BAC Information

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BAC

Clone NameB6Ng01-118M20
Chromosome18 (Build37)
Map Location 30,816,876 - 30,940,859
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666073, Pik3c3, LOC666094, LOC666100, EG666111, EG666114, LOC433168
Downstream geneRit2, EG666130, Syt4, LOC383420, Slc25a46, Sap130, LOC640549, Ammecr1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118M20.bB6Ng01-118M20.g
ACCDH923187DH923188
length1,2001,126
definitionDH923187|Mus musculus domesticus DNA, BAC clone: B6Ng01-118M20, 5' end.DH923188|Mus musculus domesticus DNA, BAC clone: B6Ng01-118M20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,939,656 - 30,940,859)(30,816,876 - 30,818,006)
sequence
gaattcagctaggagcttgtgtgtgtagctcggctgactggtcagtcttt
ctgttcagatgtacatctacatcacatacctcagagtggagagagatgga
gtggtgcaacacacttccctcttttgttccccagcaaggctctagccaag
gagtgcaagtacccttaattatagattcatgatccagtggtttcctacag
acctttagttgtccatttcagcatctagaatacctttcctagctgtgcaa
ccaagtaacaagtttcagttgaagcaagtctagcatcctaccttcttcat
gacaatgacagtaaaattaaagtccctccacatctccgtggctctgggta
caagaacatttttgatgctgtcataagattttatgcactgaagattctca
ttccctttccccactccagggagagaagatacacacatcccctttcccca
cagtaaatgccaggcacataacacaatgatccaggaaagaggaagtccta
tagaatccttctctgtagttatgagctttcttcttactttttcatataac
aggcattgggagaaagggtgcagagaatttaagaacacatgattttcagt
tagtttcctgtaagtctgctgcatatgagctatttttactgcaatatacc
aaggcatgaaataaaactacatcaaatttcaaatgaagcaaattgaatcc
agacttcagaaaagggaaagcaattatgtaattggctttcaggtatagaa
aaatcctcttcttcatctaccatcatatctttagccagccaaggaaacct
gctgattcttaatggtgtgaatacctttggcttctttttggggtgtataa
atctggaaccaaaacgtgtaaccatttgtttgtagatttgttcactcagt
gatatgcctgtgaggtcattcacagtgctgtatatgcttgggatgtattt
attttactgctatgtagtattctgtgtggatttatggcaatgtgttcatt
tttgtaattatttttagcagttattatatgctattgggagatggtcatat
gtgttttttgtagataataatattctttttttcagttgttgtttcttaag
agaattttatgggagatgtgtatactggtgcagcttcttatgagttaccc
atggtttccagtagctatgaaaccatacaacctgctggttataaataaaa

gaattcatagaggaatgcttcttactggcaagctccctgcctcacactgt
tgacctatgtgccctgggaagctgccatccacagtgggctcagccatctc
atatcaatcaccaaacaagacaatctttcacagatatttctgcaggctaa
tctgatgaagccaattctgcagctgagggtataaactagctcgaagggcc
tggagtgattgctcagtggccagagggcagagtgaccttctagtagcctg
ggagtcaattcctagtatctgcaggacagctaacaactctctgtacctcc
aacttcataggatcctagaccctctcctggcctccacagaccctgtaaac
atgtgatacacagacatacatgtagacagaacatgtatatacattaaaac
gcttaaaaacaaaacagattaactgaagtacttgattcctcacattgaga
ttttccactattactcatgacacacctatagcaaagaaaagaagccattg
gcagagtgaaatgaaaggaaggagatgaaagggaagaaagtgggtttggt
gattagctagtttaggtctcaaagatggcttccaggataaaagcagacaa
taaagattgtgtgcaagagaaaatattctgatttaactcgagccttgtgt
tctggagggtactttctggtttactgattgagttagtgagcagtttctct
aggcatccttagcatgcagtttgatcttaatatgtttggaacaacttggt
ttgttctaagcttccggcataattcactttgcaagaaagggtataagctt
ttatggcttcatctatatttttatctttttatttctgtaaagagtgaaca
aggtacaataatatctgacttgctttttgggagtttcatatgactggctc
agctattaaaaatatatctgtttagttcataagccctactttagaagttc
ttttgaaatagtttaaaatattgaagcatatacttttctatcaggttatt
gttcctctcctttgactttctgaagtcaggatagatgtagtcattagcaa
gcagtcattgtttagggttattcatgtcagcaaagaaatcacaccagtga
cacacagcttagttctctattggact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_30939656_30940859
seq2: B6Ng01-118M20.b_50_1249 (reverse)

