BAC Information

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BAC

Clone NameB6Ng01-111D08
Chromosome18 (Build37)
Map Location 35,863,272 - 36,032,190
singlet/doubletdoublet
Overlap gene1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5
Upstream geneGfra3, Cdc25c, LOC100041859, 2810012G03Rik, LOC100041879, LOC100041887, Jmjd1b, Reep2, Egr1, Etf1, Hspa9, LOC100041377, EG626954, LOC100041951, Ctnna1, Lrrtm2, Sil1, LOC100041423, LOC666460, LOC666462, EG383341, EG436583, Matr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18
Downstream geneLOC100042131, Psd2, LOC100042150, LOC100041531, Pura, 0610010O12Rik, Pfdn1, Hbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111D08.bB6Ng01-111D08.g
ACCDH917617DH917618
length1,1601,102
definitionDH917617|Mus musculus domesticus DNA, BAC clone: B6Ng01-111D08, 5' end.DH917618|Mus musculus domesticus DNA, BAC clone: B6Ng01-111D08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,863,272 - 35,864,459)(36,031,075 - 36,032,190)
sequence
gaattcaatgtagttagacagtagtttgggttcctcccattgaagcccct
caggcatcagaggaaccataatggggagagtgagagggcaagtttgggag
ctaccatggagctccgccattccttgttcttaattcatccccattttact
catgagcctctgaggcatcgctctttctcagcccagccctttctctggcc
tgtcttcttttctaagaagtttggaaagaggaaaggagggcttattccta
cagtccctcaccctgttttccttggagtcaagcaaagaatcaaagcgact
ctttcacaggagaccactggcctcctcactctcttgctcatccactgagg
atcaccaagacccaagctaatcacatgctacagatcaggtctacaaaagg
gcaaaatgatcatgagttcagaaaattatctggggggaaaaatgcctgga
attcacttagattttattcaagaaaaccaaataagttatgctgtcaaata
ccaccaatttaggctgttgggaaactcaggtgaacactgaacccaaacag
aagggtaagagcatcagatgacaagtgtggctgtagcactgccctactgg
catagccctggcatgctgacttcatgactacttggaatgccaagagacca
aggactctcagtggaaaaagctcagagttagatacaggctatagttgggg
gttgccataaatcactgtgtggccctgagctacccctttctcctgctttg
acctcagtcttctataagttgagaatgttagagccagttggtaattacta
agccaaggtagccttaaggctcaatgtgtagctgcctctgggaccttcta
tgaggaaggctgtattgctattctctaatcaaacagttctgttttatatt
ttgagacttaaaaagcatgcatttgagactggagagctcagtcgttaggc
actgctgctcttcctgagtcttaagttcatcccagcagcacaatggtgct
ccaagcatctgtatgagatcatgccgcttttgtttgatgctttctgccac
ccagcatacatgcaataggcatacatgcattggcataacatgcattacat
aaaattgtaataacaatcttttaaagtatttaaaacattatttgaaaata
ccagaaataa
gaattccatggccctccccagtgttctgggaaccacgttgttctcttctc
tttcacagatgaagaaacacgggaactctaggaagagacagacccttggg
tccatgttcagggctgtgaccctctatctgtagactggatacaggagcat
cctgtttccccacctgctggacctgtgagatcaaactgggttctagtaga
cagccctttgcctctgctgtccccctcagaagccctctgctagctgccac
ccaaggccacctctcataacttttaataagaggtaatagcaccgagcagc
aggcatcagcttcatttttaattatctaatttacatgtaatcttccccac
caatgtgatgcagtttattaatgtttcacctaagagcaccctttcacggt
ctaaaaatgcattcgagaaactactgggcattggttccctgggaagaatg
atctagttcagagtggattccagctggggtctcgggccacagcatccaac
aaccaacagttcttaaccctagaataactgatgaacaaataccccagaat
tctttcataacacgtctcttgcccgccagctgcctccagaaatctagatt
gtgctgccctgtttatggggcttgaatctttgtacctactttttctttcc
tccccctcttcctccccttcctcctcccctcttcctttttctttcctccc
cctctccttcttccttccctctccctcctcttcttcctcttctatttttt
gttttttttttttggtttttcaagacaggtttctctatatagctctgggc
tgtcctgggaactcactctgtagaccagggctggcctctaactcaaaatc
cacctgcctcctgctctccaagtgcctggattaaaggggtgaagccaccc
cgcccagctctaattttttaagcacgggtttttactattgtgaccagact
ccagagatcccctgctctgcttcctgaggtgaggacttcagtatatcctt
cttccaattcatatgctagagatgatgctcttgactgaaggccaacccta
ttggacagtggacttccagggccttagagatgacggcaaggcctgacctg
cc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_35863272_35864459
seq2: B6Ng01-111D08.b_46_1205

