BAC Information

Click to search

BAC

Clone NameB6Ng01-120C19
Chromosome18 (Build37)
Map Location 30,980,893 - 31,061,822
singlet/doubletdoublet
Overlap genenone
Upstream genePik3c3, LOC666094, LOC666100, EG666111, EG666114, LOC433168
Downstream geneRit2, EG666130, Syt4, LOC383420, Slc25a46, Sap130, LOC640549, Ammecr1l, Polr2d, EG626327, Wdr33
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120C19.bB6Ng01-120C19.g
ACCDH924187DH924188
length1,1571,120
definitionDH924187|Mus musculus domesticus DNA, BAC clone: B6Ng01-120C19, 5' end.DH924188|Mus musculus domesticus DNA, BAC clone: B6Ng01-120C19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,980,893 - 30,982,052)(31,060,685 - 31,061,822)
sequence
gaattcttcatgtaaaacctttaaaactgccttatctgattttccccgta
agtatagatacaagcagtgtcatggcaagtgagctgaagttgctctgaga
atctatttgcagtgctattgagaaagcagataaacacatcacagaatggc
acaaatgtacactcacattctagtaccttggggaataattttttaatcct
aaggccacaagaggagaaaagcaaacttacatacaagtcctataggcaca
gtattggtgaagcaaaacttcaaacctaaggtgactgattggaaacccaa
acctgttgacatccccctacttcattcatacccacctcaggaatgatcta
gaaacactgacttaggaccagctaggtaccaatgagacctgtagggtgag
ttaggatgggccgcattgactcgacttcttgagtagagacatcagagctt
gacttaccattgatttacaatttgcatgggcaacactctgtcctttcact
aagaattcaaaattaaaactctacattttacccacgatatggccctcaga
atacaagttgtaaacatttgaattttggaatctagcatttctgggtgtgt
gtgtgtgtcaacactgtacattagcctttgataggctcctcttctgtgga
accccggtggctgttgttcgctttgaacattatttgttttgcagtgcctg
aaagcagatgaaattgatctttgttttccttctcacagaggctattgttg
cattttaagttgtcttcccacattcattgtaaaccactcatttgtgactc
ttataagaaagctagcttttgaaaaggcagaatacaattaaggatttcat
gtatttttcacttccagactcatattcactaatctttatttcttccaaac
taattcaaaccttactctatctcttatatgaccataccagactcaatttg
accaccatctctaggagggttctctaagaacattctctactttgccacta
agacctctctaaagcactaattacttcatatttctttcgctgagatcatc
caatagatcattctgtaatagtttacacttgcttaacagaggtttttatg
cacctacaaagcaagtctcagtcctacctcttacagacttggctttctcg
atcatct
gaattccaaatcataatcatgatacttcttagtgtaattttgttcccata
tggaatttggtttgctctgttttgaaatacaaaatgagcatagaatcata
agcaaaatgattaaaaatccgtttccatttacatcccccaaaggatgagt
catctgtcttaaatgttaataataaatcacagttttgcagaattgttacg
ggggaattatcataatttatgtcagtgaatttttttttccttttctgagg
cttctttttccttccatcaattgtcatttgctggccatggttttattctt
gagaaccgagaaaggaaacaaaggctgccttgcctgtactgggagagaat
agtatttcatctttgttgaccttcacagaaacctttagaggaaagcatta
ttattcctattcacagactgtggatcagaaaggttaaatcattttgcaag
gtcaccatcttgatgaatatcagaaatgatttctgctgaattttctcagt
ataataagccacattgtatactgcagtgagagacaggagctcacgagtct
gggagaaatacctttactaggtcattagcaggaccgtccatggtgatccc
ttaatgaaccaggcaactgatctgtgggttgttcctcaaagcaagtgctg
aggagaaaggagtgttgctgtgagctggacagggtaaggctatactttga
gttggaaacccaaaatgaaacggtgaacaaccaaccttatacagtagtaa
ctagtagaaagcttctagatttccaaagtcgggagagaagaacattccaa
tctggacaaataattggagcttcttatctagaccccccgtgtcttcttta
tcaattctgtttgtttgcaagtatttcacattccgttttccttgacaatg
gatatgctctgtgatagccattcaattattttattctaagcacctggtgc
atagtatgacattaaaacatttttggaagatggaagtgtgggagcaagcc
gggaagagcaagccgaacaggtaggagaaaagagtgggaagaggggaaga
gaactttaaatatatttgatgatatagactggagctgaggagtgacctct
tgaccttggtaagctacctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_30980893_30982052
seq2: B6Ng01-120C19.b_48_1204

seq1  GAATTCTTCATGTAAAACCTTTAAAACTGCCTTATCTGATTTTCCCCGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATGTAAAACCTTTAAAACTGCCTTATCTGATTTTCCCCGTA  50

seq1  AGTATAGATACAAGCAGTGTCATGGCAAGTGAGCTGAAGTTGCTCTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAGATACAAGCAGTGTCATGGCAAGTGAGCTGAAGTTGCTCTGAGA  100

seq1  ATCTATTTGCAGTGCTATTGAGAAAGCAGATAAACACATCACAGAATGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTTGCAGTGCTATTGAGAAAGCAGATAAACACATCACAGAATGGC  150

seq1  ACAAATGTACACTCACATTCTAGTACCTTGGGGAATAATTTTTTAATCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGTACACTCACATTCTAGTACCTTGGGGAATAATTTTTTAATCCT  200

seq1  AAGGCCACAAGAGGAGAAAAGCAAACTTACATACAAGTCCTATAGGCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCACAAGAGGAGAAAAGCAAACTTACATACAAGTCCTATAGGCACA  250

seq1  GTATTGGTGAAGCAAAACTTCAAACCTAAGGTGACTGATTGGAAACCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGGTGAAGCAAAACTTCAAACCTAAGGTGACTGATTGGAAACCCAA  300

seq1  ACCTGTTGACATCCCCCTACTTCATTCATACCCACCTCAGGAATGATCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTGACATCCCCCTACTTCATTCATACCCACCTCAGGAATGATCTA  350

seq1  GAAACACTGACTTAGGACCAGCTAGGTACCAATGAGACCTGTAGGGTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACTGACTTAGGACCAGCTAGGTACCAATGAGACCTGTAGGGTGAG  400

seq1  TTAGGATGGGCCGCATTGACTCGACTTCTTGAGTAGAGACATCAGAGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGATGGGCCGCATTGACTCGACTTCTTGAGTAGAGACATCAGAGCTT  450

seq1  GACTTACCATTGATTTACAATTTGCATGGGCAACACTCTGTCCTTTCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTACCATTGATTTACAATTTGCATGGGCAACACTCTGTCCTTTCACT  500

seq1  AAGAATTCAAAATTAAAACTCTACATTTTACCCACGATATGGCCCTCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTCAAAATTAAAACTCTACATTTTACCCACGATATGGCCCTCAGA  550

seq1  ATACAAGTTGTAAACATTTGAATTTTGGAATCTAGCATTTCTGGGTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGTTGTAAACATTTGAATTTTGGAATCTAGCATTTCTGGGTGTGT  600

seq1  GTGTGTGTCAACACTGTACATTAGCCTTTGATAGGCTCCTCTTCTGTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTCAACACTGTACATTAGCCTTTGATAGGCTCCTCTTCTGTGGA  650

seq1  ACCCCGGTGGCTGTTGTTCGCTTTGAACATTATTTGTTTTGCAGTGCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCGGTGGCTGTTGTTCGCTTTGAACATTATTTGTTTTGCAGTGCCTG  700

seq1  AAAGCAGATGAAATTGATCTTTGTTTTCCTTCTCACAGAGGCTATTGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGATGAAATTGATCTTTGTTTTCCTTCTCACAGAGGCTATTGTTG  750

seq1  CATTTTAAGTTGTCTTCCCACATTCATTGTAAACCACTCATTTGTGACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAAGTTGTCTTCCCACATTCATTGTAAACCACTCATTTGTGACTC  800

seq1  TTATAAGAAAGCTAGCTTTTGAAAAGGCAGAATACAATTAAGGATTTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGAAAGCTAGCTTTTGAAAAGGCAGAATACAATTAAGGATTTCAT  850

seq1  GTATTTTTCACTTCCAGACTCATATTCACTAATCTTTATTTCTTCCAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTCACTTCCAGACTCATATTCACTAATCTTTATTTCTTCCAAAC  900

seq1  TAATTCAAACCTTACTCTATCTCTTATATGACCATACCAGACTCAATTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCAAACCTTACTCTATCTCTTATATGACCATACCAGACTCAATTTG  950

seq1  ACCACCATCTCTAGGAGGGGTTCTCTAAGAACATTCTCTACTTTGCCACT  1000
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACCACCATCTCTAGGA-GGGTTCTCTAAGAACATTCTCTACTTTGCCACT  999

seq1  AAGACCTCTCTAAAGCACTAATTACTTCATA-TTCTTTCGCTGAGAATCA  1049
      ||||||||||||||||||||||||||||||| ||||||||||||| ||||
seq2  AAGACCTCTCTAAAGCACTAATTACTTCATATTTCTTTCGCTGAG-ATCA  1048

seq1  TCCAATAGATCATTCTGTAATAGTTTACAACTTGCTTAACAGAAGTTTTA  1099
      |||||||||||||||||||||||||||| |||||||||||||| ||||| 
seq2  TCCAATAGATCATTCTGTAATAGTTTAC-ACTTGCTTAACAGAGGTTTTT  1097

seq1  ATGCAACCTACAAAGC-AGTCTCAGTCCTACCTC-TACAGACTTGGCTTT  1147
      |||| ||||||||||| ||||||||||||||||| |||||||||||||||
seq2  ATGC-ACCTACAAAGCAAGTCTCAGTCCTACCTCTTACAGACTTGGCTTT  1146

seq1  CTCGAATTCATCT  1160
      |||||  ||||||
seq2  CTCGA--TCATCT  1157

seq1: chr18_31060685_31061822
seq2: B6Ng01-120C19.g_66_1185 (reverse)

seq1  AAGGTAGCTTATCATAGCTTCAATGAGTCACTCCTCAGCTCAGGTTCTTA  50
      ||||||||||| ||  |  ||||   |||||||||||||||  ||   ||
seq2  AAGGTAGCTTACCAAGG--TCAAGAGGTCACTCCTCAGCTCCAGT--CTA  46

seq1  TATCATCATATATATTTAAAAGTCTTCTTCCCTCTCTCCCACTCTTTTCT  100
      |||||||| |||||||||||  |||  | |||||| ||||||||||||||
seq2  TATCATCAAATATATTTAAAGTTCTCTTCCCCTCT-TCCCACTCTTTTCT  95

seq1  CCTACCTTGTTTCCCGCCTTTGCTTCTTCCCGTCTTTGCT-CCACACTTC  149
      |||||| ||||   || | |||| |||||||| | ||||| |||||||||
seq2  CCTACC-TGTT---CGGC-TTGC-TCTTCCCGGC-TTGCTCCCACACTTC  138

seq1  CATCTTTCCAAAATATGTTTTAATGTCATACTATGCA-CAGGTGCTTAGA  198
      |||| |||||||| ||||||||||||||||||||||| ||||||||||||
seq2  CATC-TTCCAAAA-ATGTTTTAATGTCATACTATGCACCAGGTGCTTAGA  186

seq1  ATAAAATAATTGAATGGCTATCACAGAGCATATCCATTGTCAAGGAAAAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAATTGAATGGCTATCACAGAGCATATCCATTGTCAAGGAAAAC  236

seq1  GGAATGTGAAAATACTTGCAAACAAAACAGAATTTGATAAAGAAGACACG  298
      |||||||| |||||||||||||| |||||||| |||||||||||||||||
seq2  GGAATGTG-AAATACTTGCAAAC-AAACAGAA-TTGATAAAGAAGACACG  283

seq1  GTGGGGTTCTAGATAAGAAGCTCCAATTATTTTGTCCAGATTGGAATGTT  348
        |||| |||||||||||||||||||||| ||||||||||||||||||||
seq2  --GGGGGTCTAGATAAGAAGCTCCAATTA-TTTGTCCAGATTGGAATGTT  330

seq1  CCTTCTCT-CCGACTTTGGAAATCTAGAAGCTTTCTACTAGTTACTACTG  397
       ||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  -CTTCTCTCCCGACTTTGGAAATCTAGAAGCTTTCTACTAGTTACTACTG  379

seq1  TATAAGGTTGGTTGTTCACCGTTTCATTTTGGGTTTCCAACTCAAAGTAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGTTGGTTGTTCACCGTTTCATTTTGGGTTTCCAACTCAAAGTAT  429

seq1  AGCCTTACCCTGTCCAGCTCACAGCAACACTCCTTTCTCCTCAGCACTTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTACCCTGTCCAGCTCACAGCAACACTCCTTTCTCCTCAGCACTTG  479

seq1  CTTTGAGGAACAACCCACAGATCAGTTGCCTGGTTCATTAAGGGATCACC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGGAACAACCCACAGATCAGTTGCCTGGTTCATTAAGGGATCACC  529

seq1  ATGGACGGTCCTGCTAATGACCTAGTAAAGGTATTTCTCCCAGACTCGTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACGGTCCTGCTAATGACCTAGTAAAGGTATTTCTCCCAGACTCGTG  579

seq1  AGCTCCTGTCTCTCACTGCAGTATACAATGTGGCTTATTATACTGAGAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTGTCTCTCACTGCAGTATACAATGTGGCTTATTATACTGAGAAA  629

seq1  ATTCAGCAGAAATCATTTCTGATATTCATCAAGATGGTGACCTTGCAAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGCAGAAATCATTTCTGATATTCATCAAGATGGTGACCTTGCAAAA  679

seq1  TGATTTAACCTTTCTGATCCACAGTCTGTGAATAGGAATAATAATGCTTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTAACCTTTCTGATCCACAGTCTGTGAATAGGAATAATAATGCTTT  729

seq1  CCTCTAAAGGTTTCTGTGAAGGTCAACAAAGATGAAATACTATTCTCTCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAAAGGTTTCTGTGAAGGTCAACAAAGATGAAATACTATTCTCTCC  779

seq1  CAGTACAGGCAAGGCAGCCTTTGTTTCCTTTCTCGGTTCTCAAGAATAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACAGGCAAGGCAGCCTTTGTTTCCTTTCTCGGTTCTCAAGAATAAA  829

seq1  ACCATGGCCAGCAAATGACAATTGATGGAAGGAAAAAGAAGCCTCAGAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGCCAGCAAATGACAATTGATGGAAGGAAAAAGAAGCCTCAGAAA  879

seq1  AGGAAAAAAAAATTCACTGACATAAATTATGATAATTCCCCCGTAACAAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAAAAATTCACTGACATAAATTATGATAATTCCCCCGTAACAAT  929

seq1  TCTGCAAAACTGTGATTTATTATTAACATTTAAGACAGATGACTCATCCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAAAACTGTGATTTATTATTAACATTTAAGACAGATGACTCATCCT  979

seq1  TTGGGGGATGTAAATGGAAACGGATTTTTAATCATTTTGCTTATGATTCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGATGTAAATGGAAACGGATTTTTAATCATTTTGCTTATGATTCT  1029

seq1  ATGCTCATTTTGTATTTCAAAACAGAGCAAACCAAATTCCATATGGGAAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCATTTTGTATTTCAAAACAGAGCAAACCAAATTCCATATGGGAAC  1079

seq1  AAAATTACACTAAGAAGTATCATGATTATGATTTGGAATTC  1138
      |||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTACACTAAGAAGTATCATGATTATGATTTGGAATTC  1120