BAC Information

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BAC

Clone NameB6Ng01-111F09
Chromosome18 (Build37)
Map Location 7,596,447 - 7,730,017
singlet/doubletdoublet
Overlap geneMpp7, LOC100039562
Upstream gene4921524L21Rik, LOC100039583, EG665053, Rab18, LOC620787, LOC100039635, Mkx, LOC664778, Armc4, EG622384
Downstream geneLOC100039606, Wac, LOC665121, LOC225134, LOC665132, EG433158, EG545242
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111F09.bB6Ng01-111F09.g
ACCDH917706DH917707
length1,1651,068
definitionDH917706|Mus musculus domesticus DNA, BAC clone: B6Ng01-111F09, 5' end.DH917707|Mus musculus domesticus DNA, BAC clone: B6Ng01-111F09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,596,447 - 7,597,618)(7,728,948 - 7,730,017)
sequence
gaattcagaagggtcaaatatcatcactttccagctttttgtcctgatta
ttccacacactgtctgtaggtaaacagagttttctctgtatagttgagac
tctgattgtaaaatactttatttgcataaaactttcctcatttgactgag
ggaggacctccagtggctaatgagaaggctccctggacactctaatacta
ctggtctagtcctaagaataaatagattatggacactaggcatcatggta
gacatctatagtctcaacacttaaaagtctgaggcaggagcatcatgagt
tatggactagtgtggactagataagtaaccctgaagaagatagtgaaagg
aaaagaaggagagggcaggaacgaaagggagcagcagaaccagaaaaagg
gcccggaaggtaaaaggcactcaccacccaaggctgtggcctgctcagtc
ccaggacctgacataaagactgaagggagaatgagttccacaagtgtgcc
aagggcatgcacttcccttgacagtaagaaccacagcagcaacttctgtg
tacagggctgcgtcccagcctcagactatggttgacagcattagatgctt
gatgagttatgcctgcatttaaatgaattgtttatgagtctggacaaagc
tatgtaagcacaagctgggttctcagcctatccccaatatctcaggccat
acctcaaaagttgatttataatggtcttttctaaatcgccatgaacataa
taatggtccagaaacacattttccaaagtttagatgtttaaactataaaa
taactgggccttccattctgggacagagccctgagcaaaccttgggcatg
aactctacaaccagtcccttaaaacccagaggaagatccactcccaggca
ctctaacacacgcaggatcccaggatcccaggagcttggtcacaccagaa
ctcttcagggtcccatgaggcagcttgactcccagggagctcagacacac
cctggagctcaggatcacagatccagaattacaggacaagagacagctgg
actctgaggagtctgaaccaaccaggatcccaggagactaggctctagtc
agactagccaggtcagtaacctagtgatatccgattggcgggaggccagc
ctagaacttagcaac

gaattcttaatatcctgcctctgcctcccaagtactggaatcatcgccat
ctcaccttttcttcttaatcaagctcttggttcaaaattctcaagtttct
cactgatgtctacctgcatgacctaatcatcttacaggacctctcccacc
tgctgtgctgtccatactaaaacccttcgaagacttcttaaaattgagta
aataaagctcaagtggttcacatggtatttgtcactctgcggcctgagtc
cttctcagtctaaacatggaacacaaggcatgaagttctagcagctttgc
aaaacaaggatttctaaagcctctgcagagggggaaagcctggccgacac
cttggcctgagcccttaggaatcagcgatagacttctggcctttagaact
gtgggtttgaaagtgcagggctatacctgaccaatgcaattacaatagat
aggacattaatacaacttcctctagatgtctcaatgtttgtcccagcctg
agcttcatgccctcccctgcacactctgagcatctactacatatctgatc
catagtttgctcaggacacatttttattttcctattaagtcatatgtttc
ctgatacctggcacataacagagacctcacagacactgggggagtaaaag
tgccctgccttcagttcagtatgctactcttcctgtcatcactatctcca
gtggtctagaaaggactggacccaacaaagcagaacaggtacagaaaata
ggtcctcaggttataaccaggaagaacaacagagagatgagaaaaaacta
tcctatgtaaagtggctattgaattatgtttgggtattttgtagcttttc
agattcctagggtatcactagcctagagtgggaatgtctgtattactgct
ttttttgagaaacggacagacacgagctgcagcttttatgcaagaagact
ctgatttgagctgcaatacacagtggacggttaatttgtactgccagtat
gattatcaatgagcaacagggtattgatgagcacacctttgggacatttc
agagatgttaactaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_7596447_7597618
seq2: B6Ng01-111F09.b_45_1209

seq1  GAATTCAGAAGGGTCAAATATCATCACTTTCCAGCTTTTTGTCCTGATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGGGTCAAATATCATCACTTTCCAGCTTTTTGTCCTGATTA  50

seq1  TTCCACACACTGTCTGTAGGTAAACAGAGTTTTCTCTGTATAGTTGAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACACACTGTCTGTAGGTAAACAGAGTTTTCTCTGTATAGTTGAGAC  100

seq1  TCTGATTGTAAAATACTTTATTTGCATAAAACTTTCCTCATTTGACTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTGTAAAATACTTTATTTGCATAAAACTTTCCTCATTTGACTGAG  150

seq1  GGAGGACCTCCAGTGGCTAATGAGAAGGCTCCCTGGACACTCTAATACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGACCTCCAGTGGCTAATGAGAAGGCTCCCTGGACACTCTAATACTA  200

seq1  CTGGTCTAGTCCTAAGAATAAATAGATTATGGACACTAGGCATCATGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTAGTCCTAAGAATAAATAGATTATGGACACTAGGCATCATGGTA  250

seq1  GACATCTATAGTCTCAACACTTAAAAGTCTGAGGCAGGAGCATCATGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCTATAGTCTCAACACTTAAAAGTCTGAGGCAGGAGCATCATGAGT  300

seq1  TATGGACTAGTGTGGACTAGATAAGTAACCCTGAAGAAGATAGTGAAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGACTAGTGTGGACTAGATAAGTAACCCTGAAGAAGATAGTGAAAGG  350

seq1  AAAAGAAGGAGAGGGCAGGAACGAAAGGGAGCAGCAGAACCAGAAAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGGAGAGGGCAGGAACGAAAGGGAGCAGCAGAACCAGAAAAAGG  400

seq1  GCCCGGAAGGTAAAAGGCACTCACCACCCAAGGCTGTGGCCTGCTCAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGGAAGGTAAAAGGCACTCACCACCCAAGGCTGTGGCCTGCTCAGTC  450

seq1  CCAGGACCTGACATAAAGACTGAAGGGAGAATGAGTTCCACAAGTGTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACCTGACATAAAGACTGAAGGGAGAATGAGTTCCACAAGTGTGCC  500

seq1  AAGGGCATGCACTTCCCTTGACAGTAAGAACCACAGCAGCAACTTCTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCATGCACTTCCCTTGACAGTAAGAACCACAGCAGCAACTTCTGTG  550

seq1  TACAGGGCTGCGTCCCAGCCTCAGACTATGGTTGACAGCATTAGATGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGCTGCGTCCCAGCCTCAGACTATGGTTGACAGCATTAGATGCTT  600

seq1  GATGAGTTATGCCTGCATTTAAATGAATTGTTTATGAGTCTGGACAAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGTTATGCCTGCATTTAAATGAATTGTTTATGAGTCTGGACAAAGC  650

seq1  TATGTAAGCACAAGCTGGGTTCTCAGCCTATCCCCAATATCTCAGGCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAGCACAAGCTGGGTTCTCAGCCTATCCCCAATATCTCAGGCCAT  700

seq1  ACCTCAAAAGTTGATTTATAATGGTCTTTTCTAAATCGCCATGAACATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAAAAGTTGATTTATAATGGTCTTTTCTAAATCGCCATGAACATAA  750

seq1  TAATGGTCCAGAAACACATTTTCCAAAGTTTAGATGTTTAAACTATAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGTCCAGAAACACATTTTCCAAAGTTTAGATGTTTAAACTATAAAA  800

seq1  TAACT-GGCCTTCCATTCTGGGACAGAGCCCTGAGCAAACCTTGGGCATG  849
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGGCCTTCCATTCTGGGACAGAGCCCTGAGCAAACCTTGGGCATG  850

seq1  AACTCTACAACCAGTCCCTTAAAACCCAGAGGAAGATCCACTCCCAGGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTACAACCAGTCCCTTAAAACCCAGAGGAAGATCCACTCCCAGGCA  900

seq1  CTCTAACACACGCAGGATCCCAGGATCCCAGGAGCTTGGTCACACCAG-A  948
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTCTAACACACGCAGGATCCCAGGATCCCAGGAGCTTGGTCACACCAGAA  950

seq1  CTC-TCAGGGTCCCAAGAGGCAGCTTGACTCCCA-GGAGCTCAGACACAC  996
      ||| ||||||||||| |||||||||||||||||| |||||||||||||||
seq2  CTCTTCAGGGTCCCATGAGGCAGCTTGACTCCCAGGGAGCTCAGACACAC  1000

seq1  CCTGGAGCTCAGGATCACAGAATCCAAGAATTACAGGACCACAGAGACAG  1046
      |||||||||||||||||||| |||| |||||||||||||   ||||||||
seq2  CCTGGAGCTCAGGATCACAG-ATCC-AGAATTACAGGAC--AAGAGACAG  1046

seq1  CTGGACTCTGAGGAGTTCTGACACAACCAGGATCACAGGAAGGAC-AGGC  1095
      ||||||||||||||| |||||  ||||||||||| |||||  ||| ||||
seq2  CTGGACTCTGAGGAG-TCTGAACCAACCAGGATCCCAGGA--GACTAGGC  1093

seq1  TCTAGTCAGACATAGCCAGGGCAGGTAGCACTAGTGATAATCAGA-TGGC  1144
      ||||||||||| |||||||| || ||| | |||||||| ||| || ||||
seq2  TCTAGTCAGAC-TAGCCAGGTCA-GTAAC-CTAGTGAT-ATCCGATTGGC  1139

seq1  GGGAGGCAAGCATAAGAACATTAGCAAC  1172
      ||||||| ||| | ||||| ||||||||
seq2  GGGAGGCCAGCCT-AGAAC-TTAGCAAC  1165


seq1: chr18_7728948_7730017
seq2: B6Ng01-111F09.g_67_1134 (reverse)

seq1  CCTTTAGTTAACCATCTCTGAAAATGT-CCAAAGGTGTGCCTCATCAATA  49
      ||||||||||| |||||||| |||||| ||||||||||| ||||||||||
seq2  CCTTTAGTTAA-CATCTCTG-AAATGTCCCAAAGGTGTG-CTCATCAATA  47

seq1  CCCTGGTTGCTCATTGATTATTCATACTGGCAGTTACAATTAACTGT-CA  98
      |||| |||||||||||| || |||||||||||||   ||||||| || ||
seq2  CCCT-GTTGCTCATTGA-TAATCATACTGGCAGTACAAATTAACCGTCCA  95

seq1  CTGTGTATTGCAGCTCATATCAGAGTTCTTCTTGCATAAAAGCTGCAGCT  148
      ||||||||||||||||| ||||||| ||||||||||||||||||||||||
seq2  CTGTGTATTGCAGCTCAAATCAGAG-TCTTCTTGCATAAAAGCTGCAGCT  144

seq1  CGTGTCTGTCCGTTTCTCAAAAACAGCAGT-ATACAGACATTCCCACTCT  197
      ||||||||||||||||||||||| |||||| |||||||||||||||||||
seq2  CGTGTCTGTCCGTTTCTCAAAAAAAGCAGTAATACAGACATTCCCACTCT  194

