BAC Information

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BAC

Clone NameB6Ng01-111D19
Chromosome18 (Build37)
Map Location 50,942,459 - 51,079,764
singlet/doubletdoublet
Overlap genenone
Upstream geneDmxl1, Tnfaip8, Hsd17b4, LOC626721, LOC667233, Gm93, Hdhd1a, LOC100042373
Downstream geneLOC100042385, Prr16, EG240289
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111D19.bB6Ng01-111D19.g
ACCDH917633DH917634
length950847
definitionDH917633|Mus musculus domesticus DNA, BAC clone: B6Ng01-111D19, 5' end.DH917634|Mus musculus domesticus DNA, BAC clone: B6Ng01-111D19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,078,823 - 51,079,764)(50,942,459 - 50,943,021)
sequence
gaattcaaaactttcagcttttatacactttttagcaactttgatttctt
tgtattgtgatatttttatctccaaaaaacaaaaaaataaatgtttctgc
cacttgctgaatttttttctgaacttgagctgtaatatcatgttggttgt
ctgttgaagaggtatgctttataaccatgtcttagcaaggtcacccttct
agtaagtggatattgggatggacagctcacagatgcctcgggattagtgc
atccatttttctcttcttttcattatcctgccagcaatctcctcacttaa
ctagcttcttgaaattttattgtccccctccccagattcagcatatattt
attaattgcttgtgctttggtgtaggcatgaaacaagcattcacccacag
cgttggtttggagacttacatgatttcactgtattcaaaaactcatatag
tgatgcaatgttaaattaagactcagatatattgtcagtgcaaaagacag
agtcctgaaaggaacaatgtgaccttgcttccgacatatttgaatattaa
gaaagccacattgcttattttttttgtccctccccttctcatctcgttta
ttttaagtagcgaggtagtatatttttgaaaacaaaataaaacacatctt
tattttaaactaagccacaaatttttgagccaagattgttttaatcaggg
tttgtgctgtttcagaataataaaaatggggctattgacacagtttccat
tagcaattggggttctctcaagatttttaggcaacttactctatcattat
atttacttaaaatgattatcatcatatgtcctttcaaggttagttatttt
tgaagatatttttaaggttttaaataatacgttatgtctttgtgtgtctc
tgtgtgtgcgtgtgtgttgtgattgtgtcttgtaatatgtgttaaacaaa

gaattccatggtagaatattcacttctcaatattggagaatacaatcacc
aaattaaagtagtctggaagccacagcagcagcggtcgccatcttggtcc
gggacccgccgaacttaggaaattagtctgaacaggtgagagggtgcgcc
agagaacctgacagcttctggaacaggcagaagcacagaggggctgaggc
agcaccctgtgtgggccggggacagccggccaccttccggaccggaggac
aggtgcccacccagctggggaggcggcctaagccacagcagcagcggtcg
ccatcttggtccgggacccgccgaacttaggaaattagtctgaacaggtg
agagggtgcgccagagaacctgacagcctctggaacaggcagaagcacag
aggggctgaggcagcaccctgtgtgggccggggacagccggccaccttcc
ggaccggaggacaggtgcccgcccggctggggaggcgacctaagccacag
cagcagcggtcgccatcttggtccgggacccgccgaacttaggaaattag
tctgaacaggtgagagggtgcgccagagaacctgacagcttccggaacag
gcagaagcacagaggcgctgaggcagcaccctgtgtgggccggggacagc
cggccaccttccggaccggaggacaggtgcccacccggctggggaggcgg
cctaagccacagcagcagcggtcgccatctttgttcccgggactccaaag
aaatttaggaatttagtctgcttaggtgagagtctgtaccacctgggaac
tgccaaagcaacacagtgtctgagaagggtcctgttttgggcccttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_51078823_51079764
seq2: B6Ng01-111D19.b_39_988 (reverse)

seq1  TTTGTTT-ACACATA-TAC-AGACACATTCAC-ACACACACGCACACACA  46
      ||||||| ||||||| ||| ||||||| |||| |||||||||||||||||
seq2  TTTGTTTAACACATATTACAAGACACAATCACAACACACACGCACACACA  50

seq1  GAGACACACAAAGACATAAACGTATTATTTAAAA-CTTAAAAATATC-TC  94
      ||||||||||||||||| |||||||||||||||| |||||||||||| ||
seq2  GAGACACACAAAGACAT-AACGTATTATTTAAAACCTTAAAAATATCTTC  99

seq1  AAAAATAACTAACCTTTGAAAGACATATGATGATAATCATTTTAAGTAAT  144
      ||||||||||||||||  || |||||||||||||||||||||||||||| 
seq2  AAAAATAACTAACCTTGAAAGGACATATGATGATAATCATTTTAAGTAAA  149

seq1  AATAATGATAGAGTTAAGTTGCCTAAAAATCTTGAGAGAA-CCCAAATGC  193
       |||||||||||| |||||||||||||||||||||||||| ||||| |||
seq2  TATAATGATAGAG-TAAGTTGCCTAAAAATCTTGAGAGAACCCCAATTGC  198

seq1  TAATGGAAACTGTGTCAATAGCCCCATTTTTATTATTCTG-AACAGCACA  242
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TAATGGAAACTGTGTCAATAGCCCCATTTTTATTATTCTGAAACAGCACA  248

seq1  AACCCTGATTAAAACAATCTTGGCTC-AAAATTTGTGGCTTAGTTTAAAA  291
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AACCCTGATTAAAACAATCTTGGCTCAAAAATTTGTGGCTTAGTTTAAAA  298

