BAC Information

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BAC

Clone NameB6Ng01-113B17
Chromosome18 (Build37)17 (Build37)
Map Location 39,985,866 - 39,986,94145,053,416 - 45,053,958
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneFgf1, EG545253, Arhgap26, Nr3c1, Pabpc2
Downstream geneLOC100041939, Yipf5, Kctd16, EG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113B17.bB6Ng01-113B17.g
ACCDH918986DH918987
length1,073696
definitionDH918986|Mus musculus domesticus DNA, BAC clone: B6Ng01-113B17, 5' end.DH918987|Mus musculus domesticus DNA, BAC clone: B6Ng01-113B17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(39,985,866 - 39,986,941)(45,053,416 - 45,053,958)
sequence
gaattcttcatgtgactctgtagtctcctatcccccatcctcagttctgt
tcccacatccttaaagttcagaaagtgtgattatcaacgttacaaacaaa
actgtctatgtcagaaccccctcataccaattcagaaacccactgatttc
tctagtcaccccaagatcctttttaattctttgtgtttttgaacttgtag
actagactgatttaatcttttgtggtttgtttgtttgcttgtttgcttgc
ttgttttgtatgatatactttcttttccaagggtcattagaatgtcattc
ctgttttgtaataatttatacaaaataattatataggcgattctgcaaag
aaagatcaaaatcttaatatttattcatgtacttgtttttgagtcaagct
ctggctggccagcaactttaagaattctgctggccttcctctgccttcta
aatgctgaggtaaaaatcatatgtgttaccatacctactctaaactttaa
ttttaaggagcaaaataacttatttatgctctttagatttttttctttta
aattgcttctggggatttccacctttgtatgtctgtgatttattttgtta
tttttggtattcgaattaattttatcttcaagtattttgaaagttgtatt
ttatgttactatccttaacccttggtatgcagaagcctgtgacaacccaa
ctctgctttctctctatctgtaactctctgctcaaccctcacagctcaac
cttctctgcctgactgcataagaaatcatctttactttggaaacacaaat
atttaactgggctatgactcagtgctggttgccttcaacgattttgcttg
ctttgtgataaacacccttgatctggaaattcagatattcatctcagcac
atgtgcttctattatattcacctttattttggttcttcatgcttcttatt
tccatctgtctttgatccaggggagtggctccctctcttcccattaagct
gccaatgaagtcctacgctagccatacttttttgcctctgatcgcatgaa
ggtttttattatagaaatattgg
gaattcctcttggaggattttacctttgatgagtatgaagtgtccctcct
tgatttttttgataactttgggttggacgtggattttattcgatattaga
atggctactccagcttgtttcttcagaccatttgcttgcaaaattgtttt
ccagcctttcattctgaggtagtgtctgtctttttccctgagatgggttt
ccagtaagcagaaaaatgttggatcctctttgtgtagccagtctgttagt
ctatgtctttttattggggaattaagtccgttgatattaagagatattaa
ggaaaagtaattgttgcttcctattatttttgtttttagagttggcattc
tgttcttgtggctatcttcttttaggtttgttgaaggattactttcttga
tttttctaggaagtggtttccgtccttgtattggtttttttttttttctt
ctgttattatcctttgaagggctggattcatggaaagataatgtttcagt
ttggttttgttgtggaatactttggtttctccatctatggtaattgaaag
tttggctgggtatagtaagctgggctggcatttgtgctctcatagtgtct
gtataacatctgttcaagatcttctggctttcatagtcttctggtgaaaa
gtctggtttaatttctgataggcctgcctttatatgttacttgacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_39985866_39986941
seq2: B6Ng01-113B17.b_47_1119

seq1  GAATTCTTCATGTGACTCTGTAGTCTCCTATCCCCCATCCTCAGTTCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATGTGACTCTGTAGTCTCCTATCCCCCATCCTCAGTTCTGT  50

seq1  TCCCACATCCTTAAAGTTCAGAAAGTGTGATTATCAACGTTACAAACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACATCCTTAAAGTTCAGAAAGTGTGATTATCAACGTTACAAACAAA  100

seq1  ACTGTCTATGTCAGAACCCCCTCATACCAATTCAGAAACCCACTGATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTATGTCAGAACCCCCTCATACCAATTCAGAAACCCACTGATTTC  150

seq1  TCTAGTCACCCCAAGATCCTTTTTAATTCTTTGTGTTTTTGAACTTGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTCACCCCAAGATCCTTTTTAATTCTTTGTGTTTTTGAACTTGTAG  200

seq1  ACTAGACTGATTTAATCTTTTGTGGTTTGTTTGTTTGCTTGTTTGCTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGACTGATTTAATCTTTTGTGGTTTGTTTGTTTGCTTGTTTGCTTGC  250

seq1  TTGTTTTGTATGATATACTTTCTTTTCCAAGGGTCATTAGAATGTCATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTATGATATACTTTCTTTTCCAAGGGTCATTAGAATGTCATTC  300

seq1  CTGTTTTGTAATAATTTATACAAAATAATTATATAGGCGATTCTGCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTGTAATAATTTATACAAAATAATTATATAGGCGATTCTGCAAAG  350

seq1  AAAGATCAAAATCTTAATATTTATTCATGTACTTGTTTTTGAGTCAAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCAAAATCTTAATATTTATTCATGTACTTGTTTTTGAGTCAAGCT  400

seq1  CTGGCTGGCCAGCAACTTTAAGAATTCTGCTGGCCTTCCTCTGCCTTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGGCCAGCAACTTTAAGAATTCTGCTGGCCTTCCTCTGCCTTCTA  450

seq1  AATGCTGAGGTAAAAATCATATGTGTTACCATACCTACTCTAAACTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGAGGTAAAAATCATATGTGTTACCATACCTACTCTAAACTTTAA  500

seq1  TTTTAAGGAGCAAAATAACTTATTTATGCTCTTTAGATTTTTTTCTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGGAGCAAAATAACTTATTTATGCTCTTTAGATTTTTTTCTTTTA  550

seq1  AATTGCTTCTGGGGATTTCCACCTTTGTATGTCTGTGATTTATTTTGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTTCTGGGGATTTCCACCTTTGTATGTCTGTGATTTATTTTGTTA  600

seq1  TTTTTGCTATTCGAATTAATTTTATCTTCAAGTATTTTGAAAGTTGTATT  650
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGTATTCGAATTAATTTTATCTTCAAGTATTTTGAAAGTTGTATT  650

seq1  TTATGTTACTATCCTTAACCCTTGGTATGCAGAAGCCTGTGACAACCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTACTATCCTTAACCCTTGGTATGCAGAAGCCTGTGACAACCCAA  700

seq1  CTCTGCTTTCTCTCTATCTGTAACTCTCTGCTCAACCCTCACAGCTCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTTTCTCTCTATCTGTAACTCTCTGCTCAACCCTCACAGCTCAAC  750

seq1  CTTCTCTGCCTGACTGCATAAGAAATCATCTTTACTTTGGAAACACAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGCCTGACTGCATAAGAAATCATCTTTACTTTGGAAACACAAAT  800

seq1  ATTTAACTGGGCTATGACTCAGTGCTGGTTGCCTTTCAACGATTTTGCTT  850
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATTTAACTGGGCTATGACTCAGTGCTGGTTGCC-TTCAACGATTTTGCTT  849

seq1  GCTTTGTGATAAACACCCTTGATCTGGAAATTCAGATATTCATCTCAGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCTTTGTGATAAACACCCTTGATCTGGAAATTCAGATATTCATCTCA-GC  898

seq1  ACATGTGCTTCTATTATATTCACCTTTTATTTTGGTTCTTCATGCTTCTT  950
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACATGTGCTTCTATTATATTCACC-TTTATTTTGGTTCTTCATGCTTCTT  947

seq1  ATTTCCATCTGTCTTTTGATCCAGGGGAGTGGCTCCCTCTCTT-CCTTTA  999
      ||||||||||||| ||||||||||||||||||||||||||||| || |||
seq2  ATTTCCATCTGTC-TTTGATCCAGGGGAGTGGCTCCCTCTCTTCCCATTA  996

