BAC Information

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BAC

Clone NameB6Ng01-111B10
Chromosome18 (Build37)
Map Location 77,096,801 - 77,237,277
singlet/doubletdoublet
Overlap geneEG664805, LOC620139, Ier3ip1, Hdhd2, Katnal2
Upstream geneZbtb7c, 4833419G08Rik, LOC668184, Smad2, LOC668188, EG639576
Downstream genePias2, EG639653, St8sia5, Loxhd1, Rnf165, 8030462N17Rik, 4930465K10Rik, Ccdc5, Atp5a1, Pstpip2, 5430411K18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111B10.bB6Ng01-111B10.g
ACCDH917529DH917530
length1,1531,075
definitionDH917529|Mus musculus domesticus DNA, BAC clone: B6Ng01-111B10, 5' end.DH917530|Mus musculus domesticus DNA, BAC clone: B6Ng01-111B10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,096,801 - 77,097,965)(77,236,178 - 77,237,277)
sequence
gaattcattctcctctctctctctctctctctctctctctaggttttaat
ggccaaattcaagttcttcatgacttgtgtaatcattaatgacaacagtc
attgctttcctattgagcacatatcctgttctaacaatcattttattcca
taaatccgggatgccttgagcttctcaggaatttgctgaaacagataaat
agacaagcagataagtagacagaatttgcttggggcgagtaggacacaac
aagacaaattgttaactccaagtcgctgaactttctctcaagggcgatct
tgaagggaattttaaaagatgacctttgcacatctgaaacttgctcagtt
gctcagtaataatcaggtatcgagcaaggcaagcaagctattgtcatttc
caattagttctcatcccacccctctgtcttaaaacaggaaaggttcaagt
caactttctcctttcctttccagtctccaaggcaaacccggagctctaag
cccgctgttcttccgtggaggagatggcttccagcccactgccagggccc
aatgatatcctacttgcatcgccatcgagcgccttccagcccgacgcatt
gagccaaccgcggccgggtcacgccaaccttaaacccaaccaggtgggcc
aggtgatcctctatggcattcccatcgtgtccttggtgatcgacgggcag
gagcgcctgtgcctggcgcagatctccaacactcttctcaagaacttcag
ctataacgagatccacaaccgccgagtggctctgggcatcacgtgcgtgc
agtgcacacctgtccaactggagatcctgcggcgggccgggccatgccca
tctcttcgcggcgttgtggcatgatcaccaagcgtgaggccgagcgcctt
tgtagtcattcctgggcgaaaatcggccacccaagctgccggaaaacttc
gccttcgacgtgtcgcacgaattgtgcctggggctgccgcgtcagcttca
tcccggcgcgctacaacagctctcgcggcaagtgcatcaagtgtagctac
tgcacatgtacttctccccaacaggtcattttcactccaacgcaccccga
acgcaagtacacaagcagaccggctaacttcatctgggggcggccatctc
aag
gaattctttattttgtctttttaatgtctgttcttttgctggctgcgtcc
tgttcagtctgtaatcttttactctggaacagagcatcttattcaaccaa
gacttgcttttgagggttggatcctctggagtttgggaggcagggcgggc
acatcaccttgagttcaccagccaacctgagctatatcgtgagttccagt
ccagcttctgctgtctcaaagtaacaataaaaacccaccagcaataataa
aaacaacaaacagacaaaagaaaaaagtgtacaaagaacctgatcctagc
aggcagagttgaggtgggtgacggccctgaggaatcaatcacatggcgaa
cagaaaaggacattttcagcttgttacccaggcctgttcttttcctcact
ttttcttcctgttgtccccagaggtgaaaggggagaagttactacatgat
catatatgttctaaggatgcttgtgtccacatggaacatgtcattggcag
tgtttccctggtggtaactaggcaaccagaagcttagcaactggatttta
tcttcagctcccacaattatcatccgtaaccttgaactagccacctcctc
tgtctggctctagttttatcaaatgataaatgaaatattggaccatatcc
aaccccctcgggtgggacgaggaagaagtaacggtgatggttataagggt
gcctccgagtaccattgtaggatggatgcttattagtagaattctaaact
cttaatctgggagcatttgaggacgaatgtttaggtgtatgatgagggct
aacttaagaatataatttgaacctgcccctgctttcccccgttcagtgct
gttgaacttgcgcgatatcatgccccctccacgatcttcctggatgagct
ggagtcgtgatgagtcagagagcatgtttcctgggtacagacaggtgtgt
tgtgttgtgtgtgttgtgtcatcatttcttccctctttgtagtgtgtgtg
atggtgaagctttcaacattacagcagatgaggcctattataggccagat
ttctgcaggaaagaaggtctttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_77096801_77097965
seq2: B6Ng01-111B10.b_47_1199

seq1  GAATTCATTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGGTTTTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGGTTTTAAT  50

seq1  GGCCAAATTCAAGTTCTTCATGACTTGTGTAATCATTAATGACAACAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAATTCAAGTTCTTCATGACTTGTGTAATCATTAATGACAACAGTC  100

seq1  ATTGCTTTCCTATTGAGCACATATCCTGTTCTAACAATCATTTTATTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTTCCTATTGAGCACATATCCTGTTCTAACAATCATTTTATTCCA  150

seq1  TAAATCCGGGATGCCTTGAGCTTCTCAGGAATTTGCTGAAACAGATAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCGGGATGCCTTGAGCTTCTCAGGAATTTGCTGAAACAGATAAAT  200

seq1  AGACAAGCAGATAAGTAGACAGAATTTGCTTGGGGCGAGTAGGACACAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGCAGATAAGTAGACAGAATTTGCTTGGGGCGAGTAGGACACAAC  250

seq1  AAGACAAATTGTTAACTCCAAGTCGCTGAACTTTCTCTCAAGGGCGATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAATTGTTAACTCCAAGTCGCTGAACTTTCTCTCAAGGGCGATCT  300

seq1  TGAAGGGAATTTTAAAAGATGACCTTTGCACATCTGAAACTTGCTCAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGAATTTTAAAAGATGACCTTTGCACATCTGAAACTTGCTCAGTT  350

seq1  GCTCAGTAATAATCAGGTATCGAGCAAGGCAAGCAAGCTATTGTCATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTAATAATCAGGTATCGAGCAAGGCAAGCAAGCTATTGTCATTTC  400

seq1  CAATTAGTTCTCATCCCACCCCTCTGTCTTAAAACAGGAAAGGTTCAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAGTTCTCATCCCACCCCTCTGTCTTAAAACAGGAAAGGTTCAAGT  450

seq1  CAACTTTCTCCTTTCCTTTCCAGTCTCCAAGGCAAACCCGGAGCTCTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTCTCCTTTCCTTTCCAGTCTCCAAGGCAAACCCGGAGCTCTAAG  500

seq1  CCCGCTGTTCTTCCGTGGAGGAGATGGCTTCCAGCCCACTGCCAGGGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCTGTTCTTCCGTGGAGGAGATGGCTTCCAGCCCACTGCCAGGGCCC  550

seq1  AATGATATCCTACTTGCATCGCCATCGAGCGCCTTCCAGCCCGACGCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATATCCTACTTGCATCGCCATCGAGCGCCTTCCAGCCCGACGCATT  600

seq1  GAGCCAACCGCGGCCGGGTCACGCCAACCTTAAACCCAACCAGGTGGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAACCGCGGCCGGGTCACGCCAACCTTAAACCCAACCAGGTGGGCC  650

seq1  AGGTGATCCTCTATGGCATTCCCATCGTGTCCTTGGTGATCGACGGGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGATCCTCTATGGCATTCCCATCGTGTCCTTGGTGATCGACGGGCAG  700

seq1  GAGCGCCTGTGCCTGGCGCAGATCTCCAACACTCTTCTCAAGAACTTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGCCTGTGCCTGGCGCAGATCTCCAACACTCTTCTCAAGAACTTCAG  750

