BAC Information

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BAC

Clone NameB6Ng01-117E24
Chromosome18 (Build37)
Map Location 60,842,903 - 60,983,031
singlet/doubletdoublet
Overlap geneNdst1, Rps14, LOC667619, Cd74, Tcof1
Upstream geneLOC667549, EG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo, LOC100042675
Downstream geneLOC100042699, Arsi, Camk2a, Slc6a7, Cdx1, Pdgfrb, Csf1r, A630042L21Rik, Slc26a2, Pde6a, EG667279, Ppargc1b, LOC667675, 4933429F08Rik, Csnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117E24.bB6Ng01-117E24.g
ACCDH922084DH922085
length3971,015
definitionDH922084|Mus musculus domesticus DNA, BAC clone: B6Ng01-117E24, 5' end.DH922085|Mus musculus domesticus DNA, BAC clone: B6Ng01-117E24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,842,903 - 60,843,305)(60,982,016 - 60,983,031)
sequence
cagaatagttggaggatagataggtagacagggagatgataagatagata
gatgggtgggtgggtgggtgaatgatgtatagacagacagacagatgaga
ataagctgagctgctcacactcgctccaactagagcacacctgccttagc
tgtcttcctattcctcgctgtcttcacaggctcagcaccccatctgcacc
aagccttctgtgtctgcccctggtaacagagctcccgctcttgtgctgtg
acgtctcatgacacttgctgctggccaagccgagaggctgctgcacgtgg
ggagctcggcatgcccacctgggacctaggctctcttctcctcccaagtg
tgtccaaaatgcccgccctcctcttttcaaggtggggaggggggagt
gaattccccactcagcaggtggccatctgatgtcactagaagaaaggcta
aattagacattccagctctcgccttgcttccttcccatgtggctgtgtgg
cctgggcgctcctcttctcccctctggacttaaggctttcctgttaggcc
agtggagtgggtggatactgcttagcttggggtcactgtgaaggtcagct
gggctctaagagctctgaagtgctgtgctgtgctgggtgtctggctgtta
tggggtgggagtgggcctagaagaccccaactccttgaagtttgcattac
aaagcccctccctcacccatttcctctccccttcccctgaccaagccttt
aatcagaggcgggatgtttctgtttttggttttcaaggcgattaaatccc
ctccagtttctgtcaaccgtaacagtagtccagctgtcccagctcctacc
ccagaaggagtccaggctgtgaacaccacaaagaaggcctcaggcaccac
tgcccagagctcctcctctgagagtgaggacggggacgaggacttgattc
ctgccacacaaccctccacctatggtaagcgctgctgcagtgggtgctgt
tcggccaggacgggccccagccacgcatgccctccccactgaggccagaa
ggcactaaccaggtggcctagcagaggcattggcgaggactggggactca
cccttaggcactgtattgttcccttaatgaggaaagctcgtcttgcctca
ttttgaaggatttacattcgaggcttctgtgtgctggctccaagtctgaa
agccagagggagcattctgggtggctacaggaaccagggctagtctaaac
cagagctctgccatagccacctgggccgtggggtacactattagcctggc
agtgaccttccttccccttagcaagaaataggagacaggtacatttatac
ttatccttttccagaacctaaggtgactgatgtctttgatgtggcgaagg
ccctctggtagcgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_60842903_60843305
seq2: B6Ng01-117E24.b_45_447

seq1  GAATTCCAGAATAGTTGGAGGATAGATAGGTAGACAGGGAGATGATAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAATAGTTGGAGGATAGATAGGTAGACAGGGAGATGATAAGA  50

seq1  TAGATAGATGGGTGGGTGGGTGGGTGAATGATGTATAGACAGACAGACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGATGGGTGGGTGGGTGGGTGAATGATGTATAGACAGACAGACAG  100

seq1  ATGAGAATAAGCTGAGCTGCTCACACTCGCTCCAACTAGAGCACACCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAATAAGCTGAGCTGCTCACACTCGCTCCAACTAGAGCACACCTGC  150

seq1  CTTAGCTGTCTTCCTATTCCTCGCTGTCTTCACAGGCTCAGCACCCCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTGTCTTCCTATTCCTCGCTGTCTTCACAGGCTCAGCACCCCATC  200

seq1  TGCACCAAGCCTTCTGTGTCTGCCCCTGGTAACAGAGCTCCCGCTCTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCAAGCCTTCTGTGTCTGCCCCTGGTAACAGAGCTCCCGCTCTTGT  250

seq1  GCTGTGACGTCTCATGACACTTGCTGCTGGCCAAGCCGAGAGGCTGCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGACGTCTCATGACACTTGCTGCTGGCCAAGCCGAGAGGCTGCTGC  300

seq1  ACGTGGGGAGCTCGGCATGCCCACCTGGGACCTAGGCTCTCTTCTCCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGGGGAGCTCGGCATGCCCACCTGGGACCTAGGCTCTCTTCTCCTCC  350

seq1  CAAGTGTGTCCAAAATGCCCGCCCTCCTCTTTTCAAGGTGGGGAGGGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTGTCCAAAATGCCCGCCCTCCTCTTTTCAAGGTGGGGAGGGGGG  400

seq1  AGT  403
      |||
seq2  AGT  403

seq1: chr18_60982016_60983031
seq2: B6Ng01-117E24.g_64_1078 (reverse)

