BAC Information

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BAC

Clone NameB6Ng01-116G12
Chromosome18 (Build37)
Map Location 52,580,979 - 52,582,126
singlet/doubletsinglet
Overlap genenone
Upstream geneEG240289, Ftmt
Downstream geneSrfbp1, Lox, Zfp474, 1700034E13Rik, Gykl1, Sncaip, A730036E13Rik, LOC667317, LOC100042430, Snx2, Gm1859, Snx24, Ppic
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116G12.bB6Ng01-116G12.g
ACCDH921412DH921413
length1,2731,129
definitionDH921412|Mus musculus domesticus DNA, BAC clone: B6Ng01-116G12, 5' end.DH921413|Mus musculus domesticus DNA, BAC clone: B6Ng01-116G12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctagtgtcagcccaagtccaagaggaatagattgcagcagttcct
tcttgcctgtggttcaggaacattctcacggttgccacatccaccctaaa
aatctcaagacaaaattcaaacaaggttgaaatgaatgatctcacttatt
cttgaatttataataaatgtggtttctggaaactgcctgcttacaaaatt
taggcctgattttaaatgctatagatgaaaaaaacatctgtttgactaat
gttttaaattttgttatgtttgcctgaatatttttattcatattgactga
aaaagaaggcattctggtttgatacaattactctccgaaataataagact
aaagtgccttaatatgggaaagaagaaaatagaggcgattttagagacac
atgacatatatgcaaatggaccaatttaagtacagacatgagatctgtac
aacctcctatgacagctggtgaatactcagtaaaagatgaggaaaggcgc
tcgcatccacactcacacacactcacactcacactcacaaataaagatgt
tccactatactacaagtatacttgctccactatgttcgtagcagctttat
ttgtaatagccagaaactggcaacaacccaaacgctcaactgaagaataa
agaaattgtggttcatttccataatgtaatactactcagctattaaaaac
aaggacatcatgaaatttccaggcaaatggatggaactcgaaaatatcat
ctgagtgaagtaaaccagaccccaaaggacatgcatgatatgtgctcact
tataagtggatattagccataaagtacatgatactcacgctacaattcat
aaacccaaaatagctgtcttagttagggtttcactgctgtgaacagacac
catgaccaaggcaagtcttataaaaccaacatttattggggctggcttac
aggttcagaggttcagtccattatcatcaagtgggagcatggcagtatcc
aggcaggcaggcacagtcagagcagagctgagagttctacatctcatcca
aaggctgctagtcaactttctagttgccgacgtcaggcaactacgtgtag
attcttatgccccatccacagtgacacacctactccaacaggtcacacct
attccaccaggcacacctcaaggtgttacacttcttggttcaagaaatat
acacatccattagcctaatagaaagaggccaagaagagcctgactttact
cgatgaaataattgtgctctttg
gaattccaaagaagtaggttctcacagcaatggagtaatgcctcagcagc
agaatagatgaacctgcgagcaagaatgagggcaagcaggggagaaacaa
aagcttccttctttgtctctttatatgagctatcacaagaaagtatggcc
ctgatgtagggtaggcttcctgaattcaaatgatctaaatttagagtgga
tcttctcactacgaatgatccaatcaagaagacatctcttcttcacagat
ttgttcaattgcttgtgtttagttgattccagatgtggtcaagttgataa
ccaagactagccatctcttgaggttaggaagatgacatggaagtaggggt
tttttaacagaggacagtgagcaaaaacagtgccaactctcgtgggattc
gagttacagtggcaagtgtaatctatgtagtagttaaaatgacctaaaat
gcagaaactcaatggttttttttggtccttttaatctaaagaggaacact
tcctcactgggtagaaaaactgttaccagaaagaagagagctatttccaa
ttccaatatcaatattgttaatagtacaacatggtgacagtaataacaaa
ccctaaaagtgtcttcccaatctagaataaaatgtatctccagagcccaa
tgaccttgcattaatgtgccattttaagccaccattttctcttaaactac
ttgtattgagcatatcaaagttgaagcaaagaatttcatgcttctgtagt
ttcctttaacagaaaggagtgatggagaaagcaaaaatgtataagcaact
taccaaacttaaatcgaaagcaccacttccctggtccttcaaacacttgt
ttaattaatatgattttagtggtaacagttacatgcttactgagaacact
taataagaaacacaatgatgaaattagttaagatactagagaggcatctg
gacttcagtctctcactcacatgctttgtgtcatgttatgttttaaagtg
catctaggacaattttgagcgcttatggagtaatacagaatgcacttcag
gctgatttgagcctatggtttttagtccacttggttgtgaaagggtcatc
ctattattaaagattatatacgacacatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_52580979_52582126
seq2: B6Ng01-116G12.g_69_1197

seq1  GAATTCCAAAGAAGTAGGTTCTCACAGCAATGGAGTAATGCCTCAGCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGAAGTAGGTTCTCACAGCAATGGAGTAATGCCTCAGCAGC  50

seq1  AGAATAGATGAACCTGCGAGCAAGAATGAGGGCAAGCAGGGGAGAAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGATGAACCTGCGAGCAAGAATGAGGGCAAGCAGGGGAGAAACAA  100

seq1  AAGCTTCCTTCTTTGTCTCTTTATATGAGCTATCACAAGAAAGTATGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCCTTCTTTGTCTCTTTATATGAGCTATCACAAGAAAGTATGGCC  150

seq1  CTGATGTAGGGTAGGCTTCCTGAATTCAAATGATCTAAATTTAGAGTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTAGGGTAGGCTTCCTGAATTCAAATGATCTAAATTTAGAGTGGA  200

seq1  TCTTCTCACTACGAATGATCCAATCAAGAAGACATCTCTTCTTCACAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCACTACGAATGATCCAATCAAGAAGACATCTCTTCTTCACAGAT  250

seq1  TTGTTCAATTGCTTGTGTTTAGTTGATTCCAGATGTGGTCAAGTTGATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCAATTGCTTGTGTTTAGTTGATTCCAGATGTGGTCAAGTTGATAA  300

seq1  CCAAGACTAGCCATCTCTTGAGGTTAGGAAGATGACATGGAAGTAGGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACTAGCCATCTCTTGAGGTTAGGAAGATGACATGGAAGTAGGGGT  350

seq1  TTTTTAACAGAGGACAGTGAGCAAAAACAGTGCCAACTCTCGTGGGATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAACAGAGGACAGTGAGCAAAAACAGTGCCAACTCTCGTGGGATTC  400

seq1  GAGTTACAGTGGCAAGTGTAATCTATGTAGTAGTTAAAATGACCTAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTACAGTGGCAAGTGTAATCTATGTAGTAGTTAAAATGACCTAAAAT  450

seq1  GCAGAAACTCAATGGTTTTTTTTGGTCCTTTTAATCTAAAGAGGAACACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAACTCAATGGTTTTTTTTGGTCCTTTTAATCTAAAGAGGAACACT  500

seq1  TCCTCACTGGGTAGAAAAACTGTTACCAGAAAGAAGAGAGCTATTTCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACTGGGTAGAAAAACTGTTACCAGAAAGAAGAGAGCTATTTCCAA  550

seq1  TTCCAATATCAATATTGTTAATAGTACAACATGGTGACAGTAATAACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATATCAATATTGTTAATAGTACAACATGGTGACAGTAATAACAAA  600

seq1  CCCTAAAAGTGTCTTCCCAATCTAGAATAAAATGTATCTCCAGAGCCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAAAGTGTCTTCCCAATCTAGAATAAAATGTATCTCCAGAGCCCAA  650

seq1  TGACCTTGCATTAATGTGCCATTTTAAGCCACCATTTTCTCTTAAACTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTGCATTAATGTGCCATTTTAAGCCACCATTTTCTCTTAAACTAC  700

seq1  TTGTATTGAGCATATCAAAGTTGAAGCAAAGAATTTCATGCTTCTGTAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTGAGCATATCAAAGTTGAAGCAAAGAATTTCATGCTTCTGTAGT  750

seq1  TTCC-TTAACAGAAAGGAGTGATGGAGAAAGCAAAAATGTATAAGCAACT  799
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTAACAGAAAGGAGTGATGGAGAAAGCAAAAATGTATAAGCAACT  800

seq1  TACCAAACTTAAATCGAAAGCACCACTTCCCTGGTCCTTCAAACACTTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAACTTAAATCGAAAGCACCACTTCCCTGGTCCTTCAAACACTTGT  850

seq1  TTAATTAATATGATTTTAGTGGTAACAGTTACATGCTTACTGAGAACACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAATATGATTTTAGTGGTAACAGTTACATGCTTACTGAGAACACT  900

seq1  TAATTAAGAAACACAATGATGAAATTAGTAAAGATACTAAGAGAAGCCAT  949
      ||| ||||||||||||||||||||||||| |||||||| |||| || |||
seq2  TAA-TAAGAAACACAATGATGAAATTAGTTAAGATACT-AGAG-AGGCAT  947

seq1  CTGGACATCCAGTCTCTCCACTCACAATGCTTTGTGTTCATGTTATGTTT  999
      |||||| | |||||||| ||||||| |||||||||| |||||||||| ||
seq2  CTGGAC-TTCAGTCTCT-CACTCAC-ATGCTTTGTG-TCATGTTATG-TT  992

seq1  TTAAAGTGCATCTAGGAACAATTTGGAGCGCTTATGGAGCAATACCAGAT  1049
      |||||||||||||||| ||||||| |||||||||||||| |||||   ||
seq2  TTAAAGTGCATCTAGG-ACAATTTTGAGCGCTTATGGAGTAATACAGAAT  1041

seq1  GCACTTTCCAAGCTGATTATGAAGCAGATGGTTTTATGATCACATTTGTG  1099
      ||||||  || ||||||| || |||  ||||||||  |  |||  ||| |
seq2  GCACTT--CAGGCTGATT-TG-AGCCTATGGTTTTTAGTCCAC--TTG-G  1084

seq1  TTGTAAAAGGTGCCATCCTATTATATAAGATTCACATTTACGACACATG  1148
      |||| ||||| | |||||||||||  ||||||   || |||||||||||
seq2  TTGTGAAAGG-GTCATCCTATTATTAAAGATT---ATATACGACACATG  1129