seq1  CTATAACGAGATCCACAACCGCCGAGTGGCTCTGGGCATCACGTGCGTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAACGAGATCCACAACCGCCGAGTGGCTCTGGGCATCACGTGCGTGC  800

seq1  AGTGCACACCTGTCCAACTGGAGATCCTGCGGCGGGCCGGGGCCATGCCC  850
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGTGCACACCTGTCCAACTGGAGATCCTGCGGCGGGCC-GGGCCATGCCC  849

seq1  ATCTCTTCGCGGCGTTGTGGCATGATCACCAAGCGTGAGGCCGAGCGCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTCGCGGCGTTGTGGCATGATCACCAAGCGTGAGGCCGAGCGCCT  899

seq1  TTGTAAGTCATTCCTGGGCGAAAATCGGCCACCCAAGCTGCCGGACAACT  950
      |||| |||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTGT-AGTCATTCCTGGGCGAAAATCGGCCACCCAAGCTGCCGGAAAACT  948

seq1  TCGCCTTCGACGTGTCGCACG-AGTGTGCCTGGGGCTGCCGCGGCAGCTT  999
      ||||||||||||||||||||| | ||||||||||||||||||| ||||||
seq2  TCGCCTTCGACGTGTCGCACGAATTGTGCCTGGGGCTGCCGCGTCAGCTT  998

seq1  CATCCCGGCGCGCTACAACAGCTCTCGCGCCAAGTGCATCAAGTGTAGCT  1049
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CATCCCGGCGCGCTACAACAGCTCTCGCGGCAAGTGCATCAAGTGTAGCT  1048

seq1  ACTGCAACATGTACTTCTCCCCCAACAAGTTCATTTTCCACTCCCACCGC  1099
      ||||| |||||||||||| ||||||| || ||||||| |||| ||| |||
seq2  ACTGC-ACATGTACTTCT-CCCCAAC-AGGTCATTTT-CACT-CCAACGC  1093

seq1  ACCCCAGACGCCAAGTACACACAGCCAGACGCGGCTAACTTCAATTCCTG  1149
      |||||  ||| |||||||||| || ||||| ||||||||||||  ||  |
seq2  ACCCCGAACG-CAAGTACACA-AG-CAGAC-CGGCTAACTTCA--TCTGG  1137

seq1  GCGCCGCCATCTCAAG  1165
      | || |||||||||||
seq2  GGGCGGCCATCTCAAG  1153

seq1: chr18_77236178_77237277
seq2: B6Ng01-111B10.g_66_1140 (reverse)

seq1  AAGAAAGACCTTTCTGTGTCCCTGCAGAAAATCTGTGGGCTTATTAATAG  50
      |||||||||| ||||   | ||||||| ||||||   ||| || ||||||
seq2  AAGAAAGACC-TTCT---TTCCTGCAG-AAATCT---GGCCTA-TAATAG  41

seq1  G-CTCATTCTGCTGGTAAATGTTGAAAGGCTTCCAACCATCACACACACT  99
      | |||| |||||||   |||||||||| |||||  |||||||||||||| 
seq2  GCCTCA-TCTGCTG--TAATGTTGAAA-GCTTC--ACCATCACACACAC-  84

seq1  TACAAAGAGGGGAGAAATGATGACACAACACAACACAACACAACACAACC  149
      ||||||||||| ||||||||||||||||||| |||||||||||||||  |
seq2  TACAAAGAGGGAAGAAATGATGACACAACAC-ACACAACACAACACA--C  131

seq1  CTGTCTGTTACCCAGGAACCATGCCTCTCTGACTCATCACCGACTCCAGC  199
      ||||||| |||||||||| |||| ||||||||||||||| ||||||||||
seq2  CTGTCTG-TACCCAGGAAACATG-CTCTCTGACTCATCA-CGACTCCAGC  178

seq1  TCATCCAGGAAGATCGTGGAGGGGGCATGATATCGCGCAAGTTCAAACAG  249
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCATCCAGGAAGATCGTGGAGGGGGCATGATATCGCGCAAGTTC-AACAG  227

