BAC Information

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BAC

Clone NameB6Ng01-111G12
Chromosome18 (Build37)
Map Location 63,438,770 - 63,503,107
singlet/doubletdoublet
Overlap gene9030411M15Rik
Upstream geneHtr4, Fbxo38, Spink10, EG408198, 2700046A07Rik, Apcdd1, Napg, 9430028L06Rik
Downstream geneLOC627792, Txnl1, Wdr7, LOC629436, LOC667773, St8sia3, LOC433193, Onecut2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111G12.bB6Ng01-111G12.g
ACCDH917760DH917761
length1,138835
definitionDH917760|Mus musculus domesticus DNA, BAC clone: B6Ng01-111G12, 5' end.DH917761|Mus musculus domesticus DNA, BAC clone: B6Ng01-111G12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,501,918 - 63,503,107)(63,438,770 - 63,439,604)
sequence
gaattctacatggatgtcccacttctagctcttttgtggtcatgtgacct
ctccaagcttctgtttcctcttggtgtgcaagaagaatgagcaccgtttg
tcttgcaggacttcattttgatttctgtgggtgactgctaaagtcatcct
ggcgtccaggacaggccatgtcagtgttcacagctctgtgcctcttatga
gcttcgtgtctagattagacctcttaccattctgttctgtcttgacgtct
gaagccgcagacactatgatcagagcatttctgccattatccggatttat
tggggtcactcccacacagatacagttctttttctaagagaaattctagt
tctagctggaaggtgatgaaacataggtccatcttgggggaaaaaaaaag
ctttgtgaagttggtcatgaaataaagttaaaccaaggagacaaagacca
tcaggcgattcagcttgaccttatacttagcggagctagaagatggtccc
taccatggctgttgataaggtgtgaagaggcaagaccatcatgcactggg
tgggagtctcagttacgtgtggaatgagagctgggcagaccctgagaatt
ttatagagcaaagtcatatccatgcggagatgagagtgtctgacagtgtc
acctgatggtcactgtgctgcagattatactaagcaggtgtgttggccac
tcctacagccttcgtgtttaatgtggcttgctaggatctttggatatgtt
ttctctctatcatctggaacttgttaattttgttgtgggttacctgaagt
tacaacttaaaaaccaaaagaaagtcaactctagtcacttcggtttcctc
tagaaatacatccagtggttcccctaaagccctctccaagacatctgcaa
caaattaatgtgttccagatgatagctggaaaaaaaacaagaaaagaaag
caccctttagtttctgagacaaaagagatgtttgctttgtagttcatttc
cctgagataccaactaaacaaagtgtacacacaatggcatctactgagta
gatgcttagactccgttatgttcctccttgctgtattaactgactagtga
cctctcatgtggcttattgacagatagtggatgcagtt
gaattcactttgtggccaggctggctaagaactcatgaagatctgtctgc
tactgcctcccaagaggcattaaaggcatgtgccactttgcccagttttc
attatgtgctcttaattaatgaaagcatccagctgaggtcttccggaagg
agtctgttccttgtagacatcatgggcccagtaccctgtctgtgtcacac
ctgcactcacaggacaagtgggaaagcacacgttttccgttctgtgttca
gtgaggcattgcatgtgatgtatgtgaacacctgtgatgccttagacagc
atactcaacaatgagagagccatgggtgtgaaaatggagacttcccagcc
tccgggaacctccatttttctaacactatttaatgaaaaaacacttcgaa
agaatggaccatcatctagtgattgccatatgcagggatccatcccataa
tcagctcccaaacgctgacaccattgcatacactagcaagattttgctga
aaggacccagatatagctgtctcttgtgagactatgccggggcctagcaa
acacagaagtggatgatcacagtcagctattggatgggtcacacggcccc
caatggaggagctagagaaattactcaaggagctaaagggaactgcaacc
ctataggtgaaacaacattatgaactaaccaataccccggagctcttgac
tctagctgcatatgtatcaaaagatggcctagtcggccatcactgcaaag
agaggcccattggacttgcaaactgtatatgccccagtacaggggaaccc
cagggccaaaacgggggagtgggtgggtagtggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_63501918_63503107
seq2: B6Ng01-111G12.b_45_1182 (reverse)

seq1  AACTGCATCCACCTACTCTGTCAGTGAAAAACCACATGGAGAGGTCTACT  50
      ||||||||||| ||| |||||||   | || |||||| |||||||| |||
seq2  AACTGCATCCA-CTA-TCTGTCA---ATAAGCCACAT-GAGAGGTC-ACT  43