seq1  AGCTGCCAATGAAGTTCCTACGCTAGCCATAC-TTTTTGCTCCTGATCGC  1048
      |||||||||||||| ||||||||||||||||| |||||||  ||||||||
seq2  AGCTGCCAATGAAG-TCCTACGCTAGCCATACTTTTTTGCCTCTGATCGC  1045

seq1  AATGAA-GTTTTAATTATAGTAATATTGG  1076
       ||||| ||||| ||||||| ||||||||
seq2  -ATGAAGGTTTTTATTATAGAAATATTGG  1073

seq1: chr17_45053416_45053958
seq2: B6Ng01-113B17.g_207_763 (reverse)

seq1  GGTCAAGTAACATATAAAGGCAGGCCTATCAG-AATTACACCAGACTTTT  49
      |||||||||||||||||||||||||||||||| ||||| |||||||||||
seq2  GGTCAAGTAACATATAAAGGCAGGCCTATCAGAAATTAAACCAGACTTTT  50

seq1  CACCAG-AGACTATGAAAGACAGAAGATCCTGGACAGATGTTAT----AC  94
      |||||| |||||||||||| ||||||||| || |||||||||||    ||
seq2  CACCAGAAGACTATGAAAGCCAGAAGATCTTGAACAGATGTTATACAGAC  100

seq1  CCTAAGAGAACACAAATGCCAGCCCATGCTT-CTATACCCAGCCAAACTC  143
       ||| |||| |||||||||||||||| |||| ||||||||||||||||| 
seq2  ACTATGAGAGCACAAATGCCAGCCCA-GCTTACTATACCCAGCCAAACTT  149

seq1  TCAATTACCATAGATGGAGAAACTAAAGTATTCCATGACAAAACCAAATT  193
      ||||||||||||||||||||||| |||||||||||  ||||||||||| |
seq2  TCAATTACCATAGATGGAGAAACCAAAGTATTCCACAACAAAACCAAACT  199

seq1  CACACATTATCTTTCCTCGAATCCAGCCCTTCAAAGGATAATAACAG---  240
       | |||||||||||||  |||||||||||||||||||||||||||||   
seq2  GAAACATTATCTTTCCATGAATCCAGCCCTTCAAAGGATAATAACAGAAG  249

seq1  -----AAAAAAAACCAATACAAGGACGGAAACCACGCCCTACAAAAAGCA  285
           ||||||||||||||||||||||||||||||  |||| ||||| ||
seq2  AAAAAAAAAAAAACCAATACAAGGACGGAAACCACTTCCTAGAAAAATCA  299

seq1  AGAAAGTAATCCTTCAACAAACCAAAAAGAAGACAGCCACAAGAACAGAA  335
      ||||||||||||||||||||||| ||||||||| ||||||||||||||||
seq2  AGAAAGTAATCCTTCAACAAACCTAAAAGAAGATAGCCACAAGAACAGAA  349

seq1  TGCCAACTCTAACAACAGAAATAATAGGAAGCAACAATTACTTTTCCTTA  385
      |||||||||||| |||| ||||||||||||||||||||||||||||||||
seq2  TGCCAACTCTAAAAACAAAAATAATAGGAAGCAACAATTACTTTTCCTTA  399

seq1  ATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACT  435
      ||||||||||||||||| ||||| ||||||||||||||||||||||||||
seq2  ATATCTCTTAATATCAACGGACTTAATTCCCCAATAAAAAGACATAGACT  449

seq1  AACAGACTGGCTATACAAACAGGACTCAACATTTTGCTGCTTACAGGAAA  485
      ||||||||||||| ||||| ||||  ||||||||| |||||||| |||||
seq2  AACAGACTGGCTACACAAAGAGGATCCAACATTTTTCTGCTTACTGGAAA  499

seq1  TCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAA  535
       |||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCCATCTCAGGGAAAAAGACAGACACTACCTCAGAATGAAAGGCTGGAAA  549

seq1  ACAATTTT  543
      ||||||||
seq2  ACAATTTT  557