seq1  AGGCTAGTGATACCCTAGGAATCTG-AAAGCTACAAAATACCCAAACATA  246
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGGCTAGTGATACCCTAGGAATCTGAAAAGCTACAAAATACCCAAACATA  244

seq1  ATTCAATAGCCACTTTACATAGGATAGTTTTTTCTCATCTCTCTGTTGTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATAGCCACTTTACATAGGATAGTTTTTTCTCATCTCTCTGTTGTT  294

seq1  CTTCCTGGTTATAACCTGAGGACCTATTTTCTGTACCTGTTCTGCTTTGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGGTTATAACCTGAGGACCTATTTTCTGTACCTGTTCTGCTTTGT  344

seq1  TGGGTCCAGTCCTTTCTAGACCACTGGAGATAGTGATGACAGGAAGAGTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCCAGTCCTTTCTAGACCACTGGAGATAGTGATGACAGGAAGAGTA  394

seq1  GCATACTGAACTGAAGGCAGGGCACTTTTACTCCCCCAGTGTCTGTGAGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACTGAACTGAAGGCAGGGCACTTTTACTCCCCCAGTGTCTGTGAGG  444

seq1  TCTCTGTTATGTGCCAGGTATCAGGAAACATATGACTTAATAGGAAAATA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTTATGTGCCAGGTATCAGGAAACATATGACTTAATAGGAAAATA  494

seq1  AAAATGTGTCCTGAGCAAACTATGGATCAGATATGTAGTAGATGCTCAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTGTCCTGAGCAAACTATGGATCAGATATGTAGTAGATGCTCAGA  544

seq1  GTGTGCAGGGGAGGGCATGAAGCTCAGGCTGGGACAAACATTGAGACATC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCAGGGGAGGGCATGAAGCTCAGGCTGGGACAAACATTGAGACATC  594

seq1  TAGAGGAAGTTGTATTAATGTCCTATCTATTGTAATTGCATTGGTCAGGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGAAGTTGTATTAATGTCCTATCTATTGTAATTGCATTGGTCAGGT  644

seq1  ATAGCCCTGCACTTTCAAACCCACAGTTCTAAAGGCCAGAAGTCTATCGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCTGCACTTTCAAACCCACAGTTCTAAAGGCCAGAAGTCTATCGC  694

seq1  TGATTCCTAAGGGCTCAGGCCAAGGTGTCGGCCAGGCTTTCCCCCTCTGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCTAAGGGCTCAGGCCAAGGTGTCGGCCAGGCTTTCCCCCTCTGC  744

seq1  AGAGGCTTTAGAAATCCTTGTTTTGCAAAGCTGCTAGAACTTCATGCCTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTTTAGAAATCCTTGTTTTGCAAAGCTGCTAGAACTTCATGCCTT  794

seq1  GTGTTCCATGTTTAGACTGAGAAGGACTCAGGCCGCAGAGTGACAAATAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCATGTTTAGACTGAGAAGGACTCAGGCCGCAGAGTGACAAATAC  844

seq1  CATGTGAACCACTTGAGCTTTATTTACTCAATTTTAAGAAGTCTTCGAAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGAACCACTTGAGCTTTATTTACTCAATTTTAAGAAGTCTTCGAAG  894

seq1  GGTTTTAGTATGGACAGCACAGCAGGTGGGAGAGGTCCTGTAAGATGATT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTAGTATGGACAGCACAGCAGGTGGGAGAGGTCCTGTAAGATGATT  944

seq1  AGGTCATGCAGGTAGACATCAGTGAGAAACTTGAGAATTTTGAACCAAGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATGCAGGTAGACATCAGTGAGAAACTTGAGAATTTTGAACCAAGA  994

seq1  GCTTGATTAAGAAGAAAAGGTGAGATGGCGATGATTCCAGTACTTGGGAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGATTAAGAAGAAAAGGTGAGATGGCGATGATTCCAGTACTTGGGAG  1044

seq1  GCAGAGGCAGGATATTAAGAATTC  1070
      ||||||||||||||||||||||||
seq2  GCAGAGGCAGGATATTAAGAATTC  1068


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