seq1  TTTTATTTATTACCAGCA-GTTGTATGTTTTCATAGCTACTTTGAAACAT  49
      |||||||||| ||||||| |||||||| |||||||||||||   || || 
seq2  TTTTATTTATAACCAGCAGGTTGTATGGTTTCATAGCTACTGGAAACCA-  49

seq1  ATTTTGTTTATCT-ATAAG-AGCTGCACAGGTATACACATTCTTCCATAA  97
          ||  || || ||||| ||||||||  ||||||||| ||| ||||||
seq2  ----TGGGTAACTCATAAGAAGCTGCACCAGTATACACA-TCTCCCATAA  94

seq1  ATCTC-CTTAAGAAAC-ACAACTG--AAAAAGAATATTTATATCTAC-AA  142
      |  || |||||||||| |||||||  ||||||||||||  ||||||| ||
seq2  AATTCTCTTAAGAAACAACAACTGAAAAAAAGAATATTATTATCTACAAA  144

seq1  AAACACATATGACAATTCTTCCCAATAGCATTATTAATAACTGCCTAAAA  192
      ||||||||||||| ||   ||||||||||||   ||||||||||  ||||
seq2  AAACACATATGACCAT--CTCCCAATAGCAT--ATAATAACTGCTAAAAA  190

seq1  TAATTAACAAAAATGAACACATTGCCATAAATCCACACAGAATACTACAT  242
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATT-ACAAAAATGAACACATTGCCATAAATCCACACAGAATACTACAT  239

seq1  AGCAGTTAAAATAAATACATCCCAAGCATATACAGCACTGTGAATGACCT  292
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAG-TAAAATAAATACATCCCAAGCATATACAGCACTGTGAATGACCT  288

seq1  CACAGGCATATCACTGAGTGAACAAATCTACAAACAAATGGTTACACGTT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCATATCACTGAGTGAACAAATCTACAAACAAATGGTTACACGTT  338

seq1  TTGGTTCCAGATTTATACACCCCAAAAAGAAGCCAAAGGTATTCACACCA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCCAGATTTATACACCCCAAAAAGAAGCCAAAGGTATTCACACCA  388

seq1  TTAAGAATCAGCAGGTTTCCTTGGCTGGCTAAAGATATGATGGTAGATGA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAATCAGCAGGTTTCCTTGGCTGGCTAAAGATATGATGGTAGATGA  438

seq1  AGAAGAGGATTTTTCTATACCTGAAAGCCAATTACATAATTGCTTTCCCT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGGATTTTTCTATACCTGAAAGCCAATTACATAATTGCTTTCCCT  488

seq1  TTTCTGAAGTCTGGATTCAATTTGCTTCATTTGAAATTTGATGTAGTTTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAAGTCTGGATTCAATTTGCTTCATTTGAAATTTGATGTAGTTTT  538

seq1  ATTTCATGCCTTGGTATATTGCAGTAAAAATAGCTCATATGCAGCAGACT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATGCCTTGGTATATTGCAGTAAAAATAGCTCATATGCAGCAGACT  588

seq1  TACAGGAAACTAACTGAAAATCATGTGTTCTTAAATTCTCTGCACCCTTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGAAACTAACTGAAAATCATGTGTTCTTAAATTCTCTGCACCCTTT  638

seq1  CTCCCAATGCCTGTTATATGAAAAAGTAAGAAGAAAGCTCATAACTACAG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAATGCCTGTTATATGAAAAAGTAAGAAGAAAGCTCATAACTACAG  688

seq1  AGAAGGATTCTATAGGACTTCCTCTTTCCTGGATCATTGTGTTATGTGCC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGATTCTATAGGACTTCCTCTTTCCTGGATCATTGTGTTATGTGCC  738

seq1  TGGCATTTACTGTGGGGAAAGGGGATGTGTGTATCTTCTCTCCCTGGAGT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTTACTGTGGGGAAAGGGGATGTGTGTATCTTCTCTCCCTGGAGT  788

seq1  GGGGAAAGGGAATGAGAATCTTCAGTGCATAAAATCTTATGACAGCATCA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAGGGAATGAGAATCTTCAGTGCATAAAATCTTATGACAGCATCA  838

seq1  AAAATGTTCTTGTACCCAGAGCCACGGAGATGTGGAGGGACTTTAATTTT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTCTTGTACCCAGAGCCACGGAGATGTGGAGGGACTTTAATTTT  888

seq1  ACTGTCATTGTCATGAAGAAGGTAGGATGCTAGACTTGCTTCAACTGAAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCATTGTCATGAAGAAGGTAGGATGCTAGACTTGCTTCAACTGAAA  938

seq1  CTTGTTACTTGGTTGCACAGCTAGGAAAGGTATTCTAGATGCTGAAATGG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTACTTGGTTGCACAGCTAGGAAAGGTATTCTAGATGCTGAAATGG  988

seq1  ACAACTAAAGGTCTGTAGGAAACCACTGGATCATGAATCTATAATTAAGG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTAAAGGTCTGTAGGAAACCACTGGATCATGAATCTATAATTAAGG  1038

seq1  GTACTTGCACTCCTTGGCTAGAGCCTTGCTGGGGAACAAAAGAGGGAAGT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTGCACTCCTTGGCTAGAGCCTTGCTGGGGAACAAAAGAGGGAAGT  1088

seq1  GTGTTGCACCACTCCATCTCTCTCCACTCTGAGGTATGTGATGTAGATGT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGCACCACTCCATCTCTCTCCACTCTGAGGTATGTGATGTAGATGT  1138

seq1  ACATCTGAACAGAAAGACTGACCAGTCAGCCGAGCTACACACACAAGCTC  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGAACAGAAAGACTGACCAGTCAGCCGAGCTACACACACAAGCTC  1188

seq1  CTAGCTGAATTC  1204
      ||||||||||||
seq2  CTAGCTGAATTC  1200

seq1: chr18_30816876_30818006
seq2: B6Ng01-118M20.g_67_1192

seq1  GAATTCATAGAGGAATGCTTCTTACTGGCAAGCTCCCTGCCTCACACTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGAGGAATGCTTCTTACTGGCAAGCTCCCTGCCTCACACTGT  50

seq1  TGACCTATGTGCCCTGGGAAGCTGCCATCCACAGTGGGCTCAGCCATCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTATGTGCCCTGGGAAGCTGCCATCCACAGTGGGCTCAGCCATCTC  100

seq1  ATATCAATCACCAAACAAGACAATCTTTCACAGATATTTCTGCAGGCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAATCACCAAACAAGACAATCTTTCACAGATATTTCTGCAGGCTAA  150

seq1  TCTGATGAAGCCAATTCTGCAGCTGAGGGTATAAACTAGCTCGAAGGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGAAGCCAATTCTGCAGCTGAGGGTATAAACTAGCTCGAAGGGCC  200

seq1  TGGAGTGATTGCTCAGTGGCCAGAGGGCAGAGTGACCTTCTAGTAGCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGATTGCTCAGTGGCCAGAGGGCAGAGTGACCTTCTAGTAGCCTG  250

seq1  GGAGTCAATTCCTAGTATCTGCAGGACAGCTAACAACTCTCTGTACCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCAATTCCTAGTATCTGCAGGACAGCTAACAACTCTCTGTACCTCC  300

seq1  AACTTCATAGGATCCTAGACCCTCTCCTGGCCTCCACAGACCCTGTAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCATAGGATCCTAGACCCTCTCCTGGCCTCCACAGACCCTGTAAAC  350

seq1  ATGTGATACACAGACATACATGTAGACAGAACATGTATATACATTAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATACACAGACATACATGTAGACAGAACATGTATATACATTAAAAC  400

seq1  GCTTAAAAACAAAACAGATTAACTGAAGTACTTGATTCCTCACATTGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAAAACAAAACAGATTAACTGAAGTACTTGATTCCTCACATTGAGA  450

seq1  TTTTCCACTATTACTCATGACACACCTATAGCAAAGAAAAGAAGCCATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCACTATTACTCATGACACACCTATAGCAAAGAAAAGAAGCCATTG  500

seq1  GCAGAGTGAAATGAAAGGAAGGAGATGAAAGGGAAGAAAGTGGGTTTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTGAAATGAAAGGAAGGAGATGAAAGGGAAGAAAGTGGGTTTGGT  550

seq1  GATTAGCTAGTTTAGGTCTCAAAGATGGCTTCCAGGATAAAAGCAGACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGCTAGTTTAGGTCTCAAAGATGGCTTCCAGGATAAAAGCAGACAA  600

seq1  TAAAGATTGTGTGCAAGAGAAAATATTCTGATTTAACTCGAGCCTTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATTGTGTGCAAGAGAAAATATTCTGATTTAACTCGAGCCTTGTGT  650

seq1  TCTGGAGGGTACTTTCTGGTTTACTGATTGAGTTAGTGAGCAGTTTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGGGTACTTTCTGGTTTACTGATTGAGTTAGTGAGCAGTTTCTCT  700

seq1  AGGCATCCTTAGCATGCAGTTTGATCTTAATATGTTTGGAACAACTTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATCCTTAGCATGCAGTTTGATCTTAATATGTTTGGAACAACTTGGT  750

seq1  TTGTTCTAAGCTTCCGGCATAATTCACTTTGCAAG-AAGGGTATAAGCTT  799
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTGTTCTAAGCTTCCGGCATAATTCACTTTGCAAGAAAGGGTATAAGCTT  800

seq1  TTATGGCTTCATCTATATTTTTATCTTTTTATTTCTGTAAAGAGTGAACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGCTTCATCTATATTTTTATCTTTTTATTTCTGTAAAGAGTGAACA  850

seq1  AGGTACAATAATATCTGACTTGCTTTTTGGGAGTTTCATATGACTGGCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACAATAATATCTGACTTGCTTTTTGGGAGTTTCATATGACTGGCTC  900

seq1  AGCTATTAAAAATATATCTGTTTAGTTCATAAGCCCTACTTTAGAAGTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTAAAAATATATCTGTTTAGTTCATAAGCCCTACTTTAGAAGTTC  950

seq1  TTTTGAAATAGTTTAAAATATTGAAGCATATAACTTTTCTATCAGGGTTA  999
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  TTTTGAAATAGTTTAAAATATTGAAGCATAT-ACTTTTCTATCA-GGTTA  998

seq1  TTGTTCCTCTCCTTTGAACTTTCTGAAGGCCAGGAATAAGATGTAGTCAT  1049
      |||||||||||||||| |||||||||| | |||||   ||||||||||||
seq2  TTGTTCCTCTCCTTTG-ACTTTCTGAA-GTCAGGA--TAGATGTAGTCAT  1044

seq1  TAGCAAGCAGCCATTGTATAGGGTTATTCATGTCAGCAAAGACATCACAC  1099
      |||||||||| |||||| |||||||||||||||||||||||| |||||||
seq2  TAGCAAGCAGTCATTGTTTAGGGTTATTCATGTCAGCAAAGAAATCACAC  1094

seq1  ACAGTGACACACAGCTTAG-TCTCTATTGGACT  1131
       |||||||||||||||||| |||||||||||||
seq2  -CAGTGACACACAGCTTAGTTCTCTATTGGACT  1126