BAC Information

Click to search

BAC

Clone NameB6Ng01-123E22
Chromosome18 (Build37)
Map Location 79,292,546 - 79,462,238
singlet/doubletdoublet
Overlap genenone
Upstream geneSlc14a1, Slc14a2, EG620155, Setbp1
Downstream geneLOC100039242, LOC100039250, LOC383311, LOC433204, LOC545267, LOC100040632, LOC620963, LOC100040604, LOC620692, LOC100040593, LOC639825, Pard6g, Zfp508, LOC665009, LOC100039311, 1110032A13Rik, Txnl4, 1810005K13Rik, Pqlc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123E22.bB6Ng01-123E22.g
ACCDH926507DH926508
length2381,048
definitionDH926507|Mus musculus domesticus DNA, BAC clone: B6Ng01-123E22, 5' end.DH926508|Mus musculus domesticus DNA, BAC clone: B6Ng01-123E22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,462,001 - 79,462,238)(79,292,546 - 79,293,606)
sequence
gaattctataggcatctaggacagaggacaagagggagatcactggacat
gtcagtatgctgctgagacaggttgacttctatggaaatgcaaatatgta
agtaattttcccagtcagtaagctaatccaatgatatggccttgccaggc
ctttcccacagcaccaaacatttctctagttattagacaacttcatgccc
aggggaatgctagggtggtgagggtgagtgggagtggg
gaattcacttttatcttcagtcattgaatacgcttgcatacagagagaga
gagagagagagagagagagagagagagagagagagagagaaacagagaca
gacagatagcagagggtcttctcaatcccttgtatattttatcatcaaaa
cacttgacaaactgcttcaacatttcaatattgtctaccttatctacagg
actgcagtctctctaatgcaggaagagtgttttgaacaggccgctgcaca
tttcagagcacagtgaacataaggaaaacttgtccaataggaggtgttcc
aaagccacacttctccttgaatagaagagtggacaaagcgggaactgggg
gtcagaggctcaggccacttagccgcttccccattaggagctgtattcgg
tgaggcatttttaagccattcaagtctcatttgaaaagtgggtaataatc
ctacctcaggggcttctagaagaagtaattgaagattaaatattaaatga
gatcataattacctgggatcaccttagtaaatgctcacattttttgttaa
acttgacttggtcccctggaatgtgtcagccaagttataaattggctaag
tgttgcctttctcttctcagatgctgagaaaagccctgtggcccaggggt
tagaacccagccttctccacactcacacataatagaaaacacacccagct
agctgagattaacatgctaacttgggcgttctgctgttgtttcttgacga
cttgtctagtagaggaaatatcactgggttcaatcagaagttcccccatc
ttcggtgaatgggtaagagaggccatgaagtgagccccttacccgctgcc
agcctggcattgctacgtactgaacctatatgcttagaaacagaagtctt
aaagggtggactggtgtttccgtgctcattggctctgttcgttctcagct
ctggctaagtgggacgagatgagcccagatgtgagctaggactcagttct
tgtggctcctggactcataatgggacaaatctgcatctgggcttggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_79462001_79462238
seq2: B6Ng01-123E22.b_38_275 (reverse)

seq1  CCCACTCCCACTCACCCTCACCACCCTAGCATTCCCCTGGGCATGAAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCCCACTCACCCTCACCACCCTAGCATTCCCCTGGGCATGAAGTT  50

seq1  GTCTAATAACTAGAGAAATGTTTGGTGCTGTGGGAAAGGCCTGGCAAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAATAACTAGAGAAATGTTTGGTGCTGTGGGAAAGGCCTGGCAAGGC  100

seq1  CATATCATTGGATTAGCTTACTGACTGGGAAAATTACTTACATATTTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCATTGGATTAGCTTACTGACTGGGAAAATTACTTACATATTTGCA  150

seq1  TTTCCATAGAAGTCAACCTGTCTCAGCAGCATACTGACATGTCCAGTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATAGAAGTCAACCTGTCTCAGCAGCATACTGACATGTCCAGTGAT  200

seq1  CTCCCTCTTGTCCTCTGTCCTAGATGCCTATAGAATTC  238
      ||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCTTGTCCTCTGTCCTAGATGCCTATAGAATTC  238

seq1: chr18_79292546_79293606
seq2: B6Ng01-123E22.g_66_1113

seq1  GAATTCACTTTTATCTTCAGTCATTGAATACGCTTGCATACAGAGAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTTATCTTCAGTCATTGAATACGCTTGCATACAGAGAGAGA  50

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACAGAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACAGAGACA  100

seq1  GACAGATAGCAGAGGGTCTTCTCAATCCCTTGTATATTTTATCATCAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATAGCAGAGGGTCTTCTCAATCCCTTGTATATTTTATCATCAAAA  150

seq1  CACTTGACAAACTGCTTCAACATTTCAATATTGTCTACCTTATCTACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGACAAACTGCTTCAACATTTCAATATTGTCTACCTTATCTACAGG  200

seq1  ACTGCAGTCTCTCTAATGCAGGAAGAGTGTTTTGAACAGGCCGCTGCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGTCTCTCTAATGCAGGAAGAGTGTTTTGAACAGGCCGCTGCACA  250

seq1  TTTCAGAGCACAGTGAACATAAGGAAAACTTGTCCAATAGGAGGTGTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAGCACAGTGAACATAAGGAAAACTTGTCCAATAGGAGGTGTTCC  300

seq1  AAAGCCACACTTCTCCTTGAATAGAAGAGTGGACAAAGCGGGAACTGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCACACTTCTCCTTGAATAGAAGAGTGGACAAAGCGGGAACTGGGG  350

seq1  GTCAGAGGCTCAGGCCACTTAGCCGCTTCCCCATTAGGAGCTGTATTCGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGGCTCAGGCCACTTAGCCGCTTCCCCATTAGGAGCTGTATTCGG  400

seq1  TGAGGCATTTTTAAGCCATTCAAGTCTCATTTGAAAAGTGGGTAATAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCATTTTTAAGCCATTCAAGTCTCATTTGAAAAGTGGGTAATAATC  450

seq1  CTACCTCAGGGGCTTCTAGAAGAAGTAATTGAAGATTAAATATTAAATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTCAGGGGCTTCTAGAAGAAGTAATTGAAGATTAAATATTAAATGA  500

seq1  GATCATAATTACCTGGGATCACCTTAGTAAATGCTCACATTTTTTGTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATAATTACCTGGGATCACCTTAGTAAATGCTCACATTTTTTGTTAA  550

seq1  ACTTGACTTGGTCCCCTGGAATGTGTCAGCCAAGTTATAAATTGGCTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGACTTGGTCCCCTGGAATGTGTCAGCCAAGTTATAAATTGGCTAAG  600

seq1  TGTTGCC-TTCTCTTCTCAGATGCTGAGAAAAGCCCTGTGGCCCAGGGGT  649
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCTTTCTCTTCTCAGATGCTGAGAAAAGCCCTGTGGCCCAGGGGT  650

seq1  TAGAACCCAGCCTTCTCCACACTCACACATAATAGAAAACACACCCAGCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACCCAGCCTTCTCCACACTCACACATAATAGAAAACACACCCAGCT  700

seq1  AGCTGAGATTAACATGCTAACTTGGGCGTTCTGCTGTTGTTTCTTGACGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGATTAACATGCTAACTTGGGCGTTCTGCTGTTGTTTCTTGACGA  750

seq1  CTTGTCTAGTAGAGGAAATATCACTGGGTTCAATCAGAAAGTTCCCCCAT  799
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTTGTCTAGTAGAGGAAATATCACTGGGTTCAATCAG-AAGTTCCCCCAT  799

seq1  CTTCGGTGAATGGGTAAGGAGAGGCCATGAAGTGAGCCCCTTACCCGCTG  849
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTTCGGTGAATGGGTAA-GAGAGGCCATGAAGTGAGCCCCTTACCCGCTG  848

seq1  CCAGCCTGGCATTGCTACGTACTGAACCCTATATGCTTAGAAACCAGAAG  899
      |||||||||||||||||||||||||| |||||||||||||||| ||||| 
seq2  CCAGCCTGGCATTGCTACGTACTGAA-CCTATATGCTTAGAAA-CAGAA-  895

seq1  GTCTTAAAAGGTGGGACTGGTGTTTTCCGTTGCTTCATTGGCTCCTGTTC  949
      |||||||| ||| ||||||||| |||||| ||| ||||||||| ||||||
seq2  GTCTTAAAGGGT-GGACTGGTG-TTTCCG-TGC-TCATTGGCT-CTGTTC  940

seq1  GTTCTCCAGCTCTGGCTAAGTGGGACGAGATGAGCCCAGATGTGAGCCTA  999
      ||||| |||||||||||||||||||||||||||||||||||||||| |||
seq2  GTTCT-CAGCTCTGGCTAAGTGGGACGAGATGAGCCCAGATGTGAG-CTA  988

seq1  GGACCTCAGTTCTTGT-GCTCTGGAACTCAATAATGGGACAAATCTGCAT  1048
      ||| |||||||||||| ||||  | |||| ||||||||||||||||||||
seq2  GGA-CTCAGTTCTTGTGGCTCCTGGACTC-ATAATGGGACAAATCTGCAT  1036

seq1  CATGGGCTTGGAG  1061
      | |||||||||||
seq2  C-TGGGCTTGGAG  1048