BAC Information

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BAC

Clone NameB6Ng01-117L09
Chromosome18 (Build37)
Map Location 65,608,787 - 65,703,009
singlet/doubletdoublet
Overlap geneMalt1, LOC638570
Upstream geneLOC100043304, Fech, Nars, Atp8b1, LOC629480, Nedd4l, Alpk2, LOC667816
Downstream geneLOC100042820, Zfp532, 5330437I02Rik, Sec11c, Grp, Rax, Cplx4, Lman1, Ccbe1, Pmaip1, LOC100042852
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117L09.bB6Ng01-117L09.g
ACCDH922381DH922382
length748732
definitionDH922381|Mus musculus domesticus DNA, BAC clone: B6Ng01-117L09, 5' end.DH922382|Mus musculus domesticus DNA, BAC clone: B6Ng01-117L09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,608,787 - 65,609,535)(65,702,279 - 65,703,009)
sequence
gaattcctactacattaattctctaagttttgtaagatgaacaaaaacaa
aaaactgaaaaattttagttcttttgtattactgtttatcataaatactt
aatatcataatataaatatttgtatcaaaatatatttcttctagttctga
attagaaaaagattgatttggtgaaaaagattttcaatgaaacatataaa
gtcagagacacataaatgaataataattattgatcagcattccctattgt
gagttatgtggttttggagtttgttctttttacattgaatacatttacag
tgactttgtcaagagtaggaacattgatgcatatgttgcttagataacat
gattctgtggtgtttatctctgttgacttaatgactacccttcctaagat
tatgagttacaatatgttcacatttgttttctctaacataaggaagaaca
gatgaggcaggggagtgcactgaaggaaatgcaatcctttggttcaagac
caagtctcctgcatgctgcatgctggttactctggggagaggtggagtgt
cctagctcactacgtgcagtgatagaaaaaatactagctctaataggtcg
tcgttttttttttttagatttattttattattgtatggaaggacactggg
attgtcttcagacccaccggaatgggcgccagatctttctacggtggttg
ataaccactttgtggctgctgggaattgaactcaggacctaaggaaga
gaattcactgcgttaaaagggaagtttagtttcatatctggaagctcctt
atcaacacattatgagatgcagaaatgaaaacatggctaatggttaatgc
ccagcaatggtggcacatacctcctctcaggaaacaaaggcaggccaatc
tctgagttcaagggtagcctgagctggggagtttcatgacaacaggggct
acaccgccatcaaccctctcccctaacccaagaaacccacaacaaaacaa
aacaaaactcccaaatcatggctaacaaaattagcaacaaggcggcccac
caacagtaagtgcttctccctcaaccagcacagatagactgccggcccca
attgcagggtgacttcttagtttccttacaagggctggctttgagcactg
gtcctgaaatacacaagcttgcacatacacaactttggaaagcatccaga
ccacatctgaagttcggcttctttaccttcttttttaccttcttctttta
cgcctggggagagaacagtgggaagtgtggccttgcgagtcaccataaat
ctgtgctaggttagttggatctcttcagatcttctagataatttggcccg
tatggtggtttggatatgctagaaccatggagtaaccttattaagacctg
ttggcttgttggagtgagagtagtcttgtctgagtaagcgtggccctgtt
gggggaagtatgtcactgtgcgggatgggctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_65608787_65609535
seq2: B6Ng01-117L09.b_41_788

seq1  GAATTCATACTACATTAATTCTCTAAGTTTTGTAAAATGAACAAAAACAA  50
      |||||| |||||||||||||||||||||||||||| ||||||||||||||
seq2  GAATTCCTACTACATTAATTCTCTAAGTTTTGTAAGATGAACAAAAACAA  50

seq1  AAAACTGAAAAATTTTAGTTCTTTTGTATTACAGTTTATCATAAATACTT  100
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAAACTGAAAAATTTTAGTTCTTTTGTATTACTGTTTATCATAAATACTT  100

seq1  AATATCATAATATAAATATTTGTATCAAAATATATTTCTTCTAGTTCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCATAATATAAATATTTGTATCAAAATATATTTCTTCTAGTTCTGA  150

seq1  ATTAGAAAAAGATTGATTTGGTGAAAAAGATTTTCAATAAAACATATAAA  200
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATTAGAAAAAGATTGATTTGGTGAAAAAGATTTTCAATGAAACATATAAA  200

seq1  GTCAGAGACACATAAATGAATAATAATTATTGATCAGCATTCCCTATTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGACACATAAATGAATAATAATTATTGATCAGCATTCCCTATTGT  250

seq1  GAGTTATGTGGTTTTGGAGTTTGTTCTTTTTACATTGAATACATTTACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTATGTGGTTTTGGAGTTTGTTCTTTTTACATTGAATACATTTACAG  300

seq1  TGACTTTGTCAAGAGTAGGAACATTGATGCATATGTTGCTTAGATAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTGTCAAGAGTAGGAACATTGATGCATATGTTGCTTAGATAACAT  350

seq1  GATTCTGTGGTGTTTATCTCTGTTGACTTAATGACTACCCTTCCTAAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGTGGTGTTTATCTCTGTTGACTTAATGACTACCCTTCCTAAGAT  400

seq1  TATGAGTTACAATATGTTCACATTTGTTTTCTCTAACATAAGGAAGAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTTACAATATGTTCACATTTGTTTTCTCTAACATAAGGAAGAACA  450

seq1  GATGAGGCAGTGGAGTGCACTGAAGGTAGTGCAATCCTTTGGTTCAAGAC  500
      |||||||||| ||||||||||||||| | |||||||||||||||||||||
seq2  GATGAGGCAGGGGAGTGCACTGAAGGAAATGCAATCCTTTGGTTCAAGAC  500

seq1  CAAGTCTCCTGCATGCTGCATGCTGGTTACTCTGGGGAGAGGTGGAGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTCCTGCATGCTGCATGCTGGTTACTCTGGGGAGAGGTGGAGTGT  550

seq1  CCTAGCTCACTACGTGCAGTGATAGAAAAAATACTAGCTCTAATAGGTCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCTCACTACGTGCAGTGATAGAAAAAATACTAGCTCTAATAGGTCG  600

seq1  TCGTTTTTTTTTTTTAAGATTTATTTTATTATTATATGTAAGTACACTGT  650
      ||||||||||||||| ||||||||||||||||| |||| ||| |||||| 
seq2  TCGTTTTTTTTTTTT-AGATTTATTTTATTATTGTATGGAAGGACACTGG  649

seq1  AGCTGTCTTCAGACACACCAGAAGTGGGCGTCAGATCTCATTACGGTGGT  700
         ||||||||||| |||| ||| |||||| |||||||   |||||||||
seq2  GATTGTCTTCAGACCCACCGGAA-TGGGCGCCAGATCTTTCTACGGTGGT  698

seq1  TGTGAGCCACCATGTGGTTGCT-GGAATTGAACTCAGGACCTCTGGAAGA  749
      ||  | ||||  ||||| |||| |||||||||||||||||||  ||||||
seq2  TGATAACCACTTTGTGGCTGCTGGGAATTGAACTCAGGACCTAAGGAAGA  748

seq1: chr18_65702279_65703009
seq2: B6Ng01-117L09.g_66_797 (reverse)

seq1  AAGCCCATCCC-CACAGTGACATACTTCCTCCAACAAGGCCACGCCCACT  49
      ||||||||||| ||||||||||||||||| |||||| ||||||||  |||
seq2  AAGCCCATCCCGCACAGTGACATACTTCCCCCAACAGGGCCACGCTTACT  50

seq1  TCAACAAGGCCACACCCACTCCAACAAGCCAACAGGTCCTAATAATGTTA  99
         ||||| | || | |||||||||||||||||||||| |||||| ||||
seq2  CAGACAAGACTACTCTCACTCCAACAAGCCAACAGGTCTTAATAAGGTTA  100

seq1  CTCACTGGGTCAAGCATATTCAAACCACCATACGGGCCAAATTATCTAGA  149
      |||  ||| || ||||||| ||||||||||||||||||||||||||||||
seq2  CTCCATGGTTCTAGCATATCCAAACCACCATACGGGCCAAATTATCTAGA  150

seq1  AGATCTGAAGAGATCCAACTAACCTAGCACAGATTTATGCTGACTCGCAA  199
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGATCTGAAGAGATCCAACTAACCTAGCACAGATTTATGGTGACTCGCAA  200

seq1  GGCCACACTTCCCACTGTTCTCTCCCCAGGCGTAAAAGAAGAAGGTAAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACACTTCCCACTGTTCTCTCCCCAGGCGTAAAAGAAGAAGGTAAAA  250

seq1  AAGAAGGTAAAGAAGCCGAACCTCAGATGTGGTCTGGATGCTTTCCAAAG  299
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAGAAGGTAAAGAAGCCGAACTTCAGATGTGGTCTGGATGCTTTCCAAAG  300

seq1  TTGTGTATCTGCAAGCTTGTGTATCTCAGGACCAGTGCTCAAAGCCAGCC  349
      |||||||| ||||||||||||||| |||||||||||||||||||||||||
seq2  TTGTGTATGTGCAAGCTTGTGTATTTCAGGACCAGTGCTCAAAGCCAGCC  350

seq1  CTTGTAAGGAAACTAAGAAGTCACCCTGCAATTGGGGCTGGCAGTCTATC  399
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTTGTAAGGAAACTAAGAAGTCACCCTGCAATTGGGGCCGGCAGTCTATC  400

seq1  TGTGCTGGTTGATGGTGAAGCACTTACTGTTCTTGGGCTGCCTTGTTGCT  449
      |||||||||||| || |||||||||||||||  ||||| |||||||||||
seq2  TGTGCTGGTTGAGGGAGAAGCACTTACTGTTGGTGGGCCGCCTTGTTGCT  450

seq1  AACTCTGTTAGCCATGATTTGGGAGTTTTGTTTTGTTTTGTTGTGGGTTT  499
      || | |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGTTAGCCATGATTTGGGAGTTTTGTTTTGTTTTGTTGTGGGTTT  500

seq1  CTTGGGTTAGGGGAGAGGGTTGATGACTGTGTAGCCCCTGTTGTCCTGAA  549
      ||||||||||||||||||||||||| | ||||||||||||||||| ||||
seq2  CTTGGGTTAGGGGAGAGGGTTGATGGCGGTGTAGCCCCTGTTGTCATGAA  550

seq1  ACTCTGCAGCTCAGGCTAGCCTTGAACTCAGAGATTTGCCTGCCTCTGCT  599
      ||||  |||||||||||| ||||||||||||||||| |||||||| || |
seq2  ACTCCCCAGCTCAGGCTACCCTTGAACTCAGAGATTGGCCTGCCTTTGTT  600

seq1  TCCTGAGTGGAGGTATGTGCCACCACTGCTGGGCATTAACCATTAGCCAT  649
      ||||||| ||||||||||||||||| ||||||||||||||||||||||||
seq2  TCCTGAGAGGAGGTATGTGCCACCATTGCTGGGCATTAACCATTAGCCAT  650

seq1  GTTTTCATTTCTGCATCTCATAATGTGTTGATAAGGAGCTTCCAGATATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCATTTCTGCATCTCATAATGTGTTGATAAGGAGCTTCCAGATATG  700

seq1  AAACTAAACTTCCCTTTTAACGCAGTGAATTC  731
      ||||||||||||||||||||||||||||||||
seq2  AAACTAAACTTCCCTTTTAACGCAGTGAATTC  732