seq1  CACCTGAACGGGGGGAAAGCAGGGGCAGGTTCAAATTTATATTCTTAAGT  299
      || |||||| ||||||||||||||||||||||||| ||||||||||||||
seq2  CA-CTGAAC-GGGGGAAAGCAGGGGCAGGTTCAAA-TTATATTCTTAAGT  274

seq1  TAGCCCTCATCATACACCTAAACATTCGTCCTCAAATGCTCCCAGATTAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTCATCATACACCTAAACATTCGTCCTCAAATGCTCCCAGATTAA  324

seq1  GAGTTTAGAATTCTACTAATAAGCATCCATCCTACAATGGTACTCGGAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTAGAATTCTACTAATAAGCATCCATCCTACAATGGTACTCGGAGG  374

seq1  CACCCTTATAACCATCACCGTTACTTCTTCCTCGTCCCACCCGAGGGGGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTATAACCATCACCGTTACTTCTTCCTCGTCCCACCCGAGGGGGT  424

seq1  TGGATATGGTCCAATATTTCATTTATCATTTGATAAAACTAGAGCCAGAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATGGTCCAATATTTCATTTATCATTTGATAAAACTAGAGCCAGAC  474

seq1  AGAGGAGGTGGCTAGTTCAAGGTTACGGATGATAATTGTGGGAGCTGAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGGTGGCTAGTTCAAGGTTACGGATGATAATTGTGGGAGCTGAAG  524

seq1  ATAAAATCCAGTTGCTAAGCTTCTGGTTGCCTAGTTACCACCAGGGAAAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATCCAGTTGCTAAGCTTCTGGTTGCCTAGTTACCACCAGGGAAAC  574

seq1  ACTGCCAATGACATGTTCCATGTGGACACAAGCATCCTTAGAACATATAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCAATGACATGTTCCATGTGGACACAAGCATCCTTAGAACATATAT  624

seq1  GATCATGTAGTAACTTCTCCCCTTTCACCTCTGGGGACAACAGGAAGAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATGTAGTAACTTCTCCCCTTTCACCTCTGGGGACAACAGGAAGAAA  674

seq1  AAGTGAGGAAAAGAACAGGCCTGGGTAACAAGCTGAAAATGTCCTTTTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGGAAAAGAACAGGCCTGGGTAACAAGCTGAAAATGTCCTTTTCT  724

seq1  GTTCGCCATGTGATTGATTCCTCAGGGCCGTCACCCACCTCAACTCTGCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGCCATGTGATTGATTCCTCAGGGCCGTCACCCACCTCAACTCTGCC  774

seq1  TGCTAGGATCAGGTTCTTTGTACACTTTTTTCTTTTGTCTGTTTGTTGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGGATCAGGTTCTTTGTACACTTTTTTCTTTTGTCTGTTTGTTGTT  824

seq1  TTTATTATTGCTGGTGGGTTTTTATTGTTACTTTGAGACAGCAGAAGCTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATTGCTGGTGGGTTTTTATTGTTACTTTGAGACAGCAGAAGCTG  874

seq1  GACTGGAACTCACGATATAGCTCAGGTTGGCTGGTGAACTCAAGGTGATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAACTCACGATATAGCTCAGGTTGGCTGGTGAACTCAAGGTGATG  924

seq1  TGCCCGCCCTGCCTCCCAAACTCCAGAGGATCCAACCCTCAAAAGCAAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCGCCCTGCCTCCCAAACTCCAGAGGATCCAACCCTCAAAAGCAAGT  974

seq1  CTTGGTTGAATAAGATGCTCTGTTCCAGAGTAAAAGATTACAGACTGAAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTGAATAAGATGCTCTGTTCCAGAGTAAAAGATTACAGACTGAAC  1024

seq1  AGGACGCAGCCAGCAAAAGAACAGACATTAAAAAGACAAAATAAAGAATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACGCAGCCAGCAAAAGAACAGACATTAAAAAGACAAAATAAAGAATT  1074

seq1  C  1100
      |
seq2  C  1075