seq1  GAATTCAATGTAGTTAGACAGTAGTTTGGGTTCCTCCCATTGAAGCCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGTAGTTAGACAGTAGTTTGGGTTCCTCCCATTGAAGCCCCT  50

seq1  CAGGCATCAGAGGAACCATAATGGGGAGAGTGAGAGGGCAAGTTTGGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATCAGAGGAACCATAATGGGGAGAGTGAGAGGGCAAGTTTGGGAG  100

seq1  CTACCATGGAGCTCCGCCATTCCTTGTTCTTAATTCATCCCCATTTTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCATGGAGCTCCGCCATTCCTTGTTCTTAATTCATCCCCATTTTACT  150

seq1  CATGAGCCTCTGAGGCATCGCTCTTTCTCAGCCCAGCCCTTTCTCTGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGCCTCTGAGGCATCGCTCTTTCTCAGCCCAGCCCTTTCTCTGGCC  200

seq1  TGTCTTCTTTTCTAAGAAGTTTGGAAAGAGGAAAGGAGGGCTTATTCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTTTTCTAAGAAGTTTGGAAAGAGGAAAGGAGGGCTTATTCCTA  250

seq1  CAGTCCCTCACCCTGTTTTCCTTGGAGTCAAGCAAAGAATCAAAGCGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCTCACCCTGTTTTCCTTGGAGTCAAGCAAAGAATCAAAGCGACT  300

seq1  CTTTCACAGGAGACCACTGGCCTCCTCACTCTCTTGCTCATCCACTGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACAGGAGACCACTGGCCTCCTCACTCTCTTGCTCATCCACTGAGG  350

seq1  ATCACCAAGACCCAAGCTAATCACATGCTACAGATCAGGTCTACAAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCAAGACCCAAGCTAATCACATGCTACAGATCAGGTCTACAAAAGG  400

seq1  GCAAAATGATCATGAGTTCAGAAAATTATCTGGGGGGAAAAATGCCTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATGATCATGAGTTCAGAAAATTATCTGGGGGGAAAAATGCCTGGA  450

seq1  ATTCACTTAGATTTTATTCAAGAAAACCAAATAAGTTATGCTGTCAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTTAGATTTTATTCAAGAAAACCAAATAAGTTATGCTGTCAAATA  500

seq1  CCACCAATTTAGGCTGTTGGGAAACTCAGGTGAACACTGAACCCAAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAATTTAGGCTGTTGGGAAACTCAGGTGAACACTGAACCCAAACAG  550

seq1  AAGGGTAAGAGCATCAGATGACAAGTGTGGCTGTAGCACTGCCCTACTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTAAGAGCATCAGATGACAAGTGTGGCTGTAGCACTGCCCTACTGG  600

seq1  CATAGCCCTGGCATGCTGACTTCATGACTACTTGGAATGCCAAGAGACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCCCTGGCATGCTGACTTCATGACTACTTGGAATGCCAAGAGACCA  650

seq1  AGGACTCTCAGTGGAAAAAGCTCAGAGTTAGATACAGGCTATAGTTGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCTCAGTGGAAAAAGCTCAGAGTTAGATACAGGCTATAGTTGGGG  700

seq1  GTTGCCATAAATCACTGTGTGGCCCTGAGCTACCCCTTTCTCCTGCTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCATAAATCACTGTGTGGCCCTGAGCTACCCCTTTCTCCTGCTTTG  750

seq1  ACCTCAGTCTTCTATAAGTTGAGAATGTTAGAGCCAGTTGGTAATTACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGTCTTCTATAAGTTGAGAATGTTAGAGCCAGTTGGTAATTACTA  800

seq1  AGCCAAGGTAGCCTTAAGGCTCAATGTGTAGCTGCCTCTGGGACCTTCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGGTAGCCTTAAGGCTCAATGTGTAGCTGCCTCTGGGACCTTCTA  850