seq1  TGCGCTACCAGAGGGCC-TCGCCACATACAAAGACACTCAGTCACCTTAG  49
      ||||||||||||||||| ||||||||| |||||||| |||||||||||||
seq2  TGCGCTACCAGAGGGCCTTCGCCACAT-CAAAGACA-TCAGTCACCTTAG  48

seq1  GTTCTGGGAAGAGAATAAGTATAAAATGTTACCTGTCTCCTTTTTCTATG  99
      ||||| |||| || |||||||| ||||| |||||||||||| ||||| ||
seq2  GTTCT-GGAAAAGGATAAGTAT-AAATG-TACCTGTCTCCTATTTCT-TG  94

seq1  CTAAGGGGATGGAAGCTCACTGCCAGGCTAATAGTGTACCCCACGG-CCA  148
      ||||||||| ||||| |||||||||||||||||||||||||||||| |||
seq2  CTAAGGGGAAGGAAGGTCACTGCCAGGCTAATAGTGTACCCCACGGCCCA  144

seq1  GGTGGCTATAGCAGAGCTCTGGTTTAGACTAG-CCTGGTTCCTGTAGCCA  197
      ||||||||| |||||||||||||||||||||| |||||||||||||||||
seq2  GGTGGCTATGGCAGAGCTCTGGTTTAGACTAGCCCTGGTTCCTGTAGCCA  194

seq1  -CCAGAATGCTCCCTCTGGCTTTCAGGCTTGGAGCCAGCACACAGAAGCC  246
       ||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCCAGAATGCTCCCTCTGGCTTTCAGACTTGGAGCCAGCACACAGAAGCC  244

seq1  TCGAATGTAATTCCTTCAAAATGAGGC-AGACGAGCTTTCCTCATTAAGG  295
      |||||||||| |||||||||||||||| ||||||||||||||||||||||
seq2  TCGAATGTAAATCCTTCAAAATGAGGCAAGACGAGCTTTCCTCATTAAGG  294

seq1  GAACAATACAGTGCCTAAGGCTGAGTCCCCAGTCCTCGCCAATGCCTCTG  345
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAACAATACAGTGCCTAAGGGTGAGTCCCCAGTCCTCGCCAATGCCTCTG  344

seq1  CTAGGCCACCTGGTTAGTGCCTTCTGGCCTCAGTGGGGAGGGCATGCGTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCCACCTGGTTAGTGCCTTCTGGCCTCAGTGGGGAGGGCATGCGTG  394

seq1  GCTGGGGCCCGTCCTGGCCGAACAGCACCCACTGCAGCAGCGCTTACCAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGCCCGTCCTGGCCGAACAGCACCCACTGCAGCAGCGCTTACCAT  444

seq1  AGGTGGAGGGTTGTGTGGCAGGAATCAAGTCCTCGTCCCCGTCCTCACTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAGGGTTGTGTGGCAGGAATCAAGTCCTCGTCCCCGTCCTCACTC  494

seq1  TCAGAGGAGGAGCTCTGGGCAGTGGTGCCTGAGGCCTTCTTTGTGGTGTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGAGGAGCTCTGGGCAGTGGTGCCTGAGGCCTTCTTTGTGGTGTT  544

seq1  CACAGCCTGGACTCCTTCTGGGGTAGGAGCTGGGACAGCTGGACTACTGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCTGGACTCCTTCTGGGGTAGGAGCTGGGACAGCTGGACTACTGT  594

seq1  TACGGTTGACAGAAACTGGAGGGGATTTAATCGCCTTGAAAACCAAAAAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGTTGACAGAAACTGGAGGGGATTTAATCGCCTTGAAAACCAAAAAC  644

seq1  AGAAACATCCCGCCTCTGATTAAAGGCTTGGTCAGGGGAAGGGGAGAGGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACATCCCGCCTCTGATTAAAGGCTTGGTCAGGGGAAGGGGAGAGGA  694

seq1  AATGGGTGAGGGAGGGGCTTTGTAATGCAAACTTCAAGGAGTTGGGGTCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGTGAGGGAGGGGCTTTGTAATGCAAACTTCAAGGAGTTGGGGTCT  744

seq1  TCTAGGCCCACTCCCACCCCATAACAGCCAGACACCCAGCACAGCACAGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGCCCACTCCCACCCCATAACAGCCAGACACCCAGCACAGCACAGC  794

seq1  ACTTCAGAGCTCTTAGAGCCCAGCTGACCTTCACAGTGACCCCAAGCTAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGAGCTCTTAGAGCCCAGCTGACCTTCACAGTGACCCCAAGCTAA  844

seq1  GCAGTATCCACCCACTCCACTGGCCTAACAGGAAAGCCTTAAGTCCAGAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTATCCACCCACTCCACTGGCCTAACAGGAAAGCCTTAAGTCCAGAG  894

seq1  GGGAGAAGAGGAGCGCCCAGGCCACACAGCCACATGGGAAGGAAGCAAGG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAGAGGAGCGCCCAGGCCACACAGCCACATGGGAAGGAAGCAAGG  944

seq1  CGAGAGCTGGAATGTCTAATTTAGCCTTTCTTCTAGTGACATCAGATGGC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAGCTGGAATGTCTAATTTAGCCTTTCTTCTAGTGACATCAGATGGC  994

seq1  CACCTGCTGAGTGGGGAATTC  1016
      |||||||||||||||||||||
seq2  CACCTGCTGAGTGGGGAATTC  1015