BAC Information

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BAC

Clone NameB6Ng01-120A17
Chromosome18 (Build37)
Map Location 62,754,658 - 62,868,459
singlet/doubletdoublet
Overlap geneSpink10, EG408198
Upstream geneIl17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3, Sh3tc2, Adrb2, Htr4, Fbxo38
Downstream gene2700046A07Rik, Apcdd1, Napg, 9430028L06Rik, 9030411M15Rik, LOC627792, Txnl1, Wdr7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120A17.bB6Ng01-120A17.g
ACCDH924094DH924095
length1,1991,111
definitionDH924094|Mus musculus domesticus DNA, BAC clone: B6Ng01-120A17, 5' end.DH924095|Mus musculus domesticus DNA, BAC clone: B6Ng01-120A17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,754,658 - 62,755,848)(62,867,331 - 62,868,459)
sequence
gaattctttccacataattaactttttgttgcataaaatcccattttttt
aatactcaggaggcgagtaagaaacattctactatattggccatttacaa
atgtagaaaacgtttctccatctgtgtctgtctcctctgttgctttcctt
aaatgatcatacatgagcgatgtattgatctttcatagatatttgttgaa
taagagacagccaatagaaattaaaatttttattcaacatacttactgtt
gctgaagggtggctagtaacttctgaaaggaaaatacaatgaaagcatta
caaacagagcaaatcctgggatttcattactcaaagctgatttgttcttc
agttaaagacatttcatttcccccggcaatgaatttcagcatagacccta
tcattatgcaaaatcacagcagtttgcttagggacttgaacagccaatgg
gtaagcccttgaatcaggaaggcacatttatttattcattttggaggcta
tggtgtatttcaaaaagccagttgctactgaagccttatctctgatatac
tttctctcctaatcaacacagacagatatagggggtagatgtggtggtgc
acacattaaaccaaagcattcaggggcaaagacgggccgatctctgtgag
tccaaggacagcctagtctacgtagcaaatcccaggcacctacaactaca
tagttaaaccctgtgccaaacaaacaagcaaacagtaaagtaattagata
tcattaaaaaagttagaaatttattttaactacatacctcttcacaattt
aaaagcaaaatcattaacttgagacctccagagaagtgtcttttagttag
attctactatatgggatccatgaagacacctaaggacctctgtatttctg
caccatgggaacagccatctactgacacagctgtaagtatccttacacaa
taaatatttatagagaaattaggacattttttggtccatgggtgccaagt
aagaatccttgcaagggaagagattagattccaatccctcaaagtacagc
cagaaccacgatccctctccctgatcagatcttgtttctctcactttaat
ccactgatcagaatattttatgtcagccagccttagaatcctggggagaa
gttcatggaaaataaaatcttcaggactgtaatgtggaaccggtcttac
gaattccattctagctaaccatctcatgaataatgcaatactctaaaacc
acagcccaatctacttcctaaaccattgtaaattcctgtatatgggagcg
acttggcttttattgatagtgtaataccagaggctattctgaatgtcact
gtctagctcaaagacgttctaggactgtggaacactggcggaaggcttta
gctatgtcagaattcaatcttaaaaagcacttatgataaagagagcacgt
ggatccatccactagactaacgtgggaatggagaattaagagaactccag
actccaggaggagagcttccttgaaactctttttgcctcatgagcagctt
ttaggcaaccctgcctgacaggctgacttgactggagtgccgtggcattt
tcatatatgtatatattttaagatgcttctattatatatctccgtctctc
tctcccatacacacataatatacacatacatataaaagaattcctgagat
agtaagaggataaagcatttctacagggcagagcagaacatacctatgtg
catgtgaggggacatgacagagctacagggtagcaaaagcagattggaga
gtgttctcacaccatgagctcactgaggaggctgggcttcactctgccct
ctgtgaggcctcaaaggaggcggcctcaaaggaggctagctgggcttaac
agaagcacatctcctgtggtagagatccagcacgaatatgaagaacaggt
agaagggtggtgagacttggggcaggattccagctctacctcatcacaga
gaagaaggtgtcagtgtggtaggaagaatggtccttcattgcagcagcat
ttactccctggggttctccatttccaaatttcagttctcttccctctctt
ccctttctttccctctctctcgctccctttcatggcctttgcttccttct
tctttcttcatcaatttgtttgatgtgtaagatgtggaaaaaagagagtg
gctgagaacccaagaagaaagcgccatctgtcctgatgtggaaggcataa
tacctgcttcctccccacttggcacttgtttgttctgagtctggaattcc
ggttgagctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_62754658_62755848
seq2: B6Ng01-120A17.b_40_1238

seq1  GAATTCTTTCCACATAATTAACTTTTTGTTGCATAAAATCCCATTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCACATAATTAACTTTTTGTTGCATAAAATCCCATTTTTTT  50

seq1  AATACTCAGGAGGCGAGTAAGAAACATTCTACTATATTGGCCATTTACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTCAGGAGGCGAGTAAGAAACATTCTACTATATTGGCCATTTACAA  100

seq1  ATGTAGAAAACGTTTCTCCATCTGTGTCTGTCTCCTCTGTTGCTTTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAAAACGTTTCTCCATCTGTGTCTGTCTCCTCTGTTGCTTTCCTT  150

seq1  AAATGATCATACATGAGCGATGTATTGATCTTTCATAGATATTTGTTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATCATACATGAGCGATGTATTGATCTTTCATAGATATTTGTTGAA  200

seq1  TAAGAGACAGCCAATAGAAATTAAAATTTTTATTCAACATACTTACTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGACAGCCAATAGAAATTAAAATTTTTATTCAACATACTTACTGTT  250

seq1  GCTGAAGGGTGGCTAGTAACTTCTGAAAGGAAAATACAATGAAAGCATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGGGTGGCTAGTAACTTCTGAAAGGAAAATACAATGAAAGCATTA  300

seq1  CAAACAGAGCAAATCCTGGGATTTCATTACTCAAAGCTGATTTGTTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGAGCAAATCCTGGGATTTCATTACTCAAAGCTGATTTGTTCTTC  350

seq1  AGTTAAAGACATTTCATTTCCCCCGGCAATGAATTTCAGCATAGACCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAGACATTTCATTTCCCCCGGCAATGAATTTCAGCATAGACCCTA  400

seq1  TCATTATGCAAAATCACAGCAGTTTGCTTAGGGACTTGAACAGCCAATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATGCAAAATCACAGCAGTTTGCTTAGGGACTTGAACAGCCAATGG  450

seq1  GTAAGCCCTTGAATCAGGAAGGCACATTTATTTATTCATTTTGGAGGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCCCTTGAATCAGGAAGGCACATTTATTTATTCATTTTGGAGGCTA  500

seq1  TGGTGTATTTCAAAAAGCCAGTTGCTACTGAAGCCTTATCTCTGATATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTATTTCAAAAAGCCAGTTGCTACTGAAGCCTTATCTCTGATATAC  550

seq1  TTTCTCTCCTAATCAACACAGACAGATATAGGGGGTAGATGTGGTGGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCCTAATCAACACAGACAGATATAGGGGGTAGATGTGGTGGTGC  600

seq1  ACACATTAAACCAAAGCATTCAGGGGCAAAGACGGGCCGATCTCTGTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTAAACCAAAGCATTCAGGGGCAAAGACGGGCCGATCTCTGTGAG  650

seq1  TCCAAGGACAGCCTAGTCTACGTAGCAAATCCCAGGCACCTACAACTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGACAGCCTAGTCTACGTAGCAAATCCCAGGCACCTACAACTACA  700

seq1  TAGTTAAACCCTGTGCCAAACAAACAAGCAAACAGTAAAGTAATTAGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAAACCCTGTGCCAAACAAACAAGCAAACAGTAAAGTAATTAGATA  750

seq1  TCATTAAAAAAGTTAGAAATTTATTTTAACTACATACCTCTTCACAATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAAAAAAGTTAGAAATTTATTTTAACTACATACCTCTTCACAATTT  800

