BAC Information

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BAC

Clone NameB6Ng01-118E11
Chromosome18 (Build37)
Map Location 15,081,296 - 15,228,113
singlet/doubletdoublet
Overlap geneLOC669965, Kctd1, EG622268
Upstream geneZfp521, LOC100040094, LOC100040103, LOC100040391, LOC382096, LOC100040129, EG623867, Ss18, LOC100040446, Psma8, Taf4b
Downstream geneLOC100040151, Aqp4, LOC665473, Chst9, LOC670012, LOC100040551, EG225228
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118E11.bB6Ng01-118E11.g
ACCDH922800DH922801
length6311,097
definitionDH922800|Mus musculus domesticus DNA, BAC clone: B6Ng01-118E11, 5' end.DH922801|Mus musculus domesticus DNA, BAC clone: B6Ng01-118E11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,227,483 - 15,228,113)(15,081,296 - 15,082,407)
sequence
gaattctttatgggccaagtgacattttattgttaggatattataacaaa
gggagacagcacatttttcagattctgcaaacacacaaattccttataga
aaatcacatttctcttgtatattattcatttaaaaagacttaggaaactg
ctaagtaactcagggcagggaaggttcaaaattacagacacttagcagcg
attcgaatctaaacattctgctcctgttgattactatgttaagtttactg
tgacctgctttctggcatatcatcagaaacaaaaatatgtaacactcctc
cttgcccccagagatgcacacagaagagccaagcacttgagtagaatgtt
ttgcaggttagcctgggtgggttggggagcattccttgtgtctccaatgt
cccactctgagttcttctaaaacacaggtagggctttgcttccaataaat
taggaaattagaatcactgtgtgacaaaggtcataccatgtctttgccca
tttctgcaatactcaaagcctagggcctcaccctaacaacttgtcttgcc
aaaatccccaagtcacatacacagaaacttgagtggcaggcaattacttc
cttaagagtggtggtggtggtggtggtggtg
gaattcagaaaggcaggttgagagctgctcatcatccactggagacgctg
tctggctgcttttgccacctgccatttggttttctcctttgagttcactg
tacaccaagacagcgtccagtggacttttatagtaagggtggtctagcag
cttagacctaagaatgctctgcttgagagacccatcctcctccatctgga
agttcttgttctgagcaggctcctcagacacaggcccatctacactactc
acagatttgtctgctccagacactgacagtttcactctgtcgttgctgac
agcacttgtcccgctttcctgacccagtgtcctaagttctctttcagtgt
ccagagtgaacttgtcactagaaggatgttccattaaagggtttcatgaa
tttgctatccatgtctggaaagtatgactgacaccgacaagtgtctttag
gttctagggaagggactggactgcaattgtcacagtcagtgttattatcc
ctaaggttctcttgacggtgtccccagtgacctctatgaagcttcgctgg
gcctttcttagcttgcaaactctgctttttgttctgaattgctgggatct
gaaaatcttctaccgaaatctaatcatggatagtttctcatatatcatga
gagacactttgactctttgatattggttaagttggaacattttttggaat
caggagtctcctgtcctgtggtgctctagcccttggtagcaggcataaca
aactcgctttctatgtttgttcaagaccaccacagtcttgccactgtcac
ctggactttgactctccccactgaacttcatgggaaagtctgaagcttgt
gggtctgtgctagttcgtgaccattggctctacctaaaacagtatttgct
gacaaccaggaactgccttcaggggcttttctctctacagtatttatgac
ccaagtctttgctgagaagtaatttatctgcttgaagtttcagagacact
ttgagagaaatgaagtgtttagtgtcttttcttttcactttgcgtactaa
gtactacatttgagtagcagtcgagacttgtctttgaacaagcggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_15227483_15228113
seq2: B6Ng01-118E11.b_44_674 (reverse)

seq1  CACCACCACCACCACCACCACCACTCTTAAGGAAGTAATTGCCTGCCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCACCACCACCACCACCACTCTTAAGGAAGTAATTGCCTGCCACT  50

seq1  CAAGTTTCTGTGTATGTGACTTGGGGATTTTGGCAAGACAAGTTGTTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTCTGTGTATGTGACTTGGGGATTTTGGCAAGACAAGTTGTTAGG  100

seq1  GTGAGGCCCTAGGCTTTGAGTATTGCAGAAATGGGCAAAGACATGGTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGCCCTAGGCTTTGAGTATTGCAGAAATGGGCAAAGACATGGTATG  150

seq1  ACCTTTGTCACACAGTGATTCTAATTTCCTAATTTATTGGAAGCAAAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGTCACACAGTGATTCTAATTTCCTAATTTATTGGAAGCAAAGCC  200

seq1  CTACCTGTGTTTTAGAAGAACTCAGAGTGGGACATTGGAGACACAAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTGTGTTTTAGAAGAACTCAGAGTGGGACATTGGAGACACAAGGAA  250

seq1  TGCTCCCCAACCCACCCAGGCTAACCTGCAAAACATTCTACTCAAGTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCCAACCCACCCAGGCTAACCTGCAAAACATTCTACTCAAGTGCT  300

seq1  TGGCTCTTCTGTGTGCATCTCTGGGGGCAAGGAGGAGTGTTACATATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTTCTGTGTGCATCTCTGGGGGCAAGGAGGAGTGTTACATATTTT  350

seq1  TGTTTCTGATGATATGCCAGAAAGCAGGTCACAGTAAACTTAACATAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTGATGATATGCCAGAAAGCAGGTCACAGTAAACTTAACATAGTA  400

seq1  ATCAACAGGAGCAGAATGTTTAGATTCGAATCGCTGCTAAGTGTCTGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACAGGAGCAGAATGTTTAGATTCGAATCGCTGCTAAGTGTCTGTAA  450

seq1  TTTTGAACCTTCCCTGCCCTGAGTTACTTAGCAGTTTCCTAAGTCTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAACCTTCCCTGCCCTGAGTTACTTAGCAGTTTCCTAAGTCTTTTT  500

seq1  AAATGAATAATATACAAGAGAAATGTGATTTTCTATAAGGAATTTGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAATAATATACAAGAGAAATGTGATTTTCTATAAGGAATTTGTGTG  550

seq1  TTTGCAGAATCTGAAAAATGTGCTGTCTCCCTTTGTTATAATATCCTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGAATCTGAAAAATGTGCTGTCTCCCTTTGTTATAATATCCTAAC  600

seq1  AATAAAATGTCACTTGGCCCATAAAGAATTC  631
      |||||||||||||||||||||||||||||||
seq2  AATAAAATGTCACTTGGCCCATAAAGAATTC  631

seq1: chr18_15081296_15082407
seq2: B6Ng01-118E11.g_68_1164

seq1  GAATTCAGAAAGGCAGGTTGAGAGCTGCTCATCATCCACTGGAGACGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAAGGCAGGTTGAGAGCTGCTCATCATCCACTGGAGACGCTG  50

seq1  TCTGGCTGCTTTTGCCACCTGCCATTTGGTTTTCTCCTTTGAGTTCACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTGCTTTTGCCACCTGCCATTTGGTTTTCTCCTTTGAGTTCACTG  100

seq1  TACACCAAGACAGCGTCCAGTGGACTTTTATAGTAAGGGTGGTCTAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCAAGACAGCGTCCAGTGGACTTTTATAGTAAGGGTGGTCTAGCAG  150

seq1  CTTAGACCTAAGAATGCTCTGCTTGAGAGACCCATCCTCCTCCATCTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGACCTAAGAATGCTCTGCTTGAGAGACCCATCCTCCTCCATCTGGA  200

seq1  AGTTCTTGTTCTGAGCAGGCTCCTCAGACACAGGCCCATCTACACTACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTGTTCTGAGCAGGCTCCTCAGACACAGGCCCATCTACACTACTC  250

seq1  ACAGATTTGTCTGCTCCAGACACTGACAGTTTCACTCTGTCGTTGCTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTTGTCTGCTCCAGACACTGACAGTTTCACTCTGTCGTTGCTGAC  300

seq1  AGCACTTGTCCCGCTTTCCTGACCCAGTGTCCTAAGTTCTCTTTCAGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTGTCCCGCTTTCCTGACCCAGTGTCCTAAGTTCTCTTTCAGTGT  350

seq1  CCAGAGTGAACTTGTCACTAGAAGGATGTTCCATTAAAGGGTTTCATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTGAACTTGTCACTAGAAGGATGTTCCATTAAAGGGTTTCATGAA  400

seq1  TTTGCTATCCATGTCTGGAAAGTATGACTGACACCGACAAGTGTCTTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTATCCATGTCTGGAAAGTATGACTGACACCGACAAGTGTCTTTAG  450

seq1  GTTCTAGGGAAGGGACTGGACTGCAATTGTCACAGTCAGTGTTATTATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAGGGAAGGGACTGGACTGCAATTGTCACAGTCAGTGTTATTATCC  500

seq1  CTAAGGTTCTCTTGACGGTGTCCCCAGTGACCTCTATGAAGCTTCGCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGTTCTCTTGACGGTGTCCCCAGTGACCTCTATGAAGCTTCGCTGG  550

seq1  GCCTTTCTTAGCTTGCAAACTCTGCTTTTTGTTCTGAATTGCTGGGATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCTTAGCTTGCAAACTCTGCTTTTTGTTCTGAATTGCTGGGATCT  600

seq1  GAAAATCTTCTACCGAAATCTAATCATGGATAGTTTCTCATATATCATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCTTCTACCGAAATCTAATCATGGATAGTTTCTCATATATCATGA  650

seq1  GAGACACTTTGACTCTTTGATATTGGTTAAGTTGGAACATTTTTTGGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACTTTGACTCTTTGATATTGGTTAAGTTGGAACATTTTTTGGAAT  700

seq1  CAGGAGTCTCCTGTCCTGTGGTGCTCTAGCCCTTGGTAGCAGGCATAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTCTCCTGTCCTGTGGTGCTCTAGCCCTTGGTAGCAGGCATAACA  750

seq1  AACTCGCTTTCTATGTTTGTTCAAGACCACCACAGTCTTGCCACTGTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCGCTTTCTATGTTTGTTCAAGACCACCACAGTCTTGCCACTGTCAC  800

seq1  CTGGACTTTGACTCTCCCCACTGAACTTCATGGGAAAGTCTGAAGCTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTTTGACTCTCCCCACTGAACTTCATGGGAAAGTCTGAAGCTTGT  850

seq1  GGGTCTGTGCTAGGTTCGTGACCATTGGCTCTACCTAAAACAGTATTTGC  900
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGTGCTA-GTTCGTGACCATTGGCTCTACCTAAAACAGTATTTGC  899

seq1  TGACAAACCAGGAACTGCCTTCAGGGGGCTTTTCTCTCTACAGTATTTAT  950
      |||| |||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGAC-AACCAGGAACTGCCTTCA-GGGGCTTTTCTCTCTACAGTATTTAT  947

seq1  GACCCAAGTTCTTTGCTGAAGAAAGTAATTTATCTGCTTGAAGTTTCAGG  1000
      |||||||| ||||||||||   |||||||||||||||||||||||||| |
seq2  GACCCAAG-TCTTTGCTGA--GAAGTAATTTATCTGCTTGAAGTTTCA-G  993

seq1  AGACACTTTGAGGAGGAAATGAAGTGTTTAGTGTCTTTTCTTTTCACTTT  1050
      ||||||||||||   |||||||||||||||||||||||||||||||||||
seq2  AGACACTTTGAG--AGAAATGAAGTGTTTAGTGTCTTTTCTTTTCACTTT  1041

seq1  GGCGTACTAAGTACTAACATTTTGAGTAGCCAGTCCAGACTTTGTCTTTG  1100
       |||||||||||||| ||| ||||||||| ||||| |||| |||||||||
seq2  -GCGTACTAAGTACT-ACA-TTTGAGTAG-CAGTCGAGAC-TTGTCTTTG  1086

seq1  AACAAAGCGGTA  1112
      ||| ||||||||
seq2  AAC-AAGCGGTA  1097