BAC Information

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BAC

Clone NameB6Ng01-115C19
Chromosome18 (Build37)
Map Location 27,279,841 - 27,280,921
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665977
Downstream geneEG665646
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115C19.bB6Ng01-115C19.g
ACCDH920508DH920509
length1,1901,079
definitionDH920508|Mus musculus domesticus DNA, BAC clone: B6Ng01-115C19, 5' end.DH920509|Mus musculus domesticus DNA, BAC clone: B6Ng01-115C19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaagaaggttaacaagctgaagggtcaaagtgaggatagctcaat
cccacttgggagggagaagaaagcaatcatgatggggttgggggtggagc
tggaggcagagtgaggcagggacctgggtggaaaaggggacagggtaggg
aagagggaaacatgatcaggtatttgaggggaagaggactaaagccctga
gggccggcagaagaatggaaatgcgcaaccttgagaggtaaaagttgggg
ggaccctccacaatgagatttccaggactcaaagacagggaccttacatg
caataccctatagtgggaagagggaacttgtagagcccacctcctataga
aagacaggatatcaattggtgaaatggggttgccatcccacagtcaaaaa
ttctgacccagaattctttcttctgaaagaactgcagggacaaaaatgga
caagagcctgaggagaggaggtccagtgacaggcccagattgggatccag
atcaaggggaagctgcaaagcctgacattattaggacactatggtctgct
tacaaacagaggcttatcattactgccctccaaaaggcccaacaagcagc
tgaaaaagtcagatgcggatatttacacccaatcaacagacagaacctgg
tgactcctttgattgaattaggaaaaagctggaagaggttgaggaggatt
gcaaccttaaaggaaaaccagcagtcaactaacctggactcccgagattg
ctcagaccctgagtcaccgaccaggcagcatacaccagctgatatgaggc
ccccaacacatatagaggacttccgggtcttgactcagtaaaggatgatg
catctaactctcaagagacttgaggccctagggagtggaggtctggttgg
gtgggggtctggggtagaacatcctcttggagacacggggagtaggcatg
ggatgtggaatagtcagagggtggactatgatggggataagcctggacta
tagatatataaagatataaatgtctgctctgtataagtaattatttttct
aaagactcattttataagaaagcacagatgccagttaactctagtattaa
gtaaccttaaggacctttctcagggctatattatagaaattgagtttagt
accatctggtggtccaagtgaacgtcttgtcagcagtatg
gaattcaactgtgttaatggttttaatttcagagagaggaagaggggaaa
gtactgaaagggagacaagagagcgggagaaatggagagagagaagagtc
agaagatgtagagagagagagactaagtaagaaagagagattcagagtga
gacagggagacagagaaagacgaaggcagagatagaatgtaaactggtgt
cttgaatctgaccctgaggtttcaaggaaccctgttaagaaatattcaaa
ctgagaatccaggagttgaaaacattactgaccaccaacattgctttatt
gaatgcaagctttaaatgttcttgtaattcattccattgtaaacatacat
atcttcctctttcagataacccagaaattgatagaagaaactctcaagac
ttaagatggtttatgagttataattaaagtaagccaagaacaaaagtcat
gtgaatttaactatgtaaatgtctctaattcctcagtatcaagactggaa
aaattgctaattctaagctgtggttggaagttcagtgaaataataacgag
agaatccattcaaattaactttttaaaaattaatattttacttatttacc
tccatctgttgtcttctccccaaccctctcccatagttcctcattccatt
ccttctcctccttgcctccaagagggcgcatccccacacacaccaaacat
cccccttccctggggcctcaagtctcttaacaattactatatcattttcc
acggaggccagaccaagcagttatctgctatatatgtgccagggacctca
atgcatgacagcccatgcatgctgtctggttggtggctcaccctctggaa
tcccccaggggtctgggttagttgagactgctggccatcatatgggataa
ccctcacattaagctccttcaatcctccccctaatttctccataggggtc
cctgactaagtttaatggttgggtgtaagtatttgcatctgtctcagtct
gctgctcataaaactcctcagactcactcatgctagctcctgtctgtacg
caatatcataccatcagtaatagtgtcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_27279841_27280921
seq2: B6Ng01-115C19.g_68_1146

seq1  GAATTCAACTGTGTTAATGGTTTTAATTTCAGAGAGAGGAAGAGGGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTGTGTTAATGGTTTTAATTTCAGAGAGAGGAAGAGGGGAAA  50

seq1  GTACTGAAAGGGAGACAAGAGAGCGGGAGAAATGGAGAGAGAGAAGAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGAAAGGGAGACAAGAGAGCGGGAGAAATGGAGAGAGAGAAGAGTC  100

seq1  AGAAGATGTAGAGAGAGAGAGACTAAGTAAGAAAGAGAGATTCAGAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATGTAGAGAGAGAGAGACTAAGTAAGAAAGAGAGATTCAGAGTGA  150

seq1  GACAGGGAGACAGAGAAAGACGAAGGCAGAGATAGAATGTAAACTGGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGAGACAGAGAAAGACGAAGGCAGAGATAGAATGTAAACTGGTGT  200

seq1  CTTGAATCTGACCCTGAGGTTTCAAGGAACCCTGTTAAGAAATATTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATCTGACCCTGAGGTTTCAAGGAACCCTGTTAAGAAATATTCAAA  250

seq1  CTGAGAATCCAGGAGTTGAAAACATTACTGACCACCAACATTGCTTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAATCCAGGAGTTGAAAACATTACTGACCACCAACATTGCTTTATT  300

seq1  GAATGCAAGCTTTAAATGTTCTTGTAATTCATTCCATTGTAAACATACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCAAGCTTTAAATGTTCTTGTAATTCATTCCATTGTAAACATACAT  350

seq1  ATCTTCCTCTTTCAGATAACCCAGAAATTGATAGAAGAAACTCTCAAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCTCTTTCAGATAACCCAGAAATTGATAGAAGAAACTCTCAAGAC  400

seq1  TTAAGATGGTTTATGAGTTATAATTAAAGTAAGCCAAGAACAAAAGTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATGGTTTATGAGTTATAATTAAAGTAAGCCAAGAACAAAAGTCAT  450

seq1  GTGAATTTAACTATGTAAATGTCTCTAATTCCTCAGTATCAAGACTGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTTAACTATGTAAATGTCTCTAATTCCTCAGTATCAAGACTGGAA  500

seq1  AAATTGCTAATTCTAAGCTGTGGTTGGAAGTTCAGTGAAATAATAACGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGCTAATTCTAAGCTGTGGTTGGAAGTTCAGTGAAATAATAACGAG  550

seq1  AGAATCCATTCAAATTAACTTTTTAAAAATTAATATTTTACTTATTTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCATTCAAATTAACTTTTTAAAAATTAATATTTTACTTATTTACC  600

seq1  TCCATCTGTTGTCTTCTCCCCAACCCTCTCCCATAGTTCCTCATTCCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTGTTGTCTTCTCCCCAACCCTCTCCCATAGTTCCTCATTCCATT  650

seq1  CCTTCTCCTCCTTGCCTCCAAGAGGGCGCATCCCCACACACACCAAACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCCTCCTTGCCTCCAAGAGGGCGCATCCCCACACACACCAAACAT  700

seq1  CCCCCTTCCCTGGGGCCTCAAGTCTCTTAACAATTACTATATCATTTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTTCCCTGGGGCCTCAAGTCTCTTAACAATTACTATATCATTTTCC  750

seq1  ACGGAGGCCAGACCAAGCAGTTATCTGCTATATATGTGCCAGGGACCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAGGCCAGACCAAGCAGTTATCTGCTATATATGTGCCAGGGACCTCA  800

seq1  ATGCATGACAGCCCATGCATGCTGTCTGGTTGGTGGCTCACCCTCTGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGACAGCCCATGCATGCTGTCTGGTTGGTGGCTCACCCTCTGGAA  850

seq1  TCCCCCAGGGGTCTGGGTTAGTTGAGACTGCTGGCCATCATATGGGATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCAGGGGTCTGGGTTAGTTGAGACTGCTGGCCATCATATGGGATAA  900

seq1  CCCTCACATTAAGCTCCTTCAATCCTCCCCCTAATTTCTCCATAGGGGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACATTAAGCTCCTTCAATCCTCCCCCTAATTTCTCCATAGGGGTC  950

seq1  CCTGACTTAAGTTTAATGGTTGGGTGTAAGTATTTGCATCTGTCTCAGTC  1000
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAC-TAAGTTTAATGGTTGGGTGTAAGTATTTGCATCTGTCTCAGTC  999

seq1  TGCTGCTCATAAGAACT-CTCAGAACTCACTCATGCTAGGCTCCTGTCTG  1049
      |||||||||||| |||| ||||| |||||||||||||| |||||||||||
seq2  TGCTGCTCATAA-AACTCCTCAG-ACTCACTCATGCTA-GCTCCTGTCTG  1046

seq1  TACGC-ATATCATACCATCAGTAATAGTGTCAG  1081
      ||||| |||||||||||||||||||||||||||
seq2  TACGCAATATCATACCATCAGTAATAGTGTCAG  1079