CAAAATATTTTTGTCATCCAAAGGGATAGCTTGATAATATGATAACATGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATTTTTGTCATCCAAAGGGATAGCTTGATAATATGATAACATGA  537

seq1  GAATGAAAGATACATACATACAATAGGAAATAAAATGTGGTCATCTTTCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAAAGATACATACATACAATAGGAAATAAAATGTGGTCATCTTTCT  587

seq1  TCACAGTTGGCATAATCATCTATGTAGAACATTCAAAAGAATCATTTAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTTGGCATAATCATCTATGTAGAACATTCAAAAGAATCATTTAGA  637

seq1  GAAATCTAGTTATAACAGGCTTGCATGGTGCAACTTTCAAATATGTAAGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTAGTTATAACAGGCTTGCATGGTGCAACTTTCAAATATGTAAGT  687

seq1  TGGTTTTTAGTTTATCAATAATGAACAGGGAAATTTCAAATAGGAAAACA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTTAGTTTATCAATAATGAACAGGGAAATTTCAAATAGGAAAACA  737

seq1  ATGTTATTTATATCTCCATTACCCAGAAAGCTAATACTTGGAGGTGGTTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATTTATATCTCCATTACCCAGAAAGCTAATACTTGGAGGTGGTTG  787

seq1  TCAACTGAACCGCATATAGAGTCTGCTGAAATTCAGTCTGCTGAGCATTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTGAACCGCATATAGAGTCTGCTGAAATTCAGTCTGCTGAGCATTC  837

seq1  CTATGAGGGCTTTTCTTGATTATTTCAAGCCTAACAGCCCACATAAAACG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAGGGCTTTTCTTGATTATTTCAAGCCTAACAGCCCACATAAAACG  887

seq1  TGCATGATGCCTTCTGTTGCCAGCCAGATAAAACATGGAAAAACGAAACA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGATGCCTTCTGTTGCCAGCCAGATAAAACATGGAAAAACGAAACA  937

seq1  AATTTGCTTCCCGCCCCCCTGCTTCCCTTCATTCTTGATGGCGAGTTTAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCTTCCCGCCCCCCTGCTTCCCTTCATTCTTGATGGCGAGTTTAT  987

seq1  CAATCCTTTCCTGAGGAATTC  1018
      |||||||||||||||||||||
seq2  CAATCCTTTCCTGAGGAATTC  1008