seq1  TAAGATTTCATGTTAATAACAGCAAAGGGAGGGAAACCATTACTGTGAGT  100
        ||   ||| |||||| |||||||  |||||   | ||| || | |   
seq2  --AG---TCA-GTTAAT-ACAGCAA--GGAGG---AACATAACGGAG---  78

seq1  TCTAAGCATCTACTTCAGTAGATGCCATTTTGTGGTTGGTTCACTTTGTT  150
      ||||||||||||| ||||||||||||||| |||     || ||||||| |
seq2  TCTAAGCATCTAC-TCAGTAGATGCCATTGTGT-----GTACACTTTG-T  121

seq1  TTAGTTTGGTTATCCCTTCCAGGGGAGAAATGAAACCTACAAAGCAAACA  200
      ||||||  | ||||     ||||   ||||||||  ||||||||||||||
seq2  TTAGTT--GGTATC----TCAGG---GAAATGAA--CTACAAAGCAAACA  160

seq1  TTCTTCTTTTTGTCTCAGAAAACTAAAGGGTTGCTTTTCTTTTTCTTGTT  250
       |||   ||||||||||| ||||||||||| ||||||   |||||||| |
seq2  -TCT--CTTTTGTCTCAG-AAACTAAAGGG-TGCTTT--CTTTTCTTG-T  202

seq1  TTTTTTTCCAGCTATCATCTGGAACACATTAATTTTGTTGCAGATTGTCT  300
      |||||||||||||||||||||||||||||||| ||||||||||| |||||
seq2  TTTTTTTCCAGCTATCATCTGGAACACATTAA-TTTGTTGCAGA-TGTCT  250

seq1  TGGAGAGGGCTTTTAGGGGAACCACTGGATGTATTTCTAGAGGAAACCGA  350
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGGGC-TTTAGGGGAACCACTGGATGTATTTCTAGAGGAAACCGA  299

seq1  AGTGACTAGAGTTGACTTTCTTTTGGTTTTTAAGTTGTAACTTCAGGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTAGAGTTGACTTTCTTTTGGTTTTTAAGTTGTAACTTCAGGTAA  349

seq1  CCCACAACAAAAATTAACAAGTTCCAGATGATAGAGAGAAAACATATCCA  450
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAAC-AAAATTAACAAGTTCCAGATGATAGAGAGAAAACATATCCA  398

seq1  AAGATCCTAGCAAGCCACATTAAACACGAAGGCTGTAGGAGTGGCCAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCCTAGCAAGCCACATTAAACACGAAGGCTGTAGGAGTGGCCAACA  448

seq1  CACCTGCTTAGTATAATCTGCAGCACAGTGACCATCAGGTGACACTGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCTTAGTATAATCTGCAGCACAGTGACCATCAGGTGACACTGTCA  498

seq1  GACACTCTCATCTCCGCATGGATATGACTTTGCTCTATAAAATTCTCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTCTCATCTCCGCATGGATATGACTTTGCTCTATAAAATTCTCAGG  548

seq1  GTCTGCCCAGCTCTCATTCCACACGTAACTGAGACTCCCACCCAGTGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCCCAGCTCTCATTCCACACGTAACTGAGACTCCCACCCAGTGCAT  598

seq1  GATGGTCTTGCCTCTTCACACCTTATCAACAGCCATGGTAGGGACCATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTCTTGCCTCTTCACACCTTATCAACAGCCATGGTAGGGACCATCT  648

seq1  TCTAGCTCCGCTAAGTATAAGGTCAAGCTGAATCGCCTGATGGTCTTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTCCGCTAAGTATAAGGTCAAGCTGAATCGCCTGATGGTCTTTGT  698

seq1  CTCCTTGGTTTAACTTTATTTCATGACCAACTTCACAAAGCTTTTTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGGTTTAACTTTATTTCATGACCAACTTCACAAAGCTTTTTTTTT  748

seq1  CCCCCAAGATGGACCTATGTTTCATCACCTTCCAGCTAGAACTAGAATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAAGATGGACCTATGTTTCATCACCTTCCAGCTAGAACTAGAATTT  798

seq1  CTCTTAGAAAAAGAACTGTATCTGTGTGGGAGTGACCCCAATAAATCCGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGAAAAAGAACTGTATCTGTGTGGGAGTGACCCCAATAAATCCGG  848

seq1  ATAATGGCAGAAATGCTCTGATCATAGTGTCTGCGGCTTCAGACGTCAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGGCAGAAATGCTCTGATCATAGTGTCTGCGGCTTCAGACGTCAAG  898

seq1  ACAGAACAGAATGGTAAGAGGTCTAATCTAGACACGAAGCTCATAAGAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACAGAATGGTAAGAGGTCTAATCTAGACACGAAGCTCATAAGAGG  948

seq1  CACAGAGCTGTGAACACTGACATGGCCTGTCCTGGACGCCAGGATGACTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGCTGTGAACACTGACATGGCCTGTCCTGGACGCCAGGATGACTT  998

seq1  TAGCAGTCACCCACAGAAATCAAAATGAAGTCCTGCAAGACAAACGGTGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGTCACCCACAGAAATCAAAATGAAGTCCTGCAAGACAAACGGTGC  1048

seq1  TCATTCTTCTTGCACACCAAGAGGAAACAGAAGCTTGGAGAGGTCACATG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTTCTTGCACACCAAGAGGAAACAGAAGCTTGGAGAGGTCACATG  1098

seq1  ACCACAAAAGAGCTAGAAGTGGGACATCCATGTAGAATTC  1190
      ||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAAAAGAGCTAGAAGTGGGACATCCATGTAGAATTC  1138

seq1: chr18_63438770_63439604
seq2: B6Ng01-111G12.g_68_902

seq1  GAATTCACTTTGTGGCCAGGCTGGCTAAGAACTCATGAAGATCTGTCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTGGCCAGGCTGGCTAAGAACTCATGAAGATCTGTCTGC  50

seq1  TACTGCCTCCCAAGAGGCATTAAAGGCATGTGCCACTTTGCCCAGTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCCTCCCAAGAGGCATTAAAGGCATGTGCCACTTTGCCCAGTTTTC  100

seq1  ATTATGTGCTCTTAATTAATGAAAGCATCCAGCTGAGGTCTTCCGGAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTGCTCTTAATTAATGAAAGCATCCAGCTGAGGTCTTCCGGAAGG  150

seq1  AGTCTGTTCCTTGTAGACATCATGGGCCCAGTACCCTGTCTGTGTCACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTTCCTTGTAGACATCATGGGCCCAGTACCCTGTCTGTGTCACAC  200

seq1  CTGCACTCACAGGACAAGTGGGAAAGCACACGTTTTCCGTTCTGTGTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTCACAGGACAAGTGGGAAAGCACACGTTTTCCGTTCTGTGTTCA  250

seq1  GTGAGGCATTGCATGTGATGTATGTGAACACCTGTGATGCCTTAGACAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGCATTGCATGTGATGTATGTGAACACCTGTGATGCCTTAGACAGC  300

seq1  ATACTCAACAATGAGAGAGCCATGGGTGTGAAAATGGAGACTTCCCAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCAACAATGAGAGAGCCATGGGTGTGAAAATGGAGACTTCCCAGCC  350

seq1  TCCGGGAACCTCCATTTTTCTAACACTATTTAATGAAAAAACACTTCGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGGAACCTCCATTTTTCTAACACTATTTAATGAAAAAACACTTCGAA  400

seq1  AGAATGGACCATCATCTAGTGATTGCCATATGCAGGGATCCATCCCATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGACCATCATCTAGTGATTGCCATATGCAGGGATCCATCCCATAA  450

seq1  TCAGCTCCCAAACGCTGACACCATTGCATACACTAGCAAGATTTTGCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCCCAAACGCTGACACCATTGCATACACTAGCAAGATTTTGCTGA  500

seq1  AAGGACCCAGATATAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACCCAGATATAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAA  550

seq1  ACACAGAAGTGGATGATCACAGTCAGCTATTGGATGGGTCACACGGCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAAGTGGATGATCACAGTCAGCTATTGGATGGGTCACACGGCCCC  600

seq1  CAATGGAGGAGCTAGAGAAATTACTCAAGGAGCTAAAGGGAACTGCAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAGGAGCTAGAGAAATTACTCAAGGAGCTAAAGGGAACTGCAACC  650

seq1  CTATAGGTGAAACAACATTATGAACTAACCAATACCCCGGAGCTCTTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGGTGAAACAACATTATGAACTAACCAATACCCCGGAGCTCTTGAC  700

seq1  TCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGCAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGCAAAG  750

seq1  AGAGGCCCATTGGACTTGCAAACTGTATATGCCCCAGTACAGGGGAACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCCATTGGACTTGCAAACTGTATATGCCCCAGTACAGGGGAACCC  800

seq1  CAGGGCCAAAACGGGGGAGTGGGTGGGTAGTGGTT  835
      |||||||||||||||||||||||||||||||||||
seq2  CAGGGCCAAAACGGGGGAGTGGGTGGGTAGTGGTT  835