seq1  TAAAGATGTGTTTTATTTTGTTTTC-AAAATATACTACCTCGCTACTTAA  340
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TAAAGATGTGTTTTATTTTGTTTTCAAAAATATACTACCTCGCTACTTAA  348

seq1  AATAAACGAGATGAGAAGGGGAGGGACAAAAAAAATAAGCAATGTGGCTT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACGAGATGAGAAGGGGAGGGACAAAAAAAATAAGCAATGTGGCTT  398

seq1  TCTTAATATTCAAATATGTCGGAAGCAAGGTCACATTGTTCCTTTCAGGA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATATTCAAATATGTCGGAAGCAAGGTCACATTGTTCCTTTCAGGA  448

seq1  CTCTGTCTTTTGCACTGACAATATATCTGAGTCTTAATTTAACATTGCAT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTTTTGCACTGACAATATATCTGAGTCTTAATTTAACATTGCAT  498

seq1  CACTATATGAGTTTTTGAATACAGTGAAATCATGTAAGTCTCCAAACCAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATATGAGTTTTTGAATACAGTGAAATCATGTAAGTCTCCAAACCAA  548

seq1  CGCTGTGGGTGAATGCTTGTTTCATGCCTACACCAAAGCACAAGCAATTA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGTGGGTGAATGCTTGTTTCATGCCTACACCAAAGCACAAGCAATTA  598

seq1  ATAAATATATGCTGAATCTGGGGAGGGGGACAATAAAATTTCAAGAAGCT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATATGCTGAATCTGGGGAGGGGGACAATAAAATTTCAAGAAGCT  648

seq1  AGTTAAGTGAGGAGATTGCTGGCAGGATAATGAAAAGAAGAGAAAAATGG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAGTGAGGAGATTGCTGGCAGGATAATGAAAAGAAGAGAAAAATGG  698

seq1  ATGCACTAATCCCGAGGCATCTGTGAGCTGTCCATCCCAATATCCACTTA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTAATCCCGAGGCATCTGTGAGCTGTCCATCCCAATATCCACTTA  748

seq1  CTAGAAGGGTGACCTTGCTAAGACATGGTTATAAAGCATACCTCTTCAAC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGGGTGACCTTGCTAAGACATGGTTATAAAGCATACCTCTTCAAC  798

seq1  AGACAACCAACATGATATTACAGCTCAAGTTCAGAAAAAAATTCAGCAAG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACCAACATGATATTACAGCTCAAGTTCAGAAAAAAATTCAGCAAG  848

seq1  TGGCAGAAACATTTATTTTTTTGTTTTTTGGAGATAAAAATATCACAATA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGAAACATTTATTTTTTTGTTTTTTGGAGATAAAAATATCACAATA  898

seq1  CAAAGAAATCAAAGTTGCTAAAAAGTGTATAAAAGCTGAAAGTTTTGAAT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAATCAAAGTTGCTAAAAAGTGTATAAAAGCTGAAAGTTTTGAAT  948

seq1  TC  942
      ||
seq2  TC  950

seq1: chr18_50942459_50943021
seq2: B6Ng01-111D19.g_70_632

seq1  GAATTCCATGGTAGAATATTCACTTCTCAATATTGGAGAATACAATCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGTAGAATATTCACTTCTCAATATTGGAGAATACAATCACC  50

seq1  AAATTAAAGTAGTCTGGAAGCCACAGCAGCAGCGGTCGCCATCTTGGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAGTAGTCTGGAAGCCACAGCAGCAGCGGTCGCCATCTTGGTCC  100

seq1  GGGACCCGCCGAACTTAGGAAATTAGTCTGAACAGGTGAGAGGGTGCGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCCGCCGAACTTAGGAAATTAGTCTGAACAGGTGAGAGGGTGCGCC  150

seq1  AGAGAACCTGACAGCTTCTGGAACAGGCAGAAGCACAGAGGGGCTGAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACCTGACAGCTTCTGGAACAGGCAGAAGCACAGAGGGGCTGAGGC  200

seq1  AGCACCCTGTGTGGGCCGGGGACAGCCGGCCACCTTCCGGACCGGAGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCTGTGTGGGCCGGGGACAGCCGGCCACCTTCCGGACCGGAGGAC  250

seq1  AGGTGCCCACCCAGCTGGGGAGGCGGCCTAAGCCACAGCAGCAGCGGTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCCCACCCAGCTGGGGAGGCGGCCTAAGCCACAGCAGCAGCGGTCG  300

seq1  CCATCTTGGTCCGGGACCCGCCGAACTTAGGAAATTAGTCTGAACAGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTGGTCCGGGACCCGCCGAACTTAGGAAATTAGTCTGAACAGGTG  350

seq1  AGAGGGTGCGCCAGAGAACCTGACAGCCTCTGGAACAGGCAGAAGCACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTGCGCCAGAGAACCTGACAGCCTCTGGAACAGGCAGAAGCACAG  400

seq1  AGGGGCTGAGGCAGCACCCTGTGTGGGCCGGGGACAGCCGGCCACCTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTGAGGCAGCACCCTGTGTGGGCCGGGGACAGCCGGCCACCTTCC  450

seq1  GGACCGGAGGACAGGTGCCCGCCCGGCTGGGGAGGCGACCTAAGCCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCGGAGGACAGGTGCCCGCCCGGCTGGGGAGGCGACCTAAGCCACAG  500

seq1  CAGCAGCGGTCGCCATCTTGGTCCGGGACCCGCCGAACTTAGGAAATTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCGGTCGCCATCTTGGTCCGGGACCCGCCGAACTTAGGAAATTAG  550

seq1  TCTGAACAGGTGA  563
      |||||||||||||
seq2  TCTGAACAGGTGA  563