BAC Information

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BAC

Clone NameB6Ng01-125P02
Chromosome18 (Build37)
Map Location 50,400,990 - 50,606,661
singlet/doubletdoublet
Overlap geneGm93
Upstream geneDtwd2, Dmxl1, Tnfaip8, Hsd17b4, LOC626721, LOC667233
Downstream geneHdhd1a, LOC100042373, LOC100042385, Prr16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125P02.bB6Ng01-125P02.g
ACCDH928438DH928439
length1,1471,119
definitionDH928438|Mus musculus domesticus DNA, BAC clone: B6Ng01-125P02, 5' end.DH928439|Mus musculus domesticus DNA, BAC clone: B6Ng01-125P02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,605,499 - 50,606,661)(50,400,990 - 50,402,142)
sequence
gaattccatagccagtttaatatactcaattagtttaagcaatataaaat
tggggatgagtgaaattttcttataaaatgctcgtttgtctcaaaaaaaa
acccataaaatttacttttaaatagacagacagttatctcaacattgtgt
aaataatagcccatatttgaaagaaagcagttgggctggaactcctaccg
tgggcctatcatccagcactgtagaagttaaggcaaaaagatggtatcac
attcaaggtcagtctggactacatgaagagaatcatcttcaaacaatgca
aaaatcattataataaaaaaaatcccacctaaactttactatgaacttta
tatagcattgataaacctctgggcttctttgagaactgcagttttgtcaa
gtgggcacagtcactcctaacacacaaaaatactttatggttaaattatg
ataacttctaccagtaactatgaaaatattgaacatcagaaagaactagt
aagatccaaaattatttgtatgaaaaggaaaagttaactcctttctagac
taggtctaaacaagtaatttttccttcatctaacagaagccgggtgcagg
atctgttctttgtcaacatcaggattggaagcatcccagggacttttgtt
ctcttcaaagtcacaagtcaggagccctgacttttctcaccaagtctgag
ttccaaggataaagaagagtgattcaccctgatccctttgatcaagataa
tagacttcttacaggcccctggtgactcatatttaggcatctcagccaga
acagtgtcctgtgacttgtctcagctgctctggaggttgcaaagggagag
ctgaattctcaaactctccgctttaggtaaaacatggaagcagatgctta
agggttagaattgaataaaatctggagtctaccacacaggcaaagttata
gaagtcgaagcaagatgaacacatgagcttcagagagtcttggtcagatt
ctcttttgccctgtgccctgaatgatcttcttagatcactgtctccttat
taagggatagtcattatcatctttcaagaatