BAC Information

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BAC

Clone NameB6Ng01-124M18
Chromosome18 (Build37)
Map Location 49,618,598 - 49,734,228
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC545470
Downstream geneDtwd2, Dmxl1, Tnfaip8, Hsd17b4, LOC626721, LOC667233, Gm93, Hdhd1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124M18.bB6Ng01-124M18.g
ACCDH927608DH927609
length1,107708
definitionDH927608|Mus musculus domesticus DNA, BAC clone: B6Ng01-124M18, 5' end.DH927609|Mus musculus domesticus DNA, BAC clone: B6Ng01-124M18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,618,598 - 49,619,704)(49,733,521 - 49,734,228)
sequence
gaattcactctatagatcatgttggctacgaattcaaagatctgcctgcc
tctgccttctgagtactggaattaaaggtgtgtgtcaccaccacccagct
tgtcaatattttcaccttccatttatggaattgctaaaaaaaaaaaaaaa
tgaggctggattctccaaaacatggcaatattatataaatatataatttg
tctcacttgctaattcttgaaatatttacattattttcatttaatattca
ttaagttattaaatattacctagagtcctcatcattatcaccatcaatca
tcatctgtaatactgaagattgaacccaggttcttgtgcatgctagacag
gcacactaccagtgagctacatcttccatcacaaattaatatgtttttca
aagtaaatccccttaaatataaataatctattttatttccaaatacttaa
tgtcattatctttcgattacaagagacccagagtacagaaaagaccaaag
tccttaaaacaattacctttcttagcatgaaagcaacaaaacttttatca
ttagagacattccagaataaattcacagtagcagagatatttatagcttt
tcaataaaggtgcatcatcaggaagacagagcataaataagagcaaagaa
cactcttacacttgctctcagaatttttcccgaagtgtccagtacctcac
actctccaactaccttctatattaaaatagtatatcacacctgccaagaa
accaaggaaaaagcaggaggtcactggagagctttgctgttgtgtaatca
tctgcctaggagcagggttagcaaaagaggaagccctgcacctggggcag
acagaggagctcgtcacagtggttccagcatgtgcacctgtcacaagagt
gacatgtagagatgccatgcctacccaggaaacgagaaaagagctggtaa
gctaagcttgtcacttgaatcacaagagactccagatggtcttcaagtac
tcagggctttgtaattcttcttcatgttctaatcttaaagcttcttttaa
tttaagacaactggtcctggaatgtaaattgagctcattttaaagctaac
ttcatga
gaattctttttgtttagtcatttgacaaacctgagaaccaaggccatatt
taactgtgttaagcatagttaacacattttaaataattgttttagaatct
ctttgctggctctcttttcctggaaactccatgtactattggttgttgaa
tttgtcactgagtattattttcatataaatgtgaatatgcatacacacac
acagacacacacacacacatacacacacacacacacacgtagtacgtatg
ttttaagtggctatgggtttttttttttttggcaagtttgccttaaacct
tgaatctgttgttgcttgtctggtctacaaagagaccttgataattgaca
gttgtattccagacctgagaggactcacagagctatgattataggtgcct
tctagctgtcactttgatttcggtgggattgtacttcaatgctttgccta
ggagcactaagagagagacagttttcctttgcaggttccctttagaaaaa
cttcaccaatatggggtcggggggagaagacaccagctatcttttcatct
ggaattaatgtgatcgtcagtgtctgaagaagggagaggagggctggttt
cggtttcagtgaaatccagactttcaaagccgttgagctgttgatcctgt
tcctttctgtcccctaccactttcctccaatatcgtgtctgcatcaaagc
tacatccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_49618598_49619704
seq2: B6Ng01-124M18.b_46_1152

seq1  GAATTCACTCTATAGATCATGTTGGCTACGAATTCAAAGATCTGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTATAGATCATGTTGGCTACGAATTCAAAGATCTGCCTGCC  50

seq1  TCTGCCTTCTGAGTACTGGAATTAAAGGTGTGTGTCACCACCACCCAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTTCTGAGTACTGGAATTAAAGGTGTGTGTCACCACCACCCAGCT  100

