BAC Information

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BAC

Clone NameB6Ng01-119B06
Chromosome18 (Build37)
Map Location 49,037,375 - 49,187,804
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042301, EG433182, LOC383326, LOC100042323, LOC545470
Downstream geneDtwd2, Dmxl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119B06.bB6Ng01-119B06.g
ACCDH923385DH923386
length1,154508
definitionDH923385|Mus musculus domesticus DNA, BAC clone: B6Ng01-119B06, 5' end.DH923386|Mus musculus domesticus DNA, BAC clone: B6Ng01-119B06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,037,375 - 49,038,545)(49,187,291 - 49,187,804)
sequence
gaattccacaacgtaacataggcccacaattaacagaaacagtggtaact
tctatggtagcaggtaagggccatgatggaaaagactttacttatcacct
gttctctggttctgcccttcacaatatttcttaagcatctacttgtagta
ttttgtatgagtccattgaaatacttagatgatactgttagaatcttcaa
gatatgccaaaagagttccaacaataggtgatctcttctgttcacaatct
attgtgcatgcatgctaaaatacaagctccatcatcatctgtgatgaacc
aagagtagactccatgccttaaccataacctgaaagatgaagaatggctt
cactctaccttctaaagcaagcatatacatgcagtgtatgtttttggttt
tgggtgttttcccctctctctcattttactttttaaaagtttttatttat
ggttcaatttccaggggcaaaaaaactatattcaaagtaccagaagtgtt
aaattttctacaaagaacagttgttacctcagatgcagtttttaaaacta
tgccacatggattggagggtagaaaaaaaaaaaaaagaagaagacaaaga
atttacttctattataggaagcctatttagtcattttaaaaactgcaata
tccaaacctaaaaaatgtttctgtatgctgtatgtttaagggtagtgtac
aaaataaaaatatcaatgaactttatatgtttttagcaatattgaactaa
atacactgaattgcatttttaaaatgccttaacgtttaacttaacgtaaa
atatattttccacaaaaaaaatattataaggacattttcagtgaagaaaa
caaaaagtaaaacagtggaaacttccatgaggatgacatttattatataa
gaacacctgaagcagtcctgatggacttgggacgtgactgaatctcagcc
agatactgagataatataaatattcgccatcagttttctatacagatcct
catttcaacttaatgcatttcctctctgacaccatgattataaaatcaga
gaaaatattttatgaacagtatcaatcatagatgttctgtaacctctgga
aagccctgtggtcactgtgacagcacaggactacttgctcattgccctac
aggg
acatcaattctataggaacaagtgttaaataagtcacacaattggagtag
atggagactctacatatcatcttcagttgtatataaaacgtgcctgctgg
gtagcaggtatgagtaaaagatcttgaggcaaccacaagatttacctaga
agaaaacataatatcttgagagacaggcaggagaagattcagcaacccta
ctttacctctaaaacagtagggacaagacataggaagggttgtgtcactc
actaagactgggaaaatgaatagtgatcttcttgataaatagaacaaggc
agttttccatgagaaggaatacacaaagatgaagaaactacatcagggtg
caatatcacatacatgtagctggagatccctatcttaataaaccaagtct
caaagaaataaggtaggttttctctcatttctggtttcttgaatttatat
agatacataaaactataaaactgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_49037375_49038545
seq2: B6Ng01-119B06.b_48_1201

seq1  GAATTCCACAACGTAACATAGGCCCACAATTAACAGAAACAGTGGTAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAACGTAACATAGGCCCACAATTAACAGAAACAGTGGTAACT  50

seq1  TCTATGGTAGCAGGTAAGGGCCATGATGGAAAAGACTTTACTTATCACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGGTAGCAGGTAAGGGCCATGATGGAAAAGACTTTACTTATCACCT  100

seq1  GTTCTCTGGTTCTGCCCTTCACAATATTTCTTAAGCATCTACTTGTAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTGGTTCTGCCCTTCACAATATTTCTTAAGCATCTACTTGTAGTA  150

seq1  TTTTGTATGAGTCCATTGAAATACTTAGATGATACTGTTAGAATCTTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTATGAGTCCATTGAAATACTTAGATGATACTGTTAGAATCTTCAA  200

seq1  GATATGCCAAAAGAGTTCCAACAATAGGTGATCTCTTCTGTTCACAATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGCCAAAAGAGTTCCAACAATAGGTGATCTCTTCTGTTCACAATCT  250

seq1  ATTGTGCATGCATGCTAAAATACAAGCTCCATCATCATCTGTGATGAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGCATGCATGCTAAAATACAAGCTCCATCATCATCTGTGATGAACC  300

seq1  AAGAGTAGACTCCATGCCTTAACCATAACCTGAAAGATGAAGAATGGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTAGACTCCATGCCTTAACCATAACCTGAAAGATGAAGAATGGCTT  350

seq1  CACTCTACCTTCTAAAGCAAGCATATACATGCAGTGTATGTTTTTGGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTACCTTCTAAAGCAAGCATATACATGCAGTGTATGTTTTTGGTTT  400

seq1  TGGGTGTTTTCCCCTCTCTCTCATTTTACTTTTTAAAAGTTTTTATTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTTTTCCCCTCTCTCTCATTTTACTTTTTAAAAGTTTTTATTTAT  450

seq1  GGTTCAATTTCCAGGGGCAAAAAAACTATATTCAAAGTACCAGAAGTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAATTTCCAGGGGCAAAAAAACTATATTCAAAGTACCAGAAGTGTT  500

seq1  AAATTTTCTACAAAGAACAGTTGTTACCTCAGATGCAGTTTTTAAAACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTCTACAAAGAACAGTTGTTACCTCAGATGCAGTTTTTAAAACTA  550

