BAC Information

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BAC

Clone NameB6Ng01-114E23
Chromosome18 (Build37)
Map Location 62,521,505 - 62,669,982
singlet/doubletdoublet
Overlap geneHtr4, Fbxo38
Upstream genePpargc1b, LOC667675, 4933429F08Rik, Csnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3, Sh3tc2, Adrb2
Downstream geneSpink10, EG408198, 2700046A07Rik, Apcdd1, Napg, 9430028L06Rik, 9030411M15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114E23.bB6Ng01-114E23.g
ACCDH919861DH919862
length8961,014
definitionDH919861|Mus musculus domesticus DNA, BAC clone: B6Ng01-114E23, 5' end.DH919862|Mus musculus domesticus DNA, BAC clone: B6Ng01-114E23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,521,505 - 62,522,357)(62,669,065 - 62,669,982)
sequence
gaattccttaaaatgaggtgaatttatcccttgcctatctcctgattggg
gccttctcaccggtgttgtgatctctttcttctttacgttaaaccgaccc
atttaaatcttattcttgttaccccactcttctttcatgtgggacctgtt
tctttcatgtggggccagaaggaaagaatgctgagtaataacgtccatac
cctaaactgagatggaaaaatccttttgattgaagaacatggagctcaaa
ggctaaaggaagatacttgtccctttgattgcccatttgatttgctctgc
aaaaagaaagaccctttgctttggggctcctgtgtttgcggtggaaaaca
ctggatccagtcttcggggtaaaatattctttgtgcctgtcaccttcata
ggaatgtgacaaatatagaatatggttgacctaccagggatcacattatt
atagagaaaactctctctgcctctccaaggaactatcaaatgctaatagc
tcccctgtaagggataggcttacatgtctacttttacttaccccccccat
gatggaattttgttggaagtctattttgtcagatattagaatagatatgc
ctgcttgcttctagtttcattgcttgtaatacctcttttcagcctttagc
ctaaaatagtgtctatcattgatggtgaggtgtgtttcttggagacagca
taaagatggatcctgtttattactcctgtcagttgctctgtgtgtttttt
tattagagtatttgcaaactattaattttgagctattgttgaaatttgtt
tttaaatttctattatttggttgtggtggtattgtttcttttatctcttt
tttgttaactgttctggaagtaaatgttcctttttctcttgggtat
gaattctagattcccatggcagggaaccttttcttgcgaaggttttgtgc
tgtctactatgggggagtcgtgactccatttcaacggaaatgaacgagac
tgagggtccccctgctggagcttggtccttttgtaggcagacaaactgcc
ccataacgaggaggagacacctctctccttgagaggtggagaaccactat
acctcgtcttgtttctgggctgggatacgtaaaggtgcggaaaaagacta
cctgggcacgatgagcattgctgttctgctcctgatcatgcgctggaaaa
atgatgatggcctgccccctggtgggggatacccatacattcccggggcc
caagcacctttgtttattccgtccatgatgttacgtttaatacactcctg
caaaccttccctgtccttctttacaggtctgtctcaaatataggctgttc
tggttgagattttaaagtttgaggtgtttattatatccatttataatgag
ttctttaatttaaaattaaaatttttatatccctattttaaaaaaaaata
atctaggctggggttgtggcatacacctttgatccaaataaccaggaggc
aaaattaggcagtactcttgagttttgaagcctgcctggtctacacagcg
agttccaggccagccgaggctacacagggaggtcatgcatcatgtgttta
aaaaaaaaaaaaaatcaagatctgccatcttcccttccttaagacagatt
acatgttgtgtgttcatttttcttaagtacgtagaatattacataatttt
ggttacatcatatggcatttggcatttgtttttgttaaaggcagtggttg
tgtatgtgtgtgtatacacaacatggcacagggtgtgatcactggaaaca
ccttatacaccaggcatgactcccactgtaatggtagcacttataaggct
gaagcaggaggattgttgtgaacccatgtcagctgggcccaaaccaaacc
ttttttccagggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_62521505_62522357
seq2: B6Ng01-114E23.b_83_937

seq1  CTGATTTTTGCCTTCTCACATAATTTTGTGATCTCTTTCTTCTTTACTTT  50
      ||||||   ||||||||||    | |||||||||||||||||||||| ||
seq2  CTGATTGGGGCCTTCTCAC-CGGTGTTGTGATCTCTTTCTTCTTTACGTT  49

seq1  AAACCCAACAATTTAAATCTTATTCATGTTACCCAACTCTTCTTTCATGT  100
      ||||| | | ||||||||||||||| |||||||| |||||||||||||||
seq2  AAACCGACCCATTTAAATCTTATTCTTGTTACCCCACTCTTCTTTCATGT  99

seq1  GGGACCTGTTTCTTTCATGTGGGGCCAGAGGGAAAGAATGCTGAGTAATA  150
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGGACCTGTTTCTTTCATGTGGGGCCAGAAGGAAAGAATGCTGAGTAATA  149

seq1  AGGTCCATACACTAAACTGAGATGGAGAAGAAAAGAGTGATTGAAGAACA  200
      | |||||||| ||||||||||||||| || |      |||||||||||||
seq2  ACGTCCATACCCTAAACTGAGATGGA-AAAATCCTTTTGATTGAAGAACA  198

seq1  TGGAGCTCACAGGCTAAAGGAAGAGACAGGCAGCTTTGATTGCCCAGTTG  250
      ||||||||| |||||||||||||| ||  |   ||||||||||||| |||
seq2  TGGAGCTCAAAGGCTAAAGGAAGATACTTGTCCCTTTGATTGCCCATTTG  248

seq1  ATTTGCTCTGGAAAATGAAAGACCCTTTGCTTTGGGGCTCCTGTGTTTGC  300
      |||||||||| |||| ||||||||||||||||||||||||||||||||||
seq2  ATTTGCTCTGCAAAAAGAAAGACCCTTTGCTTTGGGGCTCCTGTGTTTGC  298

seq1  GGTGGAAAACACTGTATCCAGGCTTCAGTGTTTAATATTCTTTGTGCCTG  350
      |||||||||||||| |||||| |||| | ||  |||||||||||||||||
seq2  GGTGGAAAACACTGGATCCAGTCTTCGGGGTAAAATATTCTTTGTGCCTG  348

seq1  TCACCTTCTTAAGAATGTGACAAATATAGAGTATGGTTGACCTACCAGGG  400
      |||||||| || |||||||||||||||||| |||||||||||||||||||
seq2  TCACCTTCATAGGAATGTGACAAATATAGAATATGGTTGACCTACCAGGG  398

seq1  ATCACATTATTATAGAGAAAACTCTCTCTGCCTCTCCAAGGAACTATCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATTATTATAGAGAAAACTCTCTCTGCCTCTCCAAGGAACTATCAA  448

seq1  ATGCTAATAGCTCCCCTGTAAGGGATAGGCTTACATGTCTACTTTTACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAATAGCTCCCCTGTAAGGGATAGGCTTACATGTCTACTTTTACTT  498

seq1  ACCCCCCCCATGATGGAATTTTGTTGGAAGTCTATTTTGTCAGATATTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCCCCATGATGGAATTTTGTTGGAAGTCTATTTTGTCAGATATTAG  548

seq1  AATAGATATGCCTGCTTGCTTCTAGTTTCATTGCTTGTAATACCTCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATATGCCTGCTTGCTTCTAGTTTCATTGCTTGTAATACCTCTTTT  598

seq1  CAGCCTTTAGCCTAAAATAGTGTCTATCATTGATGGTGAGGTGTGTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTTAGCCTAAAATAGTGTCTATCATTGATGGTGAGGTGTGTTTCT  648

seq1  TGGAGACAGCATAAAGATGGATCCTGTTTATTACTCCTGTCAGTTGCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACAGCATAAAGATGGATCCTGTTTATTACTCCTGTCAGTTGCTCT  698

seq1  GTGTG-TTTTTTATTAGAGTA-TTGC-AACTATTAATTTTGAGCTATTGT  747
      ||||| ||||||||||||||| |||| |||||||||||||||||||||||
seq2  GTGTGTTTTTTTATTAGAGTATTTGCAAACTATTAATTTTGAGCTATTGT  748

seq1  TGAAATTTGTTTTTAAATTTCTATTATTTGGTTGTGGTGGTATTGTTTCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTTGTTTTTAAATTTCTATTATTTGGTTGTGGTGGTATTGTTTCT  798

seq1  TTTATCTC-TTTTTGTTAACTGTTCTGGGAGTAAATGTTCCTTTTTCTCT  846
      |||||||| ||||||||||||||||||| |||||||||||||||||||||
seq2  TTTATCTCTTTTTTGTTAACTGTTCTGGAAGTAAATGTTCCTTTTTCTCT  848

seq1  TGGGTAT  853
      |||||||
seq2  TGGGTAT  855

seq1: chr18_62669065_62669982
seq2: B6Ng01-114E23.g_165_1078 (reverse)

seq1  TTCCCTGAGAAAAAGGTTTTGCTCTGTGGCCCAGGCTGACACTGGGTTCA  50
      ||||||| |||||| | |||| | || |||||| ||||||| ||||||||
seq2  TTCCCTG-GAAAAAAGGTTTGGTTTG-GGCCCA-GCTGACA-TGGGTTCA  46

seq1  CAGCAATCCTCCTGCTTCAGCCTCTTAAGTGCTAACATTACAGGTGTGAG  100
      || ||||||||||||||||||||  ||||||||| ||||||| ||| |||
seq2  CAACAATCCTCCTGCTTCAGCCTTATAAGTGCTACCATTACA-GTGGGAG  95

seq1  TCATGCCTGGTTGTATAAGGTGTTTTCCAGTGATCACACCCTGTGCCATG  150
      |||||||||| ||||||||||| |||||||||||||||||||||||||||
seq2  TCATGCCTGG-TGTATAAGGTG-TTTCCAGTGATCACACCCTGTGCCATG  143

seq1  TTGTGTATACACACACATACACAACCACTGCCTTTAACAAAAACAAATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTATACACACACATACACAACCACTGCCTTTAACAAAAACAAATGC  193

seq1  CAAATGCCATATGATGTAACCAAAATTATGTAATATTCTACGTACTTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCCATATGATGTAACCAAAATTATGTAATATTCTACGTACTTAAG  243

seq1  -AAAATGAACACACAACATGTAATCTGTC-TAAGGAAGGGAAGATGGCAG  298
       |||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAAAATGAACACACAACATGTAATCTGTCTTAAGGAAGGGAAGATGGCAG  293

seq1  ATCTTGATTTTTTTTTTTTTTTAAACACATGATGCATGACCTCCCTGTGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGATTTTTTTTTTTTTTTAAACACATGATGCATGACCTCCCTGTGT  343

seq1  AGCCTCGGCTGGCCTGGAACTCGCTGTGTAGACCAGGCAGGCTTC-AAAC  397
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGCCTCGGCTGGCCTGGAACTCGCTGTGTAGACCAGGCAGGCTTCAAAAC  393

seq1  TCAAGAGTACTGCCTAATTTTGCCTCCTGGTTATTTGGATCAAAGGTGTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGTACTGCCTAATTTTGCCTCCTGGTTATTTGGATCAAAGGTGTA  443

seq1  TGCCACAACCCCAGCCTAGATTATTTTTTTTTAAAATAGGGATATAAAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACAACCCCAGCCTAGATTATTTTTTTTTAAAATAGGGATATAAAAA  493

seq1  TTTTAATTTTAAATTAAAGAACTCATTATAAATGGATATAATAAACACCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTTTAAATTAAAGAACTCATTATAAATGGATATAATAAACACCT  543

seq1  CAAACTTTAAAATCTCAACCAGAACAGCCTATATTTGAGACAGACCTGTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTTAAAATCTCAACCAGAACAGCCTATATTTGAGACAGACCTGTA  593

seq1  AAGAAGGACAGGGAAGGTTTGCAGGAGTGTATTAAATGAAAAGATATGGT  647
      |||||||||||||||||||||||||||||||||||| | ||    |||| 
seq2  AAGAAGGACAGGGAAGGTTTGCAGGAGTGTATTAAACGTAACATCATGGA  643

seq1  AGAAACAGAACTGTGTGCACGGGCCCGGAGAGTGGACTGGGAGCAGCAAC  697
       | || | |     ||||  |||||| | || || |  || | |  | ||
seq2  CGGAATAAACAAAGGTGCTTGGGCCCCGGGAATGTATGGGTATCCCCCAC  693

seq1  ACGGAGCCAGGAACTAAGGATTTTTCCAGCACATTACCAAGCACAGAGCA  747
        || | ||||   | |  ||||||||||| ||| | || |  |||| ||
seq2  CAGGGGGCAGGCCATCATCATTTTTCCAGCGCATGATCAGGAGCAGAACA  743

seq1  GCAAAGCACCGGGGGCCCAGCTACTCTCTCCCCGCACCTTTAC--ACCCC  795
      |||| || |   | |||||| || ||| |  ||||||||||||  | |||
seq2  GCAATGCTCATCGTGCCCAGGTAGTCTTTTTCCGCACCTTTACGTATCCC  793

seq1  TTTGCCCAGAGCCAAGCTGAGGTATAGCTGACTTCAGCCTCTCATGCCAT  845
         |||||||  ||||  |||||||||  |   ||  ||||||| |    
seq2  --AGCCCAGAAACAAGACGAGGTATAGTGGTTCTCCACCTCTCAAGGAGA  841

seq1  GAAGCTGCTCCTCCACGCTACGGGGCAGTTAACTTGCATACAAAAGGACC  895
      || |   ||||||| || || |||||||||    ||| ||||||||||||
seq2  GAGGTGTCTCCTCCTCGTTATGGGGCAGTTTGTCTGCCTACAAAAGGACC  891

seq1  AAGCTCCAGCAGGGGGACCCTCA  918
      |||||||||||||||||||||||
seq2  AAGCTCCAGCAGGGGGACCCTCA  914