BAC Information

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BAC

Clone NameB6Ng01-121L20
Chromosome18 (Build37)
Map Location 62,461,302 - 62,664,914
singlet/doubletdoublet
Overlap geneHtr4, Fbxo38
Upstream genePpargc1b, LOC667675, 4933429F08Rik, Csnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3, Sh3tc2, Adrb2
Downstream geneSpink10, EG408198, 2700046A07Rik, Apcdd1, Napg, 9430028L06Rik, 9030411M15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121L20.bB6Ng01-121L20.g
ACCDH925348DH925349
length1,1221,078
definitionDH925348|Mus musculus domesticus DNA, BAC clone: B6Ng01-121L20, 5' end.DH925349|Mus musculus domesticus DNA, BAC clone: B6Ng01-121L20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,461,302 - 62,462,444)(62,663,825 - 62,664,914)
sequence
gaattccagtaatgcacactgaactccattgtagggaagacatgagttat
aacaaatcacttcttgcattctggagaaggcagatgcgtgtaaattatca
atatgccactgtcacccagttatatatttatttatatgaccacttcttta
ctgattgttttcctccatgactggaggatgggatgtgaacattttgggac
ataggactgcaagttacatcaacaaagaaaatatgaactggaaaaaaaaa
atgagtccactacataaatttatttgaggtgcactttggggaaagtttat
attttaagttcttttttttttccagaactgaggaccgaacccagggcctt
gtgcttgctaggcaagcgctctaccactgagctaaatcccctccccaacc
ctatattttaagttcttaactttgtccagttcttacatttttcaggttaa
tttgagtgtgagactcagactgtatgtgagcctgttgtttaagggcaatg
ccagagatatgttgaaaactccttcatttgttcaaaactacactccttga
tggaaagcggcacactgtggagtgtatctcctacttcctgttgggattac
catcttacatttgtctgcttcctgactcagcaggctggcatttggctttg
gtcagctctggaccacaccaaagaaccaaagaccaatgcgaagtcaagaa
gttaaagagtgaagttctgtctgcacttggccttcggtagagctgggagt
gctctcttctctgtggcactaggcagagatctccctctgttaagggttgg
ctgtaactcctgtgagaaaacctggcctggaaaaggcaaggcgcctagcc
agcagtggggctggaaaccttgctgtcattctagcttagagaaaacattt
ctacatttgactggaggcaacttgtttgctctctctctaccctaaattac
cacagaaaaagaaattaaaataaagagatcggtatgtagcccttgtcgtc
tgtcactcacagactcatcgctgccacctcatttggaaacatgacgagca
ccacatcagaatcttcagctcacaagtcacttagtcatgactaggtgcta
gctgaatacgtgaagatactag
gaattccttcatattttgttttttttttttctgatatatatatgtagtga
agatttaactttggactctgaaaagcacacgagccaattataaaactgtt
catgactttgcttgttgaaagctttgaaacaaatgtttgtaaggaggtag
atttttaaactacttgattctgcataatttatgccatggcgcattgtttt
tacctggcgactttgatgatctctgctctccttggcatcagatctgatat
aaaactgcaatcatgaagacaaatttcatgaactattcttgcatcagcaa
caggacatagtagtatatactagtgtttcatggaccaaatgattctagtc
accatgactctctctcttctcatttcccaggcaccatctatgctcctcga
agaaaagggcagttgtctgcagacatttgtatggagacaataggagagga
gatctcagagatgcgccagatgaagaggggcatatttcagcgagtagtag
cgatttttatccactactgtgatgtcaatggagagccagttgaagacgac
tacatttaagtagacttttcctggctcttctggcccagagcagccaagag
tctctacacaggaaccttgggcttggaattgggaggccctggctcagttt
gttatataggaaatatataaggaacatggaaattgtatacaaagatttat
atatagaagaaatatacaaagatacttccaaatgtaacatctttatatcc
tatgtttatacatcttaattttaaagacgtcatttgaaaggcaggcaaat
cgtttagcagtggtcgtgttcttatccctgactttagttctcagatgtca
ggcgactgagcctattgcctctgctcctcacacgtccttcaatctgtgcc
tttttcttctcagcagagctgttgagtcaccctcctaaagagtgttgtag
ctgtgtgttgttgtaacatgatgccaactaacctcattcaaaaaatgatg
tttctgcactaagagtgggctctctttttgtgtgctgtattcgcctatcc
ttactgaaaagattgacgacttaaataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_62461302_62462444
seq2: B6Ng01-121L20.b_47_1168

seq1  GAATTCCAGTAATGCACACTGAACTCCATTGTAGGGAAGACATGAGTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTAATGCACACTGAACTCCATTGTAGGGAAGACATGAGTTAT  50

seq1  AACAAATCACTTCTTGCATTCTGGAGAAGGCAGATGCGTGTAAATTATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATCACTTCTTGCATTCTGGAGAAGGCAGATGCGTGTAAATTATCA  100

seq1  ATATGCCACTGTCACCCAGTTATATATTTATTTATATGACCACTTCTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCCACTGTCACCCAGTTATATATTTATTTATATGACCACTTCTTTA  150

seq1  CTGATTGTTTTCCTCCATGACTGGAGGATGGGATGTGAACATTTTGGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTGTTTTCCTCCATGACTGGAGGATGGGATGTGAACATTTTGGGAC  200

seq1  ATAGGACTGCAAGTTACATCAACAAAGAAAATATGAACTGGAAAAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGACTGCAAGTTACATCAACAAAGAAAATATGAACTGGAAAAAAAAA  250

seq1  ATGAGTCCACTACATAAATTTATTTGAGGTGCACTTTGGGGAAAGTTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTCCACTACATAAATTTATTTGAGGTGCACTTTGGGGAAAGTTTAT  300

seq1  ATTTTAAGTTCTTTTTTTTTTCCAGAACTGAGGACCGAACCCAGGGCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAGTTCTTTTTTTTTTCCAGAACTGAGGACCGAACCCAGGGCCTT  350

seq1  GTGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCTCCCCAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCTCCCCAACC  400

seq1  CTATATTTTAAGTTCTTAACTTTGTCCAGTTCTTACATTTTTCAGGTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTTTAAGTTCTTAACTTTGTCCAGTTCTTACATTTTTCAGGTTAA  450

seq1  TTTGAGTGTGAGACTCAGACTGTATGTGAGCCTGTTGTTTAAGGGCAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTGTGAGACTCAGACTGTATGTGAGCCTGTTGTTTAAGGGCAATG  500

seq1  CCAGAGATATGTTGAAAACTCCTTCATTTGTTCAAAACTACACTCCTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGATATGTTGAAAACTCCTTCATTTGTTCAAAACTACACTCCTTGA  550

seq1  TGGAAAGCGGCACACTGTGGAGTGTATCTCCTACTTCCTGTTGGGATTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGCGGCACACTGTGGAGTGTATCTCCTACTTCCTGTTGGGATTAC  600

seq1  CATCTTACATTTGTCTGCTTCCTGACTCAGCAGGCTGGCATTTGGCTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTACATTTGTCTGCTTCCTGACTCAGCAGGCTGGCATTTGGCTTTG  650

seq1  GTCAGCTCTGGACCACACCAAAGAACCAAAGACCAATGCGAAGTCAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCTCTGGACCACACCAAAGAACCAAAGACCAATGCGAAGTCAAGAA  700

seq1  GTTAAAGAGTGAAGTTCTGTCTGCACTTGGCCTTCGGTAGAGCTGGGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGAGTGAAGTTCTGTCTGCACTTGGCCTTCGGTAGAGCTGGGAGT  750

seq1  GCTCTCTTCTCTGTGGCACTAGGCAGAGATCTCCCTCTGTTAAGGGTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTTCTCTGTGGCACTAGGCAGAGATCTCCCTCTGTTAAGGGTTGG  800

seq1  CTGTAACTCCTGTGAGAAAACCTGGCCTGG-AAAGGCAAGGCGCCTAGCC  849
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTGTAACTCCTGTGAGAAAACCTGGCCTGGAAAAGGCAAGGCGCCTAGCC  850

seq1  AGCAGTGGGGCTGGAAACCTTGCTGTCATTCTAGCTTAGAGAAAACATTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGGGGCTGGAAACCTTGCTGTCATTCTAGCTTAGAGAAAACATTT  900

seq1  CTACATTTGACTGGAGGCAACTTGTTTTGCTCTCTCTCTACCCTAAATTA  949
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTACATTTGACTGGAGGCAACTTG-TTTGCTCTCTCTCTACCCTAAATTA  949

seq1  CCACAAGAAAAAGAAATTTAAAATAAAAGGAAGATCGGTATGTAAGCCCT  999
      |||| ||||||||||| ||||||||||    |||||||||||| ||||||
seq2  CCAC-AGAAAAAGAAA-TTAAAATAAA---GAGATCGGTATGT-AGCCCT  993

seq1  TGTCCGTCTGTCAACTCACAGACTCATCGCTGCCCACCCCAATTTGGGAA  1049
      ||| |||||||| ||||||||||||||||||| ||||| | ||||||  |
seq2  TGT-CGTCTGTC-ACTCACAGACTCATCGCTG-CCACCTC-ATTTGG--A  1037

seq1  AACATGACGAGCACCACCATCCAGAAATCTTCAGCTCAACAGTCATCTTA  1099
      |||||||||||||||| ||| ||| |||||||||||||  ||||| ||||
seq2  AACATGACGAGCACCA-CAT-CAG-AATCTTCAGCTCACAAGTCA-CTTA  1083

seq1  GTTCATGAACTAGGTGCTAGCTGAATACCGCTGAAGATTACTAG  1143
      | ||||| ||||||||||||||||||||   |||||| ||||||
seq2  G-TCATG-ACTAGGTGCTAGCTGAATAC--GTGAAGA-TACTAG  1122

seq1: chr18_62663825_62664914
seq2: B6Ng01-121L20.g_64_1141 (reverse)

seq1  TTATTTAAGTTCGTCAATCTTTTCATGTAAATGAATATGCCAAATATAAA  50
      ||||||||| ||||||||||||||| ||||  | ||| | | ||||  | 
seq2  TTATTTAAG-TCGTCAATCTTTTCA-GTAA--GGATA-GGCGAATA-CAG  44

seq1  CACACAAAAAAGAAGAGCCACATCTTAGTGCAGAAACATAATCTTCTCTG  100
      ||||||||||   ||||||   ||||||||||||||||| |  || | ||
seq2  CACACAAAAA--GAGAGCCCACTCTTAGTGCAGAAACATCA--TTTTTTG  90

seq1  ACTAAGGGTTTAGTTGGCATCATGGTAACAAAAACACACAAGATACAACA  150
      | | |||  |||||||||||||| || |||| ||||||| || |||||||
seq2  AATGAGG--TTAGTTGGCATCAT-GTTACAACAACACAC-AGCTACAACA  136

seq1  CTCTTTAGGAGGGTGACTCAAACAGCTCTGCTGGAGAAGAAAAAGGCACA  200
      ||||||||||||||||||| |||||||||||| |||||||||||||||||
seq2  CTCTTTAGGAGGGTGACTC-AACAGCTCTGCT-GAGAAGAAAAAGGCACA  184

seq1  GACTGAAGGACGTGGTGAGGAGCAGAGGCAATAGGCTCAGTCGCCTGACA  250
      || |||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GATTGAAGGACGT-GTGAGGAGCAGAGGCAATAGGCTCAGTCGCCTGACA  233

seq1  -CTGAGAACT-AAGTCA-GGAAAAGAACACGACCACTGCTAAACGATTTG  297
       ||||||||| |||||| ||| ||||||||||||||||||||||||||||
seq2  TCTGAGAACTAAAGTCAGGGATAAGAACACGACCACTGCTAAACGATTTG  283

seq1  CCTGCC-TTCAAATGACGTCTTT-AAATTAAGATGTATAAACATAGGATA  345
      |||||| |||||||||||||||| ||||||||||||||||||||||||||
seq2  CCTGCCTTTCAAATGACGTCTTTAAAATTAAGATGTATAAACATAGGATA  333

seq1  TAAAGATGTTACATTTGGAAGTATCTTTGTATATTTCTTCTATATATAAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATGTTACATTTGGAAGTATCTTTGTATATTTCTTCTATATATAAA  383

seq1  TCTTTGTATACAATTTCCATGTTCCTTATATATTTCCTATATAACAAACT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTATACAATTTCCATGTTCCTTATATATTTCCTATATAACAAACT  433

seq1  GAGCCAGGGCCTCCCAATTCCAAGCCCAAGGTTCCTGTGTAGAGACTCTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGGGCCTCCCAATTCCAAGCCCAAGGTTCCTGTGTAGAGACTCTT  483

seq1  GGCTGCTCTGGGCCAGAAGAGCCAGGAAAAGTCTACTTAAATGTAGTCGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTCTGGGCCAGAAGAGCCAGGAAAAGTCTACTTAAATGTAGTCGT  533

seq1  CTTCAACTGGCTCTCCATTGACATCACAGTAGTGGATAAAAATCGCTACT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACTGGCTCTCCATTGACATCACAGTAGTGGATAAAAATCGCTACT  583

seq1  ACTCGCTGAAATATGCCCCTCTTCATCTGGCGCATCTCTGAGATCTCCTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGCTGAAATATGCCCCTCTTCATCTGGCGCATCTCTGAGATCTCCTC  633

seq1  TCCTATTGTCTCCATACAAATGTCTGCAGACAACTGCCCTTTTCTTCGAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTGTCTCCATACAAATGTCTGCAGACAACTGCCCTTTTCTTCGAG  683

seq1  GAGCATAGATGGTGCCTGGGAAATGAGAAGAGAGAGAGTCATGGTGACTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATAGATGGTGCCTGGGAAATGAGAAGAGAGAGAGTCATGGTGACTA  733

seq1  GAATCATTTGGTCCATGAAACACTAGTATATACTACTATGTCCTGTTGCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATTTGGTCCATGAAACACTAGTATATACTACTATGTCCTGTTGCT  783

seq1  GATGCAAGAATAGTTCATGAAATTTGTCTTCATGATTGCAGTTTTATATC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAAGAATAGTTCATGAAATTTGTCTTCATGATTGCAGTTTTATATC  833

seq1  AGATCTGATGCCAAGGAGAGCAGAGATCATCAAAGTCGCCAGGTAAAAAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGATGCCAAGGAGAGCAGAGATCATCAAAGTCGCCAGGTAAAAAC  883

seq1  AATGCGCCATGGCATAAATTATGCAGAATCAAGTAGTTTAAAAATCTACC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCGCCATGGCATAAATTATGCAGAATCAAGTAGTTTAAAAATCTACC  933

seq1  TCCTTACAAACATTTGTTTCAAAGCTTTCAACAAGCAAAGTCATGAACAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACAAACATTTGTTTCAAAGCTTTCAACAAGCAAAGTCATGAACAG  983

seq1  TTTTATAATTGGCTCGTGTGCTTTTCAGAGTCCAAAGTTAAATCTTCACT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAATTGGCTCGTGTGCTTTTCAGAGTCCAAAGTTAAATCTTCACT  1033

seq1  ACATATATATATCAGAAAAAAAAAAAACAAAATATGAAGGAATTC  1090
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATATATCAGAAAAAAAAAAAACAAAATATGAAGGAATTC  1078