BAC Information

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BAC

Clone NameB6Ng01-116E22
Chromosome18 (Build37)
Map Location 71,486,432 - 71,677,204
singlet/doubletdoublet
Overlap geneDcc
Upstream gene4930503L19Rik, Stard6, Poli, Mbd2, EG668032
Downstream geneLOC629684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116E22.bB6Ng01-116E22.g
ACCDH921337DH921338
length1,1441,213
definitionDH921337|Mus musculus domesticus DNA, BAC clone: B6Ng01-116E22, 5' end.DH921338|Mus musculus domesticus DNA, BAC clone: B6Ng01-116E22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,486,432 - 71,487,573)(71,675,948 - 71,677,204)
sequence
gaattcttagtgatccctggacttcaattattattctgcagtctatcaaa
caattgatactcccttcctttgcttctgtataccaacagctttcaaatga
ctgtgtccagtgagggaatcacaaaataatgcgactagagatgacagttg
atctccatggtaatgaatgtcaaaataatgatgttttcattcctcggttg
ctactaatgctattttttccaaataatgaattgacaggagattgagaatc
atcttgtaatggtccaccgagattcaggagtgtaaaactgtatggctagc
ctcaaactgtattgcctaaatagcccttttgtacaagatcagaaaatgcg
atcatttcaattaggctcctcacatcattatttcccagctgccttgctgc
taaactattaaaaaaaaaaagaaaccttccagattgttcaaattagagaa
ggaaggcaacaggatgatagagggcacagatgtgtcaccaaattttcatc
agctcgttttaattgatagatgacacaaaatggtatgcaaagtgtcagga
gctacctccatcaaagaaagagtacagaatcccccagtgggcttttctca
ccccaaagcaaatatcattacctgaatgagaggcacttttgcttcccatc
tgggtttctgactggctatggctgactggtgtgagatcttggcagctctg
gatgggggagtctcttcctgcagggtcggttcccgtaggcttctcgatat
ttttcatttccatttcttcatgatgtatccaaagatcgggaggccggagg
tccttctgactgcccttcctcttgctcacactgtgtgtggcccgtttcct
atgcagtgaagtgagagagcagatgtgagtgcttctatcccatggcgtgt
cctatcctcattcagtacaggttgcaagcagagcaagaaacaaaaggagt
ccctcgaggatcagatgaaaccccaaattggcagacttgtcctggctgtc
tttcctttttctcccccaaagcctcagcacatttctagagaatgctgaga
tgattccccagggtccctcactgcctgcccgaagcctttttcccagcctt
ccgccagcctgggagattcatgcccaaggtgacaatggtggagg
gaattcaaacaaaatgagtgccaggcgaaatctgcaattggaaaggtgac
tgctctccattctcaaggctgatgttcatcaaaagaaacttactctctgt
cctatgctatacccactcttacttagccttgagtaaaagagaacagaaaa
gcaataaacaaaaacaaacaaaacaagcaaacacaaccccccaaatctat
tattatgtattttctactcttagagttgcatacaccaactctacgaaagg
agagacctaagaaaataggaactgacttttcaaaatttctttctgttcta
ccattttgcccatcttcataaccaaacaagggtaagcactttgtaccttt
cttccttgtcaattattaatattctctgtactcagccttttgagctcttg
ttaaggaggccaaagaacatgggtaaattggtctaataaacagtgagtga
gctcacctagcagagttggccataaagatgcacctacagtgagggccatg
gtggattgtgtccctgggcatttgaattggcatttttatattgttatcaa
gaacacttgagagcttataataaaatctatttccagggacaaaagacatg
tgttggtttgtcttgatttcactgaaagagcgtagtggttacaaaatttc
agatagcaaaacctatatttattttaaatagcaatattctgataatattc
tgtaatctgcaccctttatcttagcaacaaaagcagggcctaagcagaat
gataatataatataatataatataatattataatataatataatataaca
taatatacatttaatcagaataagatggaagcaatgagacagtggtcata
atttgtttttgttctaaatgtatagtaaaaaacaaattaattacagtatc
agaattttaattctaaattcttaaaaaacagttttctagataaatataat
gtttataatatttttagtagagtttcagaagacaaatacacatggatctc
atttattgcccttactaccatgggccactgtaagaccacctccaacttgt
tttgagttatagcaaaaggatcatcagaaatatctcaatggtttcatagc
ttgagcattaaatgcgttaggtatgaataaaactaggaattgggattcta
actcgagccttacgccctggtcggtagtgcgaactatatctagtatttgt
gagcatctatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_71486432_71487573
seq2: B6Ng01-116E22.b_42_1185

seq1  GAATTCTTAGTGATCCCTGGACTTCAATTATTATTCTGCAGTCTATCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGTGATCCCTGGACTTCAATTATTATTCTGCAGTCTATCAAA  50

seq1  CAATTGATACTCCCTTCCTTTGCTTCTGTATACCAACAGCTTTCAAATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGATACTCCCTTCCTTTGCTTCTGTATACCAACAGCTTTCAAATGA  100

seq1  CTGTGTCCAGTGAGGGAATCACAAAATAATGCGACTAGAGATGACAGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCCAGTGAGGGAATCACAAAATAATGCGACTAGAGATGACAGTTG  150

seq1  ATCTCCATGGTAATGAATGTCAAAATAATGATGTTTTCATTCCTCGGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCATGGTAATGAATGTCAAAATAATGATGTTTTCATTCCTCGGTTG  200

seq1  CTACTAATGCTATTTTTTCCAAATAATGAATTGACAGGAGATTGAGAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAATGCTATTTTTTCCAAATAATGAATTGACAGGAGATTGAGAATC  250

seq1  ATCTTGTAATGGTCCACCGAGATTCAGGAGTGTAAAACTGTATGGCTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTAATGGTCCACCGAGATTCAGGAGTGTAAAACTGTATGGCTAGC  300

seq1  CTCAAACTGTATTGCCTAAATAGCCCTTTTGTACAAGATCAGAAAATGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACTGTATTGCCTAAATAGCCCTTTTGTACAAGATCAGAAAATGCG  350

seq1  ATCATTTCAATTAGGCTCCTCACATCATTATTTCCCAGCTGCCTTGCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTCAATTAGGCTCCTCACATCATTATTTCCCAGCTGCCTTGCTGC  400

seq1  TAAACTATTAAAAAAAAAAAGAAACCTTCCAGATTGTTCAAATTAGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTATTAAAAAAAAAAAGAAACCTTCCAGATTGTTCAAATTAGAGAA  450

seq1  GGAAGGCAACAGGATGATAGAGGGCACAGATGTGTCACCAAATTTTCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCAACAGGATGATAGAGGGCACAGATGTGTCACCAAATTTTCATC  500

seq1  AGCTCGTTTTAATTGATAGATGACACAAAATGGTATGCAAAGTGTCAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCGTTTTAATTGATAGATGACACAAAATGGTATGCAAAGTGTCAGGA  550

seq1  GCTACCTCCATCAAAGAAAGAGTACAGAATCCCCCAGTGGGCTTTTCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCTCCATCAAAGAAAGAGTACAGAATCCCCCAGTGGGCTTTTCTCA  600

seq1  CCCCAAAGCAAATATCATTACCTGAATGAGAGGCACTTTTGCTTCCCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAGCAAATATCATTACCTGAATGAGAGGCACTTTTGCTTCCCATC  650

seq1  TGGGTTTCTGACTGGCTATGGCTGACTGGTGTGAGATCTTGGCAGCTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTCTGACTGGCTATGGCTGACTGGTGTGAGATCTTGGCAGCTCTG  700

seq1  GATGGGGGAGTCTCTTCCTGCAGGGTCGGTTCCCGTAGGCTTCTCGATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGGGAGTCTCTTCCTGCAGGGTCGGTTCCCGTAGGCTTCTCGATAT  750

seq1  TTTTCATTTCCATTTCTTCATGATGTATCCAAAGATCGGGAGGCCGGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTTCCATTTCTTCATGATGTATCCAAAGATCGGGAGGCCGGAGG  800

seq1  TCCTTCTGACTGCCCTTCCTCTTGCTCACACTGTGTGTGGCCCGTTTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTGACTGCCCTTCCTCTTGCTCACACTGTGTGTGGCCCGTTTCCT  850

seq1  ATGCAGTGAAGTGAGAGAGCAGATGTGAGTGCTTCTATCCCATGGCGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTGAAGTGAGAGAGCAGATGTGAGTGCTTCTATCCCATGGCGTGT  900

seq1  CCTATCCTCATTCAGTACAGGTTGCAAGCAGAGCAAAGAAACAAAAGGAG  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCTATCCTCATTCAGTACAGGTTGCAAGCAGAGC-AAGAAACAAAAGGAG  949

seq1  TCCCTCGAGGAATCAGATGAAACCCCAAAATTGGCAGACTTGTCCTGGCT  1000
      |||||||||| ||||||||||||||| |||||||||||||||||||||||
seq2  TCCCTCGAGG-ATCAGATGAAACCCC-AAATTGGCAGACTTGTCCTGGCT  997

seq1  GTCTTTCC-TTTTCTCCCCCAGAGCCTCAGCACATTTCTAGGAGATGCTG  1049
      |||||||| |||||||||||| |||||||||||||||||||   ||||||
seq2  GTCTTTCCTTTTTCTCCCCCAAAGCCTCAGCACATTTCTAGAGAATGCTG  1047

seq1  AGATGAATCCCCAGGGT-CCTCACTGCCTGCCAGAAGCC-TTTCCCCAG-  1096
      |||||| |||||||||| |||||||||||||| |||||| ||| ||||| 
seq2  AGATGATTCCCCAGGGTCCCTCACTGCCTGCCCGAAGCCTTTTTCCCAGC  1097

seq1  CTTCAG-CAGC--TGGAGATTCATGCACAAGGTGACAATGGGTTGGAGG  1142
      |||| | ||||   |||||||||||| ||||||||||||||  ||||||
seq2  CTTCCGCCAGCCTGGGAGATTCATGCCCAAGGTGACAATGG--TGGAGG  1144

seq1: chr18_71675948_71677204
seq2: B6Ng01-116E22.g_66_1278 (reverse)

seq1  AGAATAGA-GCTTTCACAAATACTAATGAATAAATGTCAGCA-TACATGA  48
      | |||||| ||  ||||||||||||    ||| | ||  ||| |||    
seq2  AAAATAGATGC--TCACAAATACTA---GATATA-GTTCGCACTAC---C  41

seq1  GACAGTGGTGCTGTTATGCTTCTGATTGTTTTAGAGATCTCAAATCTCTA  98
      |||   || |    || |     | | |  ||||| ||| ||| || |||
seq2  GACCAGGGCG----TAAG-----GCTCGAGTTAGA-ATCCCAATTC-CTA  80

seq1  GTTTTTATTCCCATAACTTTAACGCATATAATTGGCTCTAGCTATGAAAA  148
      | |||||||  |||| |  |||||||| ||||  |||| ||||||| |||
seq2  G-TTTTATT--CATACC--TAACGCATTTAAT--GCTCAAGCTATG-AAA  122

seq1  CCACTGAGATAATTTCTGATGATCCTTTTGCTATAACTCAAAACATGTTG  198
      ||| |||||| |||||||||||||||||||||||||||||||||| ||||
seq2  CCATTGAGAT-ATTTCTGATGATCCTTTTGCTATAACTCAAAACAAGTTG  171

seq1  GA-GTGGTCTTTACAGTGGCCCCATGGTTAGTTAAGGGGCAATTAAATGA  247
      || |||||| ||||||||| ||||||| ||||  | |||||| |||||||
seq2  GAGGTGGTC-TTACAGTGG-CCCATGG-TAGT--AAGGGCAA-TAAATGA  215

seq1  GATCCATGTGTATTTGTTCCTTCTGAAAACTCTAACTTAAAAAATTATTA  297
      |||||||||||||||||  |||||| ||||||| |||   |||| |||||
seq2  GATCCATGTGTATTTGT--CTTCTG-AAACTCT-ACT---AAAAATATTA  258

seq1  TAAACATTATATTTTATTCTTAGAAAACTGTTTTTTAAAGAATTTAGAAT  347
      ||||||||||| |||||   |||||||||||||||| |||||||||||||
seq2  TAAACATTATA-TTTAT--CTAGAAAACTGTTTTTT-AAGAATTTAGAAT  304

seq1  TAAAATTCTGATACTGTAATTAATTTGTTTTTTTACTATACATTTAGAAC  397
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TAAAATTCTGATACTGTAATTAATTTG-TTTTTTACTATACATTTAGAAC  353

seq1  AAAAACAAATTATGACCACTGTCTCATTGCTTCCATCTTATTCTGATTAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAATTATGACCACTGTCTCATTGCTTCCATCTTATTCTGATTAA  403

seq1  ATGTATATTATGTTATATTATATTATATTATAATATTATATTATATTATA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATATTATGTTATATTATATTATATTATAATATTATATTATATTATA  453

seq1  TTATATTATCATTCTGCTTAGGCCCTGCTTTTGTTGCTAAGATAAAGGGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTATCATTCTGCTTAGGCCCTGCTTTTGTTGCTAAGATAAAGGGT  503

seq1  GCAGATTACAGAATATTATCAGAATATTGCTATTTAAAATAAATATAGGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTACAGAATATTATCAGAATATTGCTATTTAAAATAAATATAGGT  553

seq1  TTTGCTATCTGAAATTTTGTAACCACTACGCTCTTTCAGTGAAATCAAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTATCTGAAATTTTGTAACCACTACGCTCTTTCAGTGAAATCAAGA  603

seq1  CAAACCAACACATGTCTTTTGTCCCTGGAAATAGATTTTATTATAAGCTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAACACATGTCTTTTGTCCCTGGAAATAGATTTTATTATAAGCTC  653

seq1  TCAAGTGTTCTTGATAACAATATAAAAATGCCAATTCAAATGCCCAGGGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTGTTCTTGATAACAATATAAAAATGCCAATTCAAATGCCCAGGGA  703

seq1  CACAATCCACCATGGCCCTCACTGTAGGTGCATCTTTATGGCCAACTCTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATCCACCATGGCCCTCACTGTAGGTGCATCTTTATGGCCAACTCTG  753

seq1  CTAGGTGAGCTCACTCACTGTTTATTAGACCAATTTACCCATGTTCTTTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTGAGCTCACTCACTGTTTATTAGACCAATTTACCCATGTTCTTTG  803

seq1  GCCTCCTTAACAAGAGCTCAAAAGGCTGAGTACAGAGAATATTAATAATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTTAACAAGAGCTCAAAAGGCTGAGTACAGAGAATATTAATAATT  853

seq1  GACAAGGAAGAAAGGTACAAAGTGCTTACCCTTGTTTGGTTATGAAGATG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGGAAGAAAGGTACAAAGTGCTTACCCTTGTTTGGTTATGAAGATG  903

seq1  GGCAAAATGGTAGAACAGAAAGAAATTTTGAAAAGTCAGTTCCTATTTTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAATGGTAGAACAGAAAGAAATTTTGAAAAGTCAGTTCCTATTTTC  953

seq1  TTAGGTCTCTCCTTTCGTAGAGTTGGTGTATGCAACTCTAAGAGTAGAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTCTCTCCTTTCGTAGAGTTGGTGTATGCAACTCTAAGAGTAGAAA  1003

seq1  ATACATAATAATAGATTTGGGGGGTTGTGTTTGCTTGTTTTGTTTGTTTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATAATAATAGATTTGGGGGGTTGTGTTTGCTTGTTTTGTTTGTTTT  1053

seq1  TGTTTATTGCTTTTCTGTTCTCTTTTACTCAAGGCTAAGTAAGAGTGGGT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATTGCTTTTCTGTTCTCTTTTACTCAAGGCTAAGTAAGAGTGGGT  1103

seq1  ATAGCATAGGACAGAGAGTAAGTTTCTTTTGATGAACATCAGCCTTGAGA  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATAGGACAGAGAGTAAGTTTCTTTTGATGAACATCAGCCTTGAGA  1153

seq1  ATGGAGAGCAGTCACCTTTCCAATTGCAGATTTCGCCTGGCACTCATTTT  1247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAGCAGTCACCTTTCCAATTGCAGATTTCGCCTGGCACTCATTTT  1203

seq1  GTTTGAATTC  1257
      ||||||||||
seq2  GTTTGAATTC  1213