seq1  TGTCAATATTTTCACCTTCCATTTATGGAATTGCTAAAAAAAAAAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATATTTTCACCTTCCATTTATGGAATTGCTAAAAAAAAAAAAAAA  150

seq1  TGAGGCTGGATTCTCCAAAACATGGCAATATTATATAAATATATAATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTGGATTCTCCAAAACATGGCAATATTATATAAATATATAATTTG  200

seq1  TCTCACTTGCTAATTCTTGAAATATTTACATTATTTTCATTTAATATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTTGCTAATTCTTGAAATATTTACATTATTTTCATTTAATATTCA  250

seq1  TTAAGTTATTAAATATTACCTAGAGTCCTCATCATTATCACCATCAATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTATTAAATATTACCTAGAGTCCTCATCATTATCACCATCAATCA  300

seq1  TCATCTGTAATACTGAAGATTGAACCCAGGTTCTTGTGCATGCTAGACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGTAATACTGAAGATTGAACCCAGGTTCTTGTGCATGCTAGACAG  350

seq1  GCACACTACCAGTGAGCTACATCTTCCATCACAAATTAATATGTTTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTACCAGTGAGCTACATCTTCCATCACAAATTAATATGTTTTTCA  400

seq1  AAGTAAATCCCCTTAAATATAAATAATCTATTTTATTTCCAAATACTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAATCCCCTTAAATATAAATAATCTATTTTATTTCCAAATACTTAA  450

seq1  TGTCATTATCTTTCGATTACAAGAGACCCAGAGTACAGAAAAGACCAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTATCTTTCGATTACAAGAGACCCAGAGTACAGAAAAGACCAAAG  500

seq1  TCCTTAAAACAATTACCTTTCTTAGCATGAAAGCAACAAAACTTTTATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAAAACAATTACCTTTCTTAGCATGAAAGCAACAAAACTTTTATCA  550

seq1  TTAGAGACATTCCAGAATAAATTCACAGTAGCAGAGATATTTATAGCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGACATTCCAGAATAAATTCACAGTAGCAGAGATATTTATAGCTTT  600

seq1  TCAATAAAGGTGCATCATCAGGAAGACAGAGCATAAATAAGAGCAAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAAGGTGCATCATCAGGAAGACAGAGCATAAATAAGAGCAAAGAA  650

seq1  CACTCTTACACTTGCTCTCAGAATTTTTCCCGAAGTGTCCAGTACCTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTACACTTGCTCTCAGAATTTTTCCCGAAGTGTCCAGTACCTCAC  700

seq1  ACTCTCCAACTACCTTCTATATTAAAATAGTATATCACACCTGCCAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCCAACTACCTTCTATATTAAAATAGTATATCACACCTGCCAAGAA  750

seq1  ACCAAGGAAAAAGCAGGAGGTCACTGGAGAGCTTTGCTGTTGTGTAATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGGAAAAAGCAGGAGGTCACTGGAGAGCTTTGCTGTTGTGTAATCA  800

seq1  TCTGCCTAGGAGCAGGGTTAGC-AAAGAGGAAGCCCTGCACCTGGGGCAG  849
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCTGCCTAGGAGCAGGGTTAGCAAAAGAGGAAGCCCTGCACCTGGGGCAG  850

seq1  ACAGA-GAGCTCGTCACAGTGG-TCCAGCATGTGCACCTGTCACAAGAGT  897
      ||||| |||||||||||||||| |||||||||||||||||||||||||||
seq2  ACAGAGGAGCTCGTCACAGTGGTTCCAGCATGTGCACCTGTCACAAGAGT  900

seq1  GACATGTAGAGATGCCATGCCTACCCAGGAAACGAGAAAAGAGCTGGTAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGTAGAGATGCCATGCCTACCCAGGAAACGAGAAAAGAGCTGGTAA  950

seq1  GGCTAAGCTTGCCAC-TGAATCACAAGAGAACCCCAGATGGTCTTCAGGT  996
       |||||||||| ||| ||||||||||||| || |||||||||||||| ||
seq2  -GCTAAGCTTGTCACTTGAATCACAAGAG-ACTCCAGATGGTCTTCAAGT  998

seq1  AACTCAGGGCTTTGTAATTCCTCTTCATGTTCTAATCTAAAGGCTTCTTT  1046
       ||||||||||||||||||| ||||||||||||||||| || ||||||||
seq2  -ACTCAGGGCTTTGTAATTCTTCTTCATGTTCTAATCTTAAAGCTTCTTT  1047

seq1  TTAATTTAGACAACTGGT-CTTGAATGTAAATTGAGCTCATTTTAAAAGC  1095
      | | || ||||||||||| || |||||||||||||||||||||| |||||
seq2  TAATTTAAGACAACTGGTCCTGGAATGTAAATTGAGCTCATTTT-AAAGC  1096

seq1  TAACTTTCATGA  1107
      |||| |||||||
seq2  TAAC-TTCATGA  1107

seq1: chr18_49733521_49734228
seq2: B6Ng01-124M18.g_70_777 (reverse)

seq1  GGGATGTAGCTTTGATGCAGACACGATATTGGAGGAAAGTGGTAGGGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGTAGCTTTGATGCAGACACGATATTGGAGGAAAGTGGTAGGGGAC  50

seq1  AGAAAGGAACAGGATCAACAGCTCAACGGCTTTGAAAGTCTGGATTTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGAACAGGATCAACAGCTCAACGGCTTTGAAAGTCTGGATTTCAC  100

seq1  TGAAACCGAAACCAGCCCTCCTCTCCCTTCTTCAGACACTGACGATCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCGAAACCAGCCCTCCTCTCCCTTCTTCAGACACTGACGATCACA  150

seq1  TTAATTCCAGATGAAAAGATAGCTGGTGTCTTCTCCCCCCGACCCCATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCCAGATGAAAAGATAGCTGGTGTCTTCTCCCCCCGACCCCATAT  200

seq1  TGGTGAAGTTTTTCTAAAGGGAACCTGCAAAGGAAAACTGTCTCTCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAGTTTTTCTAAAGGGAACCTGCAAAGGAAAACTGTCTCTCTCTT  250

seq1  AGTGCTCCTAGGCAAAGCATTGAAGTACAATCCCACCGAAATCAAAGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCCTAGGCAAAGCATTGAAGTACAATCCCACCGAAATCAAAGTGA  300

seq1  CAGCTAGAAGGCACCTATAATCATAGCTCTGTGAGTCCTCTCAGGTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAGAAGGCACCTATAATCATAGCTCTGTGAGTCCTCTCAGGTCTGG  350

seq1  AATACAACTGTCAATTATCAAGGTCTCTTTGTAGACCAGACAAGCAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAACTGTCAATTATCAAGGTCTCTTTGTAGACCAGACAAGCAACAA  400

seq1  CAGATTCAAGGTTTAAGGCAAACTTGCCAAAAAAAAAAAAACCCATAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCAAGGTTTAAGGCAAACTTGCCAAAAAAAAAAAAACCCATAGCC  450

seq1  ACTTAAAACATACGTACTACGTGTGTGTGTGTGTGTGTATGTGTGTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAACATACGTACTACGTGTGTGTGTGTGTGTGTATGTGTGTGTGT  500

seq1  GTGTCTGTGTGTGTGTATGCATATTCACATTTATATGAAAATAATACTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGTGTGTGTGTATGCATATTCACATTTATATGAAAATAATACTCA  550

seq1  GTGACAAATTCAACAACCAATAGTACATGGAGTTTCCAGGAAAAGAGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAAATTCAACAACCAATAGTACATGGAGTTTCCAGGAAAAGAGAGC  600

seq1  CAGCAAAGAGATTCTAAAACAATTATTTAAAATGTGTTAACTATGCTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAGAGATTCTAAAACAATTATTTAAAATGTGTTAACTATGCTTAA  650

seq1  CACAGTTAAATATGGCCTTGGTTCTCAGGTTTGTCAAATGACTAAACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTAAATATGGCCTTGGTTCTCAGGTTTGTCAAATGACTAAACAAA  700

seq1  AAGAATTC  708
      ||||||||
seq2  AAGAATTC  708