seq1  TGAGGAAGGCTGTATTGCTATTCTCTAATCAAAACAGTTCTGTTTTATAT  900
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGAGGAAGGCTGTATTGCTATTCTCTAATC-AAACAGTTCTGTTTTATAT  899

seq1  TTTGAGACTTAAAAAAGCATGCATTTGAGGACTGGAGAGCTCAGTCGTTA  950
      |||||||||| ||||||||||||||||| |||||||||||||||||||||
seq2  TTTGAGACTT-AAAAAGCATGCATTTGA-GACTGGAGAGCTCAGTCGTTA  947

seq1  AGGGCACTGCTGCTCTTCCTGAGTCTTAAGTTCAATTCCCAGCAGCCACA  1000
        ||||||||||||||||||||||||||||||||  ||||||||||   |
seq2  --GGCACTGCTGCTCTTCCTGAGTCTTAAGTTCA--TCCCAGCAGCACAA  993

seq1  TGGTGGCTCCCAAGCATCTGTAATGAGATCCAATGCCCGCTTTTGTTTGA  1050
      |||| ||| |||||||||||| ||||||||  ||| ||||||||||||||
seq2  TGGT-GCT-CCAAGCATCTGT-ATGAGATC--ATG-CCGCTTTTGTTTGA  1037

seq1  TGCCTTTTCTGCCACCCAGCATACATGCAAATAGGCATACATGCAAATAG  1100
      |||  ||||||||||||||||||||||| |||||||||||||||  || |
seq2  TGC--TTTCTGCCACCCAGCATACATGC-AATAGGCATACATGC--ATTG  1082

seq1  GCAT-ACATGCATATACATAAAATATGTAAATAAACAAATCTTTTAAAAA  1149
      |||| |||||||| |||||||||| ||| |||||   ||||||||  |||
seq2  GCATAACATGCAT-TACATAAAAT-TGT-AATAA--CAATCTTTT--AAA  1125

seq1  GTATTTTTAAAACATATATTTGAAAAATACCAGAAATAA  1188
      |||  |||||||||| |||||| ||||||||||||||||
seq2  GTA--TTTAAAACAT-TATTTG-AAAATACCAGAAATAA  1160

seq1: chr18_36031075_36032190
seq2: B6Ng01-111D08.g_68_1169 (reverse)

seq1  GGCAGGTCAAGGCCTTGGCCGTCATCTCTAAGGCCCTTGGAAGCTCCCAT  50
      |||||||| ||||||| ||||||||||||||||||| |||||| |||  |
seq2  GGCAGGTC-AGGCCTT-GCCGTCATCTCTAAGGCCC-TGGAAG-TCCACT  46

seq1  GCTCCATAAGTGGCTGTGCCCTCAGTC-AGAGCATCCTTCTCTAGCATAC  99
      | ||||  || || || ||| |||||| ||||||| | ||||||||||| 
seq2  G-TCCAATAG-GGTTG-GCCTTCAGTCAAGAGCAT-CATCTCTAGCATA-  91

seq1  TGAATTGGGAAGAAGGAT-TACTGGAGTCCTCACCCTCAGGAAGCAGAGG  148
      |||||| ||||||||||| ||||| |||||||| |||||||||||||| |
seq2  TGAATT-GGAAGAAGGATATACTGAAGTCCTCA-CCTCAGGAAGCAGA-G  138

seq1  CAGGGGGATCTCTGTGAGTCTGGTCTACATAGTAAAAACCCTGACTTAAA  198
      || ||||||||||| ||||||||||   |||||||||||||   ||||||
seq2  CA-GGGGATCTCTG-GAGTCTGGTCACAATAGTAAAAACCCGTGCTTAAA  186

seq1  AAATTAGAGCTGGGCGTGGTGGC-TCACGCCTTTAATCCCAGCACTTGG-  246
      |||||||||||||||| |||||| |||| ||||||||||  |||||||| 
seq2  AAATTAGAGCTGGGCGGGGTGGCTTCACCCCTTTAATCCAGGCACTTGGA  236

seq1  GAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAG-CCTGGTCTACAG  295
      |||   ||||||||||||||| |||||| |||||||| ||||||||||||
seq2  GAGCAGGAGGCAGGTGGATTT-TGAGTTAGAGGCCAGCCCTGGTCTACAG  285