seq1  AAAAGCAAAATCATTAACTTGAGACCTCCAGAGAAGTGTCTTTTAGTTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAAAATCATTAACTTGAGACCTCCAGAGAAGTGTCTTTTAGTTAG  850

seq1  ATTCTACTATAT-GGATCCATGAAGACACCTAAGGACCTCTGTATTTCTG  899
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATTCTACTATATGGGATCCATGAAGACACCTAAGGACCTCTGTATTTCTG  900

seq1  CACCAT-GGAACAGCCATCTACTGACACAGCTGTAAGTATCCTTACACAA  948
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGGGAACAGCCATCTACTGACACAGCTGTAAGTATCCTTACACAA  950

seq1  TAAATATTTATAGAGAAATTAGGACATTTTTTGGTCCATGGGTGCCAAGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTTATAGAGAAATTAGGACATTTTTTGGTCCATGGGTGCCAAGT  1000

seq1  AAGAATCCTTGCAAGGGAAGAGATTAGATTCCAATCCCTCAAAGTACAGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCCTTGCAAGGGAAGAGATTAGATTCCAATCCCTCAAAGTACAGC  1050

seq1  CAGAACCACGATCCCTCTCCCTGATCAGATC-TGTTTCTCTCACTTTAAA  1097
      ||||||||||||||||||||||||||||||| ||||||||||||||| ||
seq2  CAGAACCACGATCCCTCTCCCTGATCAGATCTTGTTTCTCTCACTTT-AA  1099

seq1  TCCACTTGATCAG-ATA-TTTATGTCAG-CAG-CTTAG-ATCCTGGGAGA  1142
      ||||| ||||||| ||| |||||||||| ||| ||||| ||||||||   
seq2  TCCAC-TGATCAGAATATTTTATGTCAGCCAGCCTTAGAATCCTGGGGAG  1148

seq1  AAGTACATGAAAAATAAAATCTTCAGGACTGT-ATGTGACACC-GTCTTA  1190
      |||| |||| |||||||||||||||||||||| |||||  ||| ||||||
seq2  AAGTTCATGGAAAATAAAATCTTCAGGACTGTAATGTGGAACCGGTCTTA  1198

seq1  C  1191
      |
seq2  C  1199

seq1: chr18_62867331_62868459
seq2: B6Ng01-120A17.g_66_1176 (reverse)

seq1  TCAGCTCAACCTGGAATTTTCCAGACTTCTAGACAAAACCAAGTGCAAAG  50
      ||||||||||| ||||  |||||||||   ||| | || ||||||| |||
seq2  TCAGCTCAACC-GGAA--TTCCAGACT--CAGA-ACAAACAAGTGCCAAG  44

seq1  TGAGGAAGGAGCAGGTATTATGCCTTCCCACATCCAGGGACCAAGATGGC  100
      || ||| | ||||||||||||||||| |||||||   ||||  |||||| 
seq2  TGGGGAGGAAGCAGGTATTATGCCTT-CCACATC--AGGAC--AGATGG-  88

seq1  CGCTTTCTTCTTGGG-TCTCAGCCACT-TCTCTTTTTCACATCTTACACA  148
      ||||||||||||||| ||||||||||| ||| |||| |||||||||||||
seq2  CGCTTTCTTCTTGGGTTCTCAGCCACTCTCTTTTTTCCACATCTTACACA  138

seq1  TCAAACAAATTGAATGAAGGAAAGAAGGAAGGAAGCAAAGGCCATGGAAA  198
      |||||||||||| ||||| ||||||| |||||||||||||||||| ||||
seq2  TCAAACAAATTG-ATGAA-GAAAGAA-GAAGGAAGCAAAGGCCAT-GAAA  184

seq1  GGGAGCGAGGAGAGAGGGAAAGAAAGGGAAGGAGAGGGAAGAGAACCTGA  248
      |||||||| ||||||||||||||||||||| |||||||||||||| ||||
seq2  GGGAGCGA-GAGAGAGGGAAAGAAAGGGAA-GAGAGGGAAGAGAA-CTGA  231

seq1  AATTTGGAAATGGAGAACCCCAGGGGGTAAATGCTGCTGCAATGAAGGAC  298
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AATTTGGAAATGGAGAACCCCAGGGAGTAAATGCTGCTGCAATGAAGGAC  281

seq1  CATTCTTCCTACCACACTGACACCTTCTTCTCTGTGATGAGGTAGAGCTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTCCTACCACACTGACACCTTCTTCTCTGTGATGAGGTAGAGCTG  331

seq1  GAATCCCTGCCCCAAGTCTCACCACCCTTCTACCTGTTCTTCATATTCGT  398
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAT-CCTGCCCCAAGTCTCACCACCCTTCTACCTGTTCTTCATATTCGT  380

seq1  GCTGGATCTCTACCACAGGAGATGTGCTTCTGTTAAGCCCAGCTAGCCTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATCTCTACCACAGGAGATGTGCTTCTGTTAAGCCCAGCTAGCCTC  430

seq1  CTTTGAGGCCGCCTCCTTTGAGGCCTCACAGAGGGCAGAGTGAAGCCCAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGGCCGCCTCCTTTGAGGCCTCACAGAGGGCAGAGTGAAGCCCAG  480

seq1  CCTCCTCAGTGAGCTCATGGTGTGAGAACACTCTCCAATCTGCTTTTGCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCAGTGAGCTCATGGTGTGAGAACACTCTCCAATCTGCTTTTGCT  530

seq1  ACCCTGTAGCTCTGTCATGTCCCCTCACATGCACATAGGTATGTTCTGCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTAGCTCTGTCATGTCCCCTCACATGCACATAGGTATGTTCTGCT  580

seq1  CTGCCCTGTAGAAATGCTTTATCCTCTTACTATCTCAGGAATTCTTTTAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTGTAGAAATGCTTTATCCTCTTACTATCTCAGGAATTCTTTTAT  630

seq1  ATGTATGTGTATATTATGTGTGTATGGGAGAGAGAGACGGAGATATATAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTGTATATTATGTGTGTATGGGAGAGAGAGACGGAGATATATAA  680

seq1  TAGAAGCATCTTAAAATATATACATATATGAAAATGCCACGGCACTCCAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCATCTTAAAATATATACATATATGAAAATGCCACGGCACTCCAG  730

seq1  TCAAGTCAGCCTGTCAGGCAGGGTTGCCTAAAAGCTGCTCATGAGGCAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCAGCCTGTCAGGCAGGGTTGCCTAAAAGCTGCTCATGAGGCAAA  780

seq1  AAGAGTTTCAAGGAAGCTCTCCTCCTGGAGTCTGGAGTTCTCTTAATTCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTTCAAGGAAGCTCTCCTCCTGGAGTCTGGAGTTCTCTTAATTCT  830

seq1  CCATTCCCACGTTAGTCTAGTGGATGGATCCACGTGCTCTCTTTATCATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCCACGTTAGTCTAGTGGATGGATCCACGTGCTCTCTTTATCATA  880

seq1  AGTGCTTTTTAAGATTGAATTCTGACATAGCTAAAGCCTTCCGCCAGTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTTTTAAGATTGAATTCTGACATAGCTAAAGCCTTCCGCCAGTGT  930

seq1  TCCACAGTCCTAGAACGTCTTTGAGCTAGACAGTGACATTCAGAATAGCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGTCCTAGAACGTCTTTGAGCTAGACAGTGACATTCAGAATAGCC  980

seq1  TCTGGTATTACACTATCAATAAAAGCCAAGTCGCTCCCATATACAGGAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTATTACACTATCAATAAAAGCCAAGTCGCTCCCATATACAGGAAT  1030

seq1  TTACAATGGTTTAGGAAGTAGATTGGGCTGTGGTTTTAGAGTATTGCATT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATGGTTTAGGAAGTAGATTGGGCTGTGGTTTTAGAGTATTGCATT  1080

seq1  ATTCATGAGATGGTTAGCTAGAATGGAATTC  1129
      |||||||||||||||||||||||||||||||
seq2  ATTCATGAGATGGTTAGCTAGAATGGAATTC  1111