BAC Information

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BAC

Clone NameB6Ng01-113H13
Chromosome18 (Build37)
Map Location 42,376,165 - 42,529,199
singlet/doubletdoublet
Overlap geneLars, EG625929, LOC100042757, Rbm27
Upstream geneLOC677182, LOC100041988, LOC100041997, Prelid2, Gm851, Sh3rf2, EG435561, Plac8l1, LOC433177
Downstream genePou4f3, LOC100042767, LOC100042027, Tcerg1, Gpr151, LOC100042037, Ppp2r2b, LOC100042046, LOC100042051, EG666594, Stk32a, Dpysl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113H13.bB6Ng01-113H13.g
ACCDH919258DH919259
length1,173780
definitionDH919258|Mus musculus domesticus DNA, BAC clone: B6Ng01-113H13, 5' end.DH919259|Mus musculus domesticus DNA, BAC clone: B6Ng01-113H13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,376,165 - 42,377,334)(42,528,423 - 42,529,199)
sequence
gaattcaaaaggtaaattctgtcccgtgcttcatcattttaactatgcat
gcagaaaaaagaaagaaagaaagaaaaagaaaagaaaagaaaaaaaagac
cacatgtcttttaattacaaacaactaggttcaatatatttttttgtaag
aaagcttcagaaatgttgaaagatggtaatttttctcttggcatccatgt
atgagctaccaaggataacaaaggacactctctgcctggagagaattgaa
aaaggccacctgtctgttccctcccttacacctttaatatcctaaaacca
aaaatatcttaagcagacaatactgagaaaatttgcatcacctcaaagtg
gctccgcagggttgtcagggtaatgtgctgccagacggggtagttctttg
ccacatagatggtgcagtgtgagggcctctgagctggctgcttgtcagtc
ttctgcacaggagaaaagaaaaccatgtgttcatgtgtaaaccaatgaga
acactcaacacctagatcatcacccttagcagttaggaaatatgtgcaca
gacccttggcacttagaacgcacacacttcagaccttcaactgttagaac
atacatttttcagacctttaacagagcatacacgctccagacctttaact
attagaacatacatgtttcagatcttttaacagaatatacatgcttcaga
cctttaactgttagaacatacatgtttcaggcctttaacagttagaacat
acgcacttcagacttttaactgttagaacatacgtgctccacaccataca
tgctccagacctttaagtttagaacatagatgcttcagagctgtatccat
ggtgcacacagcactgcccattttaatcacttagtgttcatgagtttgta
tctgactgcccatgataaggaatgatctctaataaaaactgcttaaagga
tgacatcaccttccctttagctggcatcatgtattctgagcccgtaatcc
aaaggtcatgtgctacttccatgagaatactgtgaggaacgggatcaagg
acctcattccacgagacctgccacaggtcatgaggcatgctgaattgaat
taggcttcaaaaaaaaaaaaaaatttaaaataaaacaaccttgcttttca
ggccttgcttacagtttcccaca
gaattccaaacacactcggaagttgacagagagcaatgaacctcatgtgc
ccagtatcaggtattcccattgcatgcagaacacagtagcagttctggcc
agtgagacccaagagctctctcatggtattttgtttgttattttatgtgc
atgggtgttttgcctgtgcaccgtgtgcatgcagtgcctgaagaggccac
aagagggcaacagatcttctggagtggagttgaaggcagtcgctttgcac
cagtgagtgatcttcactgctgagtcatctctccatccctcctgtgttat
tccaaagcaaatacccactagaccacttccataattgtatcagaatgcat
ctctccagaattaaaagttcttcgagaaagtcacaaaacgttatcacata
cgaacacttgtcaataatttcatagttatctcatttctgttaatttttaa
ccaacagggtggccataaaactcggaaacagagccaacaatttatcagcg
tgacagtttgtgacatgatcatgccctgtcgtgcttgggactttgataac
agtatataaaaatgttggtctcaggctggtgtctcagaacagagaaagaa
tccaatttaagggtcaaggaaagctctcccaaggaaggaatgcaagggcc
gctatctgaagggtgtgtaaggaaagataattgaggtagagagaaacttt
ccctgacttgacggagcagcaagataggggtcagaacacagagatgaaga
caccaggggaagattggggttccgtgttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_42376165_42377334
seq2: B6Ng01-113H13.b_48_1220

seq1  GAATTCAAAAGGTAAATTCTGTCCCGTGCTTCATCATTTTAACTATGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGGTAAATTCTGTCCCGTGCTTCATCATTTTAACTATGCAT  50

seq1  GCAGAAAAAAGAAAGAAAGAAAGAAAAAGAAAAGAAAAGAAAAAAAAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAAAAGAAAGAAAGAAAGAAAAAGAAAAGAAAAGAAAAAAAAGAC  100

seq1  CACATGTCTTTTAATTACAAACAACTAGGTTCAATATATTTTTTTGTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTCTTTTAATTACAAACAACTAGGTTCAATATATTTTTTTGTAAG  150

seq1  AAAGCTTCAGAAATGTTGAAAGATGGTAATTTTTCTCTTGGCATCCATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTCAGAAATGTTGAAAGATGGTAATTTTTCTCTTGGCATCCATGT  200

seq1  ATGAGCTACCAAGGATAACAAAGGACACTCTCTGCCTGGAGAGAATTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTACCAAGGATAACAAAGGACACTCTCTGCCTGGAGAGAATTGAA  250

seq1  AAAGGCCACCTGTCTGTTCCCTCCCTTACACCTTTAATATCCTAAAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCACCTGTCTGTTCCCTCCCTTACACCTTTAATATCCTAAAACCA  300

seq1  AAAATATCTTAAGCAGACAATACTGAGAAAATTTGCATCACCTCAAAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCTTAAGCAGACAATACTGAGAAAATTTGCATCACCTCAAAGTG  350

seq1  GCTCCGCAGGGTTGTCAGGGTAATGTGCTGCCAGACGGGGTAGTTCTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCGCAGGGTTGTCAGGGTAATGTGCTGCCAGACGGGGTAGTTCTTTG  400

seq1  CCACATAGATGGTGCAGTGTGAGGGCCTCTGAGCTGGCTGCTTGTCAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATAGATGGTGCAGTGTGAGGGCCTCTGAGCTGGCTGCTTGTCAGTC  450

seq1  TTCTGCACAGGAGAAAAGAAAACCATGTGTTCATGTGTAAACCAATGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCACAGGAGAAAAGAAAACCATGTGTTCATGTGTAAACCAATGAGA  500

seq1  ACACTCAACACCTAGATCATCACCCTTAGCAGTTAGGAAATATGTGCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCAACACCTAGATCATCACCCTTAGCAGTTAGGAAATATGTGCACA  550

seq1  GACCCTTGGCACTTAGAACGCACACACTTCAGACCTTCAACTGTTAGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTTGGCACTTAGAACGCACACACTTCAGACCTTCAACTGTTAGAAC  600

seq1  ATACATTTTTCAGACCTTTAACAGAGCATACACGCTCCAGACCTTTAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTTTTCAGACCTTTAACAGAGCATACACGCTCCAGACCTTTAACT  650

seq1  ATTAGAACATACATGTTTCAGATC-TTTAACAGAATATACATGCTTCAGA  699
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATTAGAACATACATGTTTCAGATCTTTTAACAGAATATACATGCTTCAGA  700

seq1  CCTTTAACTGTTAGAACATACATGTTTCAGGCCTTTAACAGTTAGAACAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAACTGTTAGAACATACATGTTTCAGGCCTTTAACAGTTAGAACAT  750

seq1  ACGCACTTCAGACTTTTAACTGTTAGAACATACGTGCTCCACACCATACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCACTTCAGACTTTTAACTGTTAGAACATACGTGCTCCACACCATACA  800

seq1  TGCTCCAGACCTTTAAG-TTAGAACATAGATGCTTCAGAGCTGTATCCAT  848
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGCTCCAGACCTTTAAGTTTAGAACATAGATGCTTCAGAGCTGTATCCAT  850

seq1  GGTGCACACAGCACTGCCCATTTTAATCACTTAGTGTTCATGAGTTTGTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCACACAGCACTGCCCATTTTAATCACTTAGTGTTCATGAGTTTGTA  900

seq1  TCTGACTGCCCATGATAAGGAATGATCTCTATAAAAAACTGCTTAAAGGA  948
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  TCTGACTGCCCATGATAAGGAATGATCTCTAATAAAAACTGCTTAAAGGA  950

seq1  TGACATCACCTTCCCTTTAGCTGGCATCATGTAATTCTTGAG-CCGTAAT  997
      |||||||||||||||||||||||||||||||| |||| |||| |||||||
seq2  TGACATCACCTTCCCTTTAGCTGGCATCATGT-ATTC-TGAGCCCGTAAT  998

seq1  -CTAAGGTCATGTGCTACTTCCATGAG-ATACTGTGAGGAAC-GGATCAA  1044
       | |||||||||||||||||||||||| |||||||||||||| |||||||
seq2  CCAAAGGTCATGTGCTACTTCCATGAGAATACTGTGAGGAACGGGATCAA  1048

seq1  GGA-CTCA-TCCACGGGACCTGCCACAGGCCATGAGGCATGCATGATTGA  1092
      ||| |||| |||||| ||||||||||||| ||||||||||||   |||||
seq2  GGACCTCATTCCACGAGACCTGCCACAGGTCATGAGGCATGCTGAATTGA  1098

seq1  ATCAGGCTTC-AAAAAAAAAAAAAAGTTGAGATTAAACAACACTTGCTTT  1141
      || ||||||| |||||||||||||| || | || ||||||| ||||||||
seq2  ATTAGGCTTCAAAAAAAAAAAAAAATTTAAAATAAAACAAC-CTTGCTTT  1147

seq1  CCAGGCCTTGCTTACAGTTTCACACCACA  1170
       ||||||||||||||||||||   |||||
seq2  TCAGGCCTTGCTTACAGTTTC---CCACA  1173

seq1: chr18_42528423_42529199
seq2: B6Ng01-113H13.g_70_849 (reverse)

seq1  TATACACGGAACCCCAATCTT-CCCTGGTGTCTTCATCTCTGTTGTTCTG  49
      || |||||||||||||||||| |||||||||||||||||||| |||||||
seq2  TAAACACGGAACCCCAATCTTCCCCTGGTGTCTTCATCTCTG-TGTTCTG  49

seq1  ACCCCTATCTTGCTGCTCCGTCAAGTCAGGGAA--GTTCTCTCTACCTCA  97
      |||||||||||||||||||||||||||||||||   ||||||||||||||
seq2  ACCCCTATCTTGCTGCTCCGTCAAGTCAGGGAAAGTTTCTCTCTACCTCA  99

seq1  ATTATC-TTCCTTACACACCCTTCAGATAGCGGCCCTTGCATTCCTTCCT  146
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTTTCCTTACACACCCTTCAGATAGCGGCCCTTGCATTCCTTCCT  149

seq1  TGGGAGAGCTTTCCTTGACCCTTAAATTGGATTCTTTCTCTGTTCTGAGA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGAGCTTTCCTTGACCCTTAAATTGGATTCTTTCTCTGTTCTGAGA  199

seq1  CACCAGCCTGAGACCAACATTTTTATATACTGTTATCAAAGTCCCAAGCA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCCTGAGACCAACATTTTTATATACTGTTATCAAAGTCCCAAGCA  249

seq1  CGACAGGGCATGATCATGTCACAAACTGTCACGCTGATAAATTGTTGGCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAGGGCATGATCATGTCACAAACTGTCACGCTGATAAATTGTTGGCT  299

seq1  CTGTTTCCGAGTTTTATGGCCACCCTGTTGGTTAAAAATTAACAGAAATG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCCGAGTTTTATGGCCACCCTGTTGGTTAAAAATTAACAGAAATG  349

seq1  AGATAACTATGAAATTATTGACAAGTGTTCGTATGTGATAACGTTTTGTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACTATGAAATTATTGACAAGTGTTCGTATGTGATAACGTTTTGTG  399

seq1  ACTTTCTCGAAGAACTTTTAATTCTGGAGAGATGCATTCTGATACAATTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTCGAAGAACTTTTAATTCTGGAGAGATGCATTCTGATACAATTA  449

seq1  TGGAAGTGGTCTAGTGGGTATTTGCTTTGGAATAACACAGGAGGGATGGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTGGTCTAGTGGGTATTTGCTTTGGAATAACACAGGAGGGATGGA  499

seq1  GAGATGACTCAGCAGTGAAGATCACTCACTGGTGCAAAGCGACTGCCTTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGACTCAGCAGTGAAGATCACTCACTGGTGCAAAGCGACTGCCTTC  549

seq1  AACTCCACTCCAGAAGATCTGTTGCCCTCTTGTGGCCTCTTCAGGCACTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCACTCCAGAAGATCTGTTGCCCTCTTGTGGCCTCTTCAGGCACTG  599

seq1  CATGCACACGGTGCACAGGCAAAACACCCATGCACATAAAATAACAAACA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACACGGTGCACAGGCAAAACACCCATGCACATAAAATAACAAACA  649

seq1  AAATACCATGAGAGAGCTCTTGGGTCTCACTGGCCAGAACTGCTACTGTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCATGAGAGAGCTCTTGGGTCTCACTGGCCAGAACTGCTACTGTG  699

seq1  TTCTGCATGCAATGGGAATACCTGATACTGGGCACATGAGGTTCATTGCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCATGCAATGGGAATACCTGATACTGGGCACATGAGGTTCATTGCT  749

seq1  CTCTGTCAACTTCCGAGTGTGTTTGGAATTC  777
      |||||||||||||||||||||||||||||||
seq2  CTCTGTCAACTTCCGAGTGTGTTTGGAATTC  780