seq1  AGTGAGTT-CCAGGACAG-CCAGAGCTATATAGAGAAACCCTGTCTTGAA  343
      |||||||| ||||||||| ||||||||||||||||||| |||||||||||
seq2  AGTGAGTTCCCAGGACAGCCCAGAGCTATATAGAGAAA-CCTGTCTTGAA  334

seq1  AAACCAAAAAAAAAAAAAAAAAAAAAAAATAGAAGAGGAAGAAGAGGAGG  393
      |||||     |||||||||||| |||||||||||||||||||||||||||
seq2  AAACC-----AAAAAAAAAAAACAAAAAATAGAAGAGGAAGAAGAGGAGG  379

seq1  GAGAGGGAAGGAAGAAGGAGAGGGGGAGGAAAGAAAAAGGAAGAGGGGAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGAAGGAAGAAGGAGAGGGGGAGGAAAGAAAAAGGAAGAGGGGAG  429

seq1  GAGGAAGGGGAGGAAGAGGGGGAGGAAAGAAAAAGTAGGTACAAAGATTC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGGGGAGGAAGAGGGGGAGGAAAGAAAAAGTAGGTACAAAGATTC  479

seq1  AAGCCCCATAAACAGGGCAGCACAATCTAGATTTCTGGAGGCAGCTGGCG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCATAAACAGGGCAGCACAATCTAGATTTCTGGAGGCAGCTGGCG  529

seq1  GGCAAGAGACGTGTTATGAAAGAATTCTGGGGTATTTGTTCATCAGTTAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGAGACGTGTTATGAAAGAATTCTGGGGTATTTGTTCATCAGTTAT  579

seq1  TCTAGGGTTAAGAACTGTTGGTTGTTGGATGCTGTGGCCCGAGACCCCAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGGTTAAGAACTGTTGGTTGTTGGATGCTGTGGCCCGAGACCCCAG  629

seq1  CTGGAATCCACTCTGAACTAGATCATTCTTCCCAGGGAACCAATGCCCAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATCCACTCTGAACTAGATCATTCTTCCCAGGGAACCAATGCCCAG  679

seq1  TAGTTTCTCGAATGCATTTTTAGACCGTGAAAGGGTGCTCTTAGGTGAAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCTCGAATGCATTTTTAGACCGTGAAAGGGTGCTCTTAGGTGAAA  729

seq1  CATTAATAAACTGCATCACATTGGTGGGGAAGATTACATGTAAATTAGAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATAAACTGCATCACATTGGTGGGGAAGATTACATGTAAATTAGAT  779

seq1  AATTAAAAATGAAGCTGATGCCTGCTGCTCGGTGCTATTACCTCTTATTA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAAATGAAGCTGATGCCTGCTGCTCGGTGCTATTACCTCTTATTA  829

seq1  AAAGTTATGAGAGGTGGCCTTGGGTGGCAGCTAGCAGAGGGCTTCTGAGG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTATGAGAGGTGGCCTTGGGTGGCAGCTAGCAGAGGGCTTCTGAGG  879

seq1  GGGACAGCAGAGGCAAAGGGCTGTCTACTAGAACCCAGTTTGATCTCACA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGCAGAGGCAAAGGGCTGTCTACTAGAACCCAGTTTGATCTCACA  929

seq1  GGTCCAGCAGGTGGGGAAACAGGATGCTCCTGTATCCAGTCTACAGATAG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAGCAGGTGGGGAAACAGGATGCTCCTGTATCCAGTCTACAGATAG  979

seq1  AGGGTCACAGCCCTGAACATGGACCCAAGGGTCTGTCTCTTCCTAGAGTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCACAGCCCTGAACATGGACCCAAGGGTCTGTCTCTTCCTAGAGTT  1029

seq1  CCCGTGTTTCTTCATCTGTGAAAGAGAAGAGAACAACGTGGTTCCCAGAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTGTTTCTTCATCTGTGAAAGAGAAGAGAACAACGTGGTTCCCAGAA  1079

seq1  CACTGGGGAGGGCCATGGAATTC  1116
      |||||||||||||||||||||||
seq2  CACTGGGGAGGGCCATGGAATTC  1102