seq1  TGCCACATGGATTGGAGGGTAGAAAAAAAAAAAAAAGAAGAAGACAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACATGGATTGGAGGGTAGAAAAAAAAAAAAAAGAAGAAGACAAAGA  600

seq1  ATTTACTTCTATTATAGGAAGCCTATTTAGTCATTTTAAAAACTGCAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTTCTATTATAGGAAGCCTATTTAGTCATTTTAAAAACTGCAATA  650

seq1  TCCAAACCTAAAAAATGTTTCTGTATGCTGTATGTTTAAGGGTAGTGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACCTAAAAAATGTTTCTGTATGCTGTATGTTTAAGGGTAGTGTAC  700

seq1  AAAATAAAAATATCAATGAACTTTATATGTTTTTAGCAATATTGAACTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAAATATCAATGAACTTTATATGTTTTTAGCAATATTGAACTAA  750

seq1  ATACACTGAATTGCATTTTTAAAATGCCTTAACGTTTAACTTAACGTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTGAATTGCATTTTTAAAATGCCTTAACGTTTAACTTAACGTAAA  800

seq1  ATATATTTTCCACAAAAAAAATATTATAAGGACATTTTCAGTGAAGAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTTCCACAAAAAAAATATTATAAGGACATTTTCAGTGAAGAAAA  850

seq1  CAAAAAGTAAAACAGTGGAAACTTCCATGAGGATGACATTTATTATATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGTAAAACAGTGGAAACTTCCATGAGGATGACATTTATTATATAA  900

seq1  GAACACCTGAAGCAGTCCTGATGGACTTGGGACGTGACTGAATCTCAGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAACACCTGAAGCAGTCCTGATGGACTTGGGACGTGACTGAATCTCA-GC  949

seq1  CAGATAACTGAGATAAATATTAAATATTCGCCATCAGTTTTCTAATACAG  1000
      ||||| |||||||| |||| ||||||||||||||||||||||| ||||||
seq2  CAGAT-ACTGAGAT-AATA-TAAATATTCGCCATCAGTTTTCT-ATACAG  995

seq1  AT-CTCATTTCAAACTTAATTGCATTTCCTCTCTTGACACCATGATTATA  1049
      || |||||||| ||||||| ||||||||||||| ||||||||||||||||
seq2  ATCCTCATTTC-AACTTAA-TGCATTTCCTCTC-TGACACCATGATTATA  1042

seq1  AAAATTCAAGGAGAAAATA-TTTATGAACAGGTTATCATTCATAGAATGT  1098
      |||  |||  ||||||||| |||||||||||  ||||| |||||| ||||
seq2  AAA--TCA--GAGAAAATATTTTATGAACAG--TATCAATCATAG-ATGT  1085

seq1  TCTGTTACCTCTGGAAAAAGCCCTGTGGTTCACTGTGACAAGCACAGTGA  1148
      ||||| ||||||||  |||||||||||| |||||||||| ||||||| ||
seq2  TCTGTAACCTCTGG--AAAGCCCTGTGG-TCACTGTGAC-AGCACAG-GA  1130

seq1  CTAC-TGCTCATTGGCTTACAGGG  1171
      |||| ||||||||| | |||||||
seq2  CTACTTGCTCATTGCCCTACAGGG  1154

seq1: chr18_49187291_49187804
seq2: B6Ng01-119B06.g_67_580 (reverse)

seq1  ACACACACACACACACACACACACACACACACACACAGTTTTATAGTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACAGTTTTATAGTTTT  50

seq1  ATGTATCTATATAAATTCAAGAAACCAGAAATGAGAGAAAACCTACCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCTATATAAATTCAAGAAACCAGAAATGAGAGAAAACCTACCTTA  100

seq1  TTTCTTTGAGACTTGGTTTATTAAGATAGGGATCTCCAGCTACATGTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGAGACTTGGTTTATTAAGATAGGGATCTCCAGCTACATGTATG  150

seq1  TGATATTGCACCCTGATGTAGTTTCTTCATCTTTGTGTATTCCTTCTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTGCACCCTGATGTAGTTTCTTCATCTTTGTGTATTCCTTCTCAT  200

seq1  GGAAAACTGCCTTGTTCTATTTATCAAGAAGATCACTATTCATTTTCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACTGCCTTGTTCTATTTATCAAGAAGATCACTATTCATTTTCCCA  250

seq1  GTCTTAGTGAGTGACACAACCCTTCCTATGTCTTGTCCCTACTGTTTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGTGAGTGACACAACCCTTCCTATGTCTTGTCCCTACTGTTTTAG  300

seq1  AGGTAAAGTAGGGTTGCTGAATCTTCTCCTGCCTGTCTCTCAAGATATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAAGTAGGGTTGCTGAATCTTCTCCTGCCTGTCTCTCAAGATATTA  350

seq1  TGTTTTCTTCTAGGTAAATCTTGTGGTTGCCTCAAGATCTTTTACTCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTTCTAGGTAAATCTTGTGGTTGCCTCAAGATCTTTTACTCATA  400

seq1  CCTGCTACCCAGCAGGCACGTTTTATATACAACTGAAGATGATATGTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTACCCAGCAGGCACGTTTTATATACAACTGAAGATGATATGTAGA  450

seq1  GTCTCCATCTACTCCAATTGTGTGACTTATTTAACACTTGTTCCTATAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCATCTACTCCAATTGTGTGACTTATTTAACACTTGTTCCTATAGA  500

seq1  ATTGATGTGAATTC  514
      ||||||||||||||
seq2  ATTGATGTGAATTC  514