BAC Information

Click to search

BAC

Clone NameB6Ng01-112N08
Chromosome18 (Build37)
Map Location 24,575,991 - 24,702,294
singlet/doubletdoublet
Overlap gene2700062C07Rik, BC021395
Upstream geneDtna, Mapre2, EG665813, LOC100040623, Zfp397, C230097I24Rik, Zfp35, Zfp191, D030070L09Rik, Galnt1, LOC665586
Downstream geneSlc39a6, Epl2, Mocos, Fhod3, 5730494M16Rik, AW554918, Brunol4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112N08.bB6Ng01-112N08.g
ACCDH918791DH918792
length293960
definitionDH918791|Mus musculus domesticus DNA, BAC clone: B6Ng01-112N08, 5' end.DH918792|Mus musculus domesticus DNA, BAC clone: B6Ng01-112N08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,702,005 - 24,702,294)(24,575,991 - 24,576,951)
sequence
gttcagtgacaagtgacaagtatctttgctctcttgagacacaccagaag
agggtatcagatcccattacaaatggttgtgagccgaggagtaagtgatc
taaaccactgagccatctctccagccccattcacacattacttcattgaa
aagataggatttactttagaatgctagggttgtcttcttcttcttcttct
tcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttc
ttcttctttttcttcttcttcctccccctcctcttcctcctcc
gaattcactacataagggcaagaacttgagtttaaccccagcacccaaat
acaatgctgggcttggtactgtgtgcttgtaatccaagctctggggtggg
ggatggagacagctggattcttggggttcactggccagccagcttaactg
aattggaaggccacaggtcccagtgagagactttgtctcataaaacaagt
tggatggttcctgaggaacaacattgaggttaatctgtgacctctgtgtg
aatgcatacaccagcaggcacacatgcacacacacacaaaccatcttcca
ggagataaccttgcctggataatgtgacctggaacccagtgacactgtag
aaacaactccagtgatgctagtgaaaaggcagagctgaggactgagaaga
atgtgagagaaccaaggctaagtgagcactgctacactctcatcataacc
aaagggaagacacaggatgagcagtgtcttgtaaggctacacccacaatg
cacttcactaaagccagaggatgctcgtggatgagacattcactagaaac
tgaacacagcaaacgaagggaaagtccttcgcctgcacagatgataaatg
gctctccagcatgcctgggatgtgacatttaccttagtcacattgcagag
aggatctatgtggctgcaggcatcagttggggctccaccaggtaactcat
ggctgctccaaagggcaagtgaggagagcttaagggaggaaactgtagga
ctgatgaacccgagaggcaaggaggcactcctggggtgcgatcttgttgc
acccttaaagctgtaggagttaaagagcaggatctgcatcaagaaccctg
tgggagctgtgggattagtgacgttgggtgcttgggtggagagcagttgt
ctctcctggacaaaatcctgaggccatgaacttccatctttcatattcta
taaagtcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_24702005_24702294
seq2: B6Ng01-112N08.b_55_347 (reverse)

seq1  GGAGGAGGAAGAGGAGGGGGAGGAAGAAGAAGAAA---AAGAAGAAGAAG  47
      |||||||||||||||||||||||||||||||||||   ||||||||||||
seq2  GGAGGAGGAAGAGGAGGGGGAGGAAGAAGAAGAAAAAGAAGAAGAAGAAG  50

seq1  AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA  100

seq1  GAAGAAGAAGACAACCCTAGCATTCTAAAGTAAATCCTATCTTTTCAATG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGAAGACAACCCTAGCATTCTAAAGTAAATCCTATCTTTTCAATG  150

seq1  AAGTAATGTGTGAATGGGGCTGGAGAGATGGCTCAGTGGTTTAGATCACT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATGTGTGAATGGGGCTGGAGAGATGGCTCAGTGGTTTAGATCACT  200

seq1  TACTCCTCGGCTCACAACCATTTGTAATGGGATCTGATACCCTCTTCTGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCTCGGCTCACAACCATTTGTAATGGGATCTGATACCCTCTTCTGG  250

seq1  TGTGTCTCAAGAGAGCAAAGATACTTGTCACTTGTCACTGAAC  290
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTCAAGAGAGCAAAGATACTTGTCACTTGTCACTGAAC  293

seq1: chr18_24575991_24576951
seq2: B6Ng01-112N08.g_69_1028

seq1  GAATTCACTACATAAGGGCAAGAACTTGAGTTTAACCCCAGCACCCAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTACATAAGGGCAAGAACTTGAGTTTAACCCCAGCACCCAAAT  50

seq1  ACAATGCTGGGCTTGGTACTGTGTGCTTGTAATCCAAGCTCTGGGGTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCTGGGCTTGGTACTGTGTGCTTGTAATCCAAGCTCTGGGGTGGG  100

seq1  GGATGGAGACAGCTGGATTCTTGGGGTTCACTGGCCAGCCAGCTTAACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGAGACAGCTGGATTCTTGGGGTTCACTGGCCAGCCAGCTTAACTG  150

seq1  AATTGGAAGGCCACAGGTCCCAGTGAGAGACTTTGTCTCATAAAACAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGAAGGCCACAGGTCCCAGTGAGAGACTTTGTCTCATAAAACAAGT  200

seq1  TGGATGGTTCCTGAGGAACAACATTGAGGTTAATCTGTGACCTCTGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGTTCCTGAGGAACAACATTGAGGTTAATCTGTGACCTCTGTGTG  250

seq1  AATGCATACACCAGCAGGCACACATGCACACACACACAAACCATCTTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATACACCAGCAGGCACACATGCACACACACACAAACCATCTTCCA  300

seq1  GGAGATAACCTTGCCTGGATAATGTGACCTGGAACCCAGTGACACTGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATAACCTTGCCTGGATAATGTGACCTGGAACCCAGTGACACTGTAG  350

seq1  AAACAACTCCAGTGATGCTAGTGAAAAGGCAGAGCTGAGGACTGAGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACTCCAGTGATGCTAGTGAAAAGGCAGAGCTGAGGACTGAGAAGA  400

seq1  ATGTGAGAGAACCAAGGCTAAGTGAGCACTGCTACACTCTCATCATAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGAGAACCAAGGCTAAGTGAGCACTGCTACACTCTCATCATAACC  450

seq1  AAAGGGAAGACACAGGATGAGCAGTGTCTTGTAAGGCTACACCCACAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAAGACACAGGATGAGCAGTGTCTTGTAAGGCTACACCCACAATG  500

seq1  CACTTCACTAAAGCCAGAGGATGCTCGTGGATGAGACATTCACTAGAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCACTAAAGCCAGAGGATGCTCGTGGATGAGACATTCACTAGAAAC  550

seq1  TGAACACAGCAAACGAAGGGAAAGTCCTTCGCCTGCACAGATGATAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACAGCAAACGAAGGGAAAGTCCTTCGCCTGCACAGATGATAAATG  600

seq1  GCTCTCCAGCATGCCTGGGATGTGACATTTACCTTAGTCACATTGCAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCAGCATGCCTGGGATGTGACATTTACCTTAGTCACATTGCAGAG  650

seq1  AGGATCTATGTGGCTGCAGGCATCAGTTGGGGCTCCACCAGGTAACTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTATGTGGCTGCAGGCATCAGTTGGGGCTCCACCAGGTAACTCAT  700

seq1  GGCTGCTCCAAAGGGCAAGTGAGGAGAGCTTAAGGGAGGAAACTGTAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTCCAAAGGGCAAGTGAGGAGAGCTTAAGGGAGGAAACTGTAGGA  750

seq1  CTGAGGAACCCGAGAGGCAAGGAGGCACTCCTGGGGTGCGATCTTGTTGC  800
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGAACCCGAGAGGCAAGGAGGCACTCCTGGGGTGCGATCTTGTTGC  800

seq1  ACCCTTAAAGCTGTAGGAGTTAAAGAGCAGGATCTGCAACAAGAACCCTG  850
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACCCTTAAAGCTGTAGGAGTTAAAGAGCAGGATCTGCATCAAGAACCCTG  850

seq1  TGGGAGCTGTGGGATAGGTGACGTTGGGTGCTTGGGTGGAGAGCAGTTGT  900
      |||||||||||||||  |||||||||||||||||||||||||||||||||
seq2  TGGGAGCTGTGGGATTAGTGACGTTGGGTGCTTGGGTGGAGAGCAGTTGT  900

seq1  CTCATCTGGACAAAAGCCTGAGGCCAGGAACTTCCAGCTTTCATAGTCTA  950
      |||  |||||||||| |||||||||| ||||||||| |||||||| ||||
seq2  CTCTCCTGGACAAAATCCTGAGGCCATGAACTTCCATCTTTCATATTCTA  950

seq1  TAGAAGTCAGC  961
      || ||||||||
seq2  TA-AAGTCAGC  960