BAC Information

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BAC

Clone NameB6Ng01-116I05
Chromosome18 (Build37)
Map Location 63,886,306 - 64,066,833
singlet/doubletdoublet
Overlap geneWdr7
Upstream gene2700046A07Rik, Apcdd1, Napg, 9430028L06Rik, 9030411M15Rik, LOC627792, Txnl1
Downstream geneLOC629436, LOC667773, St8sia3, LOC433193, Onecut2, LOC667783, LOC100043304, Fech, Nars, Atp8b1, LOC629480
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116I05.bB6Ng01-116I05.g
ACCDH921491DH921492
length2521,069
definitionDH921491|Mus musculus domesticus DNA, BAC clone: B6Ng01-116I05, 5' end.DH921492|Mus musculus domesticus DNA, BAC clone: B6Ng01-116I05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,886,306 - 63,886,557)(64,065,762 - 64,066,833)
sequence
gaattccatgttcagcttggttctcagcctaagtgatgcttccaccctca
ttaattgggtcttccttcttcagttaacccgatctagaaggtattttgaa
ttcctacatggtttgtgttggctagttttatatcaacttggtgcaagcta
gagctatattaaaggagggaatttcaattgagaaaatatctcttaagttc
agtggtagggcttttgtgtgtgtgtgtgtgtgtgtatgtgctgggggggg
gg
gaattcttggaaaacactctattgacctcgaggcaatagaaaaactcaga
agtcaattctgacagggagtgtcagtaccagagagagagagagagagaga
gagagagagagagagagagagagagaccactctactgtctgctctcccta
agcctgcccttataatcttacaagaataaagaaggaaatatttgctattt
gctctttccagaaatatcaactaaaattgtaagcacgtttccagtgtaaa
cgcaatttcacgtggcaagcttggcatcatggacagagcagggcagcggg
gccctggagcccggttactgtgtccacagtacacccgccacagctgggca
tgaggggtggggaaggtgagagccgccctttaactgctgtgtgccccgct
gctaggcttctgccttaccatctccgtactccagcctgcaccaagtgggc
cacgcatgtaacaggccattttcaatctaaatcttgttagagattaataa
gcaaacattttcttgcttattatgcaatttatcatgatgaaaagtccact
ggactcctcaaggctacacgctgatacattcatttattcagagctgggta
gagaaagtcataccaatctttgtgacagaaaggatgtaatagcaagattt
aaattacctactgaaaactataaaattttatgtctcttgacatactgtct
gtagataaagcatatatatatatatatacatatacatgtttactttgctg
atataggttgatataaacttatttacaaaaacaaaattgtaatgctaaaa
ttaaaatgaaaactttccaggtaacaaaaaggtataaaaacttgagaaat
gtgtttgatgagatttggaaacaaaccacatttttagataatgacaatat
tgcatgcttctcagtcagtgccaagagactttcactagcagcggcctttg
ctgtggtctcccttgggcacgaaccgcaagtcagcaaggagctaaagtta
tggataatgtttaccatataaccagaaacaaaacatttatggatgtcctc
tcctgcttctccaagttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_63886306_63886557
seq2: B6Ng01-116I05.b_42_293

seq1  GAATTCCATGTTCAGCTTGGTTCTCAGCCCATGTGATGCTTCCACCCTCA  50
      ||||||||||||||||||||||||||||| | ||||||||||||||||||
seq2  GAATTCCATGTTCAGCTTGGTTCTCAGCCTAAGTGATGCTTCCACCCTCA  50

seq1  TTAATTGGGTCTTCCTTCTTCAGTTAACCCGATCTAGAAGGTATTTTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGGGTCTTCCTTCTTCAGTTAACCCGATCTAGAAGGTATTTTGAA  100

seq1  TTCCTACATGGTTTGTGTTGGCTAGTTTTATATCAACTTGGTGCAAGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACATGGTTTGTGTTGGCTAGTTTTATATCAACTTGGTGCAAGCTA  150

seq1  GAGCTATATTAAAGGAGGGAATTTCAATTGAGAAAATATCTCTTAAGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTATATTAAAGGAGGGAATTTCAATTGAGAAAATATCTCTTAAGTTC  200

seq1  AGTGGTAGGGCTTTTGTGTGTGTGTGTGTGTGTGTATGTGCTGGGGGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTAGGGCTTTTGTGTGTGTGTGTGTGTGTGTATGTGCTGGGGGGGG  250

seq1  GG  252
      ||
seq2  GG  252

seq1: chr18_64065762_64066833
seq2: B6Ng01-116I05.g_70_1138 (reverse)

seq1  AGAACTTAGAGGAGCAGG-GAGGACATCC-TAAATGTTTTGTTTCTTGGT  48
      ||||||| ||| |||||| |||||||||| ||||||||||||||| ||||
seq2  AGAACTTGGAGAAGCAGGAGAGGACATCCATAAATGTTTTGTTTC-TGGT  49

seq1  TAATATGGTAAAACATTATCCATAACCTTAGCTTCCTGCTGACTTGCTGT  98
      | ||||||| |||||||||||||||| |||||| | ||||||||||| ||
seq2  T-ATATGGT-AAACATTATCCATAACTTTAGCTCCTTGCTGACTTGCGGT  97

seq1  TCTGTGCCCAAGGGAGACCGCAGCACAGGCCGCTGCTAGTGAAGGTCTCT  148
      || |||||||||||||||| ||||| ||||||||||||||||| ||||||
seq2  TC-GTGCCCAAGGGAGACCACAGCAAAGGCCGCTGCTAGTGAAAGTCTCT  146

seq1  TGGC-CTGGCTTGAGAAGCATGCAATATTGTCATTATCTAAAAATGTGGT  197
      |||| ||| | |||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTGAC-TGAGAAGCATGCAATATTGTCATTATCTAAAAATGTGGT  195

seq1  TTGTTTCCAAATCTCATCAAACACAATTTCTCAAGTTTTTATACCTTTTT  247
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTGTTTCCAAATCTCATCAAACAC-ATTTCTCAAGTTTTTATACCTTTTT  244

seq1  GTTACCTGG-AAGTTTTCATTTTAATTTTAGCATTTACAATTTTGTTTTT  296
      ||||||||| ||||||||||||||||||||||| ||||||||||||||||
seq2  GTTACCTGGAAAGTTTTCATTTTAATTTTAGCA-TTACAATTTTGTTTTT  293

seq1  GTAAATAAGTTTATATCAAACCTATATCAGCAAAGTAAACATGTATATGT  346
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTAAATAAGTTTATATC-AACCTATATCAGCAAAGTAAACATGTATATGT  342

seq1  ATATATATATATATATGCTTTATCTACAGACAGTATGTCAAGAGACAT-A  395
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATATATATATATATATGCTTTATCTACAGACAGTATGTCAAGAGACATAA  392

seq1  AATTTTATAGTTTTCAGTAGGTAATTTAAATCTTGCTATTACATCCTTTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTATAGTTTTCAGTAGGTAATTTAAATCTTGCTATTACATCCTTTC  442

seq1  TGTCACAAAGATTGGTATGACTTTCTCTACCCAGCTCTGAATAAATGAAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACAAAGATTGGTATGACTTTCTCTACCCAGCTCTGAATAAATGAAT  492

seq1  GTATCAGCGTGTAGCCTTGAGGAGTCCAGTGGACTTTTCATCATGATAAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGCGTGTAGCCTTGAGGAGTCCAGTGGACTTTTCATCATGATAAA  542

seq1  TTGCATAATAAGCAAGAAAATGTTTGCTTATTAATCTCTAACAAGATTTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATAATAAGCAAGAAAATGTTTGCTTATTAATCTCTAACAAGATTTA  592

seq1  GATTGAAAATGGCCTGTTACATGCGTGGCCCACTTGGTGCAGGCTGGAGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAAAATGGCCTGTTACATGCGTGGCCCACTTGGTGCAGGCTGGAGT  642

seq1  ACGGAGATGGTAAGGCAGAAGCCTAGCAGCGGGGCACACAGCAGTTAAAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAGATGGTAAGGCAGAAGCCTAGCAGCGGGGCACACAGCAGTTAAAG  692

seq1  GGCGGCTCTCACCTTCCCCACCCCTCATGCCCAGCTGTGGCGGGTGTACT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGCTCTCACCTTCCCCACCCCTCATGCCCAGCTGTGGCGGGTGTACT  742

seq1  GTGGACACAGTAACCGGGCTCCAGGGCCCCGCTGCCCTGCTCTGTCCATG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACACAGTAACCGGGCTCCAGGGCCCCGCTGCCCTGCTCTGTCCATG  792

seq1  ATGCCAAGCTTGCCACGTGAAATTGCGTTTACACTGGAAACGTGCTTACA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAAGCTTGCCACGTGAAATTGCGTTTACACTGGAAACGTGCTTACA  842

seq1  ATTTTAGTTGATATTTCTGGAAAGAGCAAATAGCAAATATTTCCTTCTTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGTTGATATTTCTGGAAAGAGCAAATAGCAAATATTTCCTTCTTT  892

seq1  ATTCTTGTAAGATTATAAGGGCAGGCTTAGGGAGAGCAGACAGTAGAGTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGTAAGATTATAAGGGCAGGCTTAGGGAGAGCAGACAGTAGAGTG  942

seq1  GTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGG  992

seq1  TACTGACACTCCCTGTCAGAATTGACTTCTGAGTTTTTCTATTGCCTCGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGACACTCCCTGTCAGAATTGACTTCTGAGTTTTTCTATTGCCTCGA  1042

seq1  GGTCAATAGAGTGTTTTCCAAGAATTC  1072
      |||||||||||||||||||||||||||
seq2  GGTCAATAGAGTGTTTTCCAAGAATTC  1069