MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-116C21
Chromosome	18 (Build37)
Map Location	72,838,295 - 72,839,382
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Dcc, LOC629684
Downstream gene	LOC100043411, LOC100042955, Rkhd2, Smad4
Link	Open Mouse BAC browser

Click to get alignment info.

name	Dcc (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13176 MGI:94869
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC629684 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:629684
definition	note : proteasome (prosome, macropain) subunit, beta type 3 pseudogene pseudo : _no_value

name	LOC100043411 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043411
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC100042955 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042955
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Rkhd2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:240396 MGI:2652843
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Smad4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17128 MGI:894293
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dcc (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133778956 GeneID:13176 MGI:94869
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : deleted in colorectal carcinoma transcript_id : NM_007831.3

name	LOC100043411 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149269866 GeneID:100043411
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100043411 transcript_id : XM_001480353.1

name	Rkhd2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116174796 GeneID:240396 MGI:2652843
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ring finger and KH domain containing 2 transcript_id : NM_001039214.3

name	Smad4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31543223 GeneID:17128 MGI:894293
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : MAD homolog 4 (Drosophila) transcript_id : NM_008540.2

name	Dcc (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117168295 CCDS:CCDS29336.1 GeneID:13176 MGI:94869
definition	GO_component : GO:0030424 - axon [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0007049 - cell cycle [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0045786 - negative regulation of progression through cell cycle [Evidence IEA]; GO:0001764 - neuron migration [Evidence IMP] codon_start : 1 product : deleted in colorectal carcinoma protein_id : NP_031857.2

name	LOC100043411 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149269867 GeneID:100043411
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480403.1

name	Rkhd2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:115430061 GeneID:240396 MGI:2652843
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : ring finger and KH domain containing 2 protein_id : NP_001034303.2

name	Smad4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543224 CCDS:CCDS29337.1 GeneID:17128 MGI:894293
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA]; GO:0005667 - transcription factor complex [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003700 - transcription factor activity [Evidence IDA]; GO:0016563 - transcriptional activator activity [Evidence IDA] GO_process : GO:0009952 - anterior/posterior pattern formation [Evidence IMP]; GO:0007182 - common-partner SMAD protein phosphorylation [Evidence IEA]; GO:0010003 - gastrulation (sensu Mammalia) [Evidence IMP]; GO:0001822 - kidney development [Evidence IMP]; GO:0008285 - negative regulation of cell proliferation [Evidence IGI]; GO:0009887 - organ morphogenesis [Evidence IEA]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045893 - positive regulation of transcription, DNA-dependent [Evidence IDA]; GO:0051098 - regulation of binding [Evidence IDA]; GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0007184 - SMAD protein nuclear translocation [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0001658 - ureteric bud branching [Evidence IGI] codon_start : 1 note : Smad 4 product : MAD homolog 4 protein_id : NP_032566.2

name	LOC100042955 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042955
definition	number : 1 pseudo : _no_value

name	LOC100042955 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042955
definition	number : 2 pseudo : _no_value

clone name	MSMg01-096G02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-076I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-129K15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-215M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349B16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-272A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-270J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-460D06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-097B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-499K03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-260H22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-492O06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-465P20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-349N14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-194K15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-411C21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-548H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-481D23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-304P12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362N14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-351E02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482F21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-110N14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-276J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-072B09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-535N04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-201F15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-201G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-481C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-447J06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-342A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-335J10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355K13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-312B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-183P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-528G08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-204F12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-055D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-299A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-338L12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-064C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-208J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-073E03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-410J04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-109K13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-292J02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-279M04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-114J10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-519H18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-174J06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-428K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-122J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355D09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-079P22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-075P03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-472C11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-546H19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-188C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-261D06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-095B23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467J03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-304G07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544J18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-499D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-154A08
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-094P06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-151D05
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-311C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509H15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-206I12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-321B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-454F12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-088K23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-311N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-181N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-428J03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-149G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-445N16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-397K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-144B21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-118N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-093K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-517N07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-426I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-391N04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-523B15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-101A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-178L12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-160G01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-089O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-145A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099N20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-253B22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-100H04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-257G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215F14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-187I01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-305N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101L13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125E12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-285G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134G02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-076I05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-171L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314C22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110D09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-114M05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019P06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-024K14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-266L12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-187C05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-046A01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061L22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-116C21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-350O11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-174K24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-094G16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-039E15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-045K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011K02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-319I03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-305P11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-120G01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-248I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275H20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-295M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248P19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-126N23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-317L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047D01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-326G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179F01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-131O04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137C21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-324D07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-076M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241J04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-156J20
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-116C21.b	B6Ng01-116C21.g
ACC	DH921241	DH921242
length	1,224	1,102
definition	DH921241\|Mus musculus domesticus DNA, BAC clone: B6Ng01-116C21, 5' end.	DH921242\|Mus musculus domesticus DNA, BAC clone: B6Ng01-116C21, 3' end.
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	gaattcaaccaaactttcaaagaagagctaaaatcaatactcaaactatt ccataaaatagaaatagaaggaactattccataaaatagaaacagaagga acactgccaaactcattgtatgaaaccatagtatccctgataacaaaacc acacaaaaactcatcaaagaaagagtattacagacaaatttttcttacga accttaatggaaaatacttaactaagtactcacatattgaatccaggaac acatccaaaacttcatccaccctgatcaagtaggattcatccaagtgatg tagggatggctcaatatatgaaatccatcaatgtaatccaccatataaac aaactgaaaaaaatcacatgatcatcttattagatgctgaaaaagtcttt gacaaaatccaacacccctttgtgctaaaagtcttagagagattagggat acaagtcacatacccaaacattataaaagtaatatgcaacaagtccgtag ctaacatcaaattaaatggggagaaacttaaagcaattccaataaaatca ggagcaagtcatggcagcccactctctatctattcaatatagtacttgaa cttctagccataacaataagacaatgaaaggagatgaaggggatacaaag tagtcaaagtattgatatctgtcaaagtgaccccaaaattctatcaaaga actcctacagctgataaatatcttcagaaaagtggctgaatacagaataa actaaaaaaaaaaaatctatagccctccattatacaaaacataaatgaac tgagaaggaaattatagaagaaacactcttttataatagtcacagataat ataaaatatctttgtataactctaatcaagcaagtgaaagacctgtatgg caagaacttcaagtcactgaagaaagagattgaaggacatatcagaagat ggagatatctcctatgctcatggatcatgagattaacatagtgaaactgg ccatcttactagagcaaattacagattcatacattcccatcaattctaat atgacttttacagacagagtattctcactcaataggaaaccataaagccc aggatagctaccatctgtacaaataaaattctagagtaccatctgacttc agctgattacagattagattaaactattgccatgtataggagatgacagt tgtatcatggaaccaatgtgagac	gaattcatgcctagtattgtaaatcttacctaaagatttgtgagttcaca ttccttgtgagagaaattacagccattgttcttactctttatggatatga tgataaactgtcttctttttatatatgtttatgcctataaattagtatta ttaacagcttcggtcagagaagttattgctttaaattgggtaattgaagt ggaaatttctggtttgttgggagactcagttgtgtcatgtgatgtttggg taaaacagacaccagagagtgtgtgtgatatccaataaaaaaaaaacaat aaaaactatagttaaaaaaaaagaaaagaaagaatttaagtataacccaa cagacagtaaatgatgaccttgcattggttcaccttgcgaaactttgttg gtcttccctgatctttgcttgtcatgatttcatagagagaaaataacttc tagtggtattctagctgcttcttggtgcttccacagactcaggcagattt ggtggagccttgcagttttttctgtattaagctgctgctactgactcatg tttggtgtttaccgatgggactggacctctgctagagattactatttgaa ataaccccaaagaagtacttataaacaggtccacagcccttatttttcta tttaacctttctttttagtagatgggctagaagggaaactgaagcattta agaacccttattatacaatgtaatttatatacaatgatataatttatata gaaaagtaggtaaacaaaactagtaaagtatttttagaatacatgcatgt aactatgtttaaaataactcttttcaagcaatatgaaaataacccaaacc caccaaagattattaatttccttagtgacctattttataaaactctgcta aaacttatttgactagctagctaaaataagttagagatatacaaggattt gagaaacttatgagccattaagataaatgcattttattagtttaaaaatg aaatggcatcctggctattagaggaaaagtatagttctatttgtttagtg tcaacccctgaatgccttatcctaattctgaaatatctttgtcctcctct ga
quality values	Open. Hide. 61 47 53 39 61 38 35 55 61 47 32 61 61 61 61 61 61 40 21 61 61 61 61 59 59 61 15 24 18 12 13 12 19 22 19 18 30 44 59 59 61 59 61 61 61 61 61 61 61 59 55 59 59 61 61 61 55 59 61 59 59 61 61 61 61 61 61 55 44 35 59 43 30 35 35 35 59 52 61 61 59 61 61 61 61 61 61 61 55 59 61 61 61 59 61 55 61 59 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 55 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 39 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 53 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 53 57 57 43 43 53 57 46 45 57 52 57 53 53 53 57 53 57 57 57 53 52 53 53 57 57 57 57 47 53 53 53 53 38 57 57 53 43 57 57 57 42 35 52 53 50 57 57 57 50 53 40 53 53 47 53 57 57 50 42 40 57 52 53 39 37 57 53 57 57 53 52 41 51 52 50 47 57 45 43 27 33 18 12 47 57 41 32 53 52 48 50 53 53 28 41 46 35 51 53 35 53 53 57 39 50 53 36 47 53 52 53 31 16 34 57 57 43 50 43 53 41 52 41 23 39 52 57 57 53 27 47 52 34 31 53 53 52 27 50 38 53 30 52 52 57 38 30 57 38 39 42 28 57 57 57 57 57 57 57 57 57 57 41 44 42 35 16 18 11 8 10 17 38 35 19 34 16 47 52 37 47 31 52 40 53 57 38 40 37 48 34 57 37 33 37 40 44 40 40 53 37 22 26 40 25 57 20 20 10 10 9 18 38 29 33 29 24 24 48 46 31 30 25 40 39 30 7 46 44 31 30 29 36 37 26 29 30 25 32 21 32 30 32 26 18 29 29 25 28 29 29 45 47 36 28 29 28 29 29 46 29 31 26 29 29 30 24 28 38 32 29 28 29 27 33 31 29 28 29 27 25 27 21 18 29 51 30 21 29 26 21 28 43 18 24 28 41 36 19 33 33 23 22 30 18 11 28 29 26 12 28 29 34 14 18 26 35 28 35 23 43 51 24 28 31 22 28 31 22 35 16 14 16 26 22 24 14 14 17 25 33 28 20 29 27 10 31 16 51 18 18 6 19 15 15 28 33 34 13 43 14 21 20 31 31 30 26 16 19 23 32 16 24 30 31 26 29 13 12 15 12 18 29 6 6 5 7 10 10 20 24 25 51 30 26 25 30 16 9 19 17 16 15 9 38 25 26 18 35 27 30 19 16 21 44 33 17 27 8 7 7 9 30 11 25 28 33 17 18 24 23 9 9 9 25 13 13 22 6 23 13 17 20 13 24 21 14 5 11 16 26 29 18 29 42 42 29 5 10 5 8 16 8 14 14 30 12 19 25 9 11 8 5 3 10 6 14 7 5 4 4 9 4 4 18 31 18 5 16 5 12 8 27 23 16 7 30 19 10 9 12 7 7 6 14 22 21 17 14 15 15 9 20 4 10 6 9 5 4 4 4 5 23 18 29 10 18 13 16 11 15 6 8 13 3 2 4 4 5 5 5 2 4 16 21 5 8 6 18 7 21 4 7 4 11 17 5 5 9 6 2 1 1 3 2 2 1 3 11 22 7 15 7 7 3 3 8 7 9 6 17 8 7 4 10 5 5 7 6 4 3 6 6 12 4 5 15 4 10 16 8 13 20 8 6 2 3 3 6 4 5 3 13 14 5 9 3 2 5 7 8 3	Open. Hide. 61 61 47 40 61 13 20 10 8 9 9 19 10 10 8 34 34 41 55 52 61 61 61 61 61 61 59 59 59 61 61 61 61 61 61 59 59 61 61 59 61 61 61 61 61 61 59 59 59 16 27 22 26 21 26 37 44 43 44 44 59 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 59 55 59 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 59 59 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 59 59 59 55 44 59 61 61 61 61 59 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 59 61 59 55 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 59 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 59 61 61 61 61 61 61 59 61 61 59 59 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 59 59 59 59 59 59 59 52 43 59 59 61 61 61 61 61 61 59 59 59 59 61 61 59 61 61 61 59 59 59 61 59 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 59 59 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 59 59 61 61 61 61 61 61 61 61 61 59 61 61 55 61 61 61 55 55 55 55 55 55 52 61 61 61 61 61 61 61 61 55 61 61 55 61 61 61 61 61 55 55 61 52 52 55 55 55 55 55 55 61 55 55 52 61 61 61 61 61 61 55 61 50 55 49 50 55 43 55 55 50 43 49 61 61 61 61 61 61 61 61 47 55 61 61 43 55 55 55 55 61 61 61 61 61 55 61 14 23 14 19 19 21 55 61 55 27 43 19 18 14 35 61 36 61 61 61 53 52 47 50 50 50 37 61 61 50 47 53 53 61 53 52 39 50 50 53 50 29 23 15 11 10 27 52 47 43 47 50 50 50 50 61 61 50 53 61 50 50 31 29 33 32 38 31 33 31 45 53 39 47 47 16 14 10 12 10 16 12 33 16 23 24 38 31 33 47 42 38 39 28 42 38 38 43 47 43 52 47 39 23 57 57 57 19 37 39 29 12 57 17 47 47 47 38 39 42 47 29 14 46 57 57 10 23 43 50 53 42 53 23 53 47 24 32 47 22 26 53 45 26 53 32 42 21 20 42 42 47 37 23 33 53 24 27 40 45 29 45 32 47 28 30 26 26 23 27 13 13 18 27 45 23 47 34 32 47 53 35 31 43 52 45 33 30 22 12 13 8 21 14 26 17 57 24 27 24 24 12 26 28 53 40 30 42 30 36 22 18 21 35 43 14 47 30 30 11 27 11 9 16 19 42 17 38 30 33 36 40 36 37 28 21 57 24 20 19 31 32 37 57 57 18 16 29 30 30 28 32 36 23 34 37 12 9 12 19 10 10 24 19 16 14 13 19 15 31 23 52 57 57 52 35 47 21 17 5 15 20 24 36 15 18 32 12 30 28 30 20 14 18 27 47 35 53 31 33 14 20 17 30 36 33 28 34 14 7 36 26 8 25 29 27 21 31 23 35 28 29 17 20 9 16 18 18 27 23 22 22 20 14 30 24 18 30 22 22 14 29 21 14 33 51 28 32 29 13 45 29 30 29 30 15 25 17 14 11 9 12 12 17 12 16 13 8 15 10 8 11 15 14 28 27 19 13 7 16 29 28 24 30 45 47 21 20 20 22 7 18 40 27 15 36 21 29 12 10 29 15 23 29 25 12 11 9 8 19 12 18 22 15 28 46 20 20 29 29 18 26 24 30 12 29 33 23 30 33 22 19 15 29 10 5 13 7 6 5 5 7 29 46 43 11 8 9 6 7 11 7 24 21 9 28 29 39 19 22 23 25 41 22 8 19 20 9 12 27 27 16 14 9 13 10 6 7 10 8 6 8 20 5 5 19 32 30 13 27 11 5 21 16 11 22 28 30 22 23 27 51 38 14 17 9 6 7 5 32 9 8 12 10 18 31 38 51 26 12 20 15 24 9 10 7 25 14 34 7 6 5 6 22 8 5 5 10 5 5 12 12 18 11 6 6 28 10 7 28 14 6 5 8 6 5 12 4 7 11 6 10 5

Alignment Information

BAC End 1

BAC End 2

seq1: chr18_72838295_72839382
seq2: B6Ng01-116C21.g_69_1170

seq1  GAATTCATGCCTAGTATTGTAAATCTTACCTAAAGATTTGTGAGTTCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCCTAGTATTGTAAATCTTACCTAAAGATTTGTGAGTTCACA  50

seq1  TTCCTTGTGAGAGAAATTACAGCCATTGTTCTTACTCTTTATGGATATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGTGAGAGAAATTACAGCCATTGTTCTTACTCTTTATGGATATGA  100

seq1  TGATAAACTGTCTTCTTTTTATATATGTTTATGCCTATAAATTAGTATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAACTGTCTTCTTTTTATATATGTTTATGCCTATAAATTAGTATTA  150

seq1  TTAACAGCTTCGGTCAGAGAAGTTATTGCTTTAAATTGGGTAATTGAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGCTTCGGTCAGAGAAGTTATTGCTTTAAATTGGGTAATTGAAGT  200

seq1  GGAAATTTCTGGTTTGTTGGGAGACTCAGTTGTGTCATGTGATGTTTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTTCTGGTTTGTTGGGAGACTCAGTTGTGTCATGTGATGTTTGGG  250

seq1  TAAAACAGACACCAGAGAGTGTGTGTGATATCCAATAAAAAAAAAACAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAGACACCAGAGAGTGTGTGTGATATCCAATAAAAAAAAAACAAT  300

seq1  AAAAACTATAGTTAAAAAAAAAGAAAAGAAAGAATTTAAGTATAACCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTATAGTTAAAAAAAAAGAAAAGAAAGAATTTAAGTATAACCCAA  350

seq1  CAGACAGTAAATGATGACCTTGCATTGGTTCACCTTGCGAAACTTTGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGTAAATGATGACCTTGCATTGGTTCACCTTGCGAAACTTTGTTG  400

seq1  GTCTTCCCTGATCTTTGCTTGTCATGATTTCATAGAGAGAAAATAACTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCCTGATCTTTGCTTGTCATGATTTCATAGAGAGAAAATAACTTC  450

seq1  TAGTGGTATTCTAGCTGCTTCTTGGTGCTTCCACAGACTCAGGCAGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGTATTCTAGCTGCTTCTTGGTGCTTCCACAGACTCAGGCAGATTT  500

seq1  GGTGGAGCCTTGCAGTTTTTTCTGTATTAAGCTGCTGCTACTGACTCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGCCTTGCAGTTTTTTCTGTATTAAGCTGCTGCTACTGACTCATG  550

seq1  TTTGGTGTTTACCGATGGGACTGGACCTCTGCTAGAGATTACTATTTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGTTTACCGATGGGACTGGACCTCTGCTAGAGATTACTATTTGAA  600

seq1  ATAACCCCAAAGAAGTACTTATAAACAGGTCCACAGCCCTTA-TTTTCTA  649
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATAACCCCAAAGAAGTACTTATAAACAGGTCCACAGCCCTTATTTTTCTA  650

seq1  -TTAACCTTTCTTTTTAGTAGATGGGCTAGAAGGGAAACTGAAGCATTTA  698
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACCTTTCTTTTTAGTAGATGGGCTAGAAGGGAAACTGAAGCATTTA  700

seq1  AGAACCCTTATTATACAATGTAATTTATATACAATGATATAATTTATATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCTTATTATACAATGTAATTTATATACAATGATATAATTTATATA  750

seq1  G-AAAGTAGGTAAACAAAACTAGTAAAGTATTTTTAGAATACATGCATGT  797
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTAGGTAAACAAAACTAGTAAAGTATTTTTAGAATACATGCATGT  800

seq1  AACTATG-TTAAAATAACCCTTTTCAAGCAATATGAAAATAACCCAAACC  846
      ||||||| |||||||||| |||||||||||||||||||||||||||||||
seq2  AACTATGTTTAAAATAACTCTTTTCAAGCAATATGAAAATAACCCAAACC  850

seq1  CACCAAAGATTATTAATTTCCTTAGTGACCTA-TTTATAAAACTCTGCTA  895
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CACCAAAGATTATTAATTTCCTTAGTGACCTATTTTATAAAACTCTGCTA  900

seq1  AAAC-TATATGACTAGCTAGCTAAAATAAGTTAGAGATATACAAGGACTT  944
      |||| ||| |||||||||||||||||||||||||||||||||||||| ||
seq2  AAACTTATTTGACTAGCTAGCTAAAATAAGTTAGAGATATACAAGGA-TT  949

seq1  TGAGAAACTTATGAGCCATTAAGATAAATACA-TTTAATAGTTTAAAAAT  993
      ||||||||||||||||||||||||||||| || |||| ||||||||||||
seq2  TGAGAAACTTATGAGCCATTAAGATAAATGCATTTTATTAGTTTAAAAAT  999

seq1  GAAATGGCATCAT-GCTA-TAGAAGAAAAGTATTAGTTCTATTTG-TTAG  1040
      ||||||||||| | |||| |||| |||||||| |||||||||||| ||||
seq2  GAAATGGCATCCTGGCTATTAGAGGAAAAGTA-TAGTTCTATTTGTTTAG  1048

seq1  TTGCAA-CCCTG-ATG-CTTATCTTAATTCTG-AATATCTTTG--CTCCT  1084
      |  ||| ||||| ||| |||||| |||||||| ||||||||||  |||||
seq2  TGTCAACCCCTGAATGCCTTATCCTAATTCTGAAATATCTTTGTCCTCCT  1098

seq1  CTGA  1088
      ||||
seq2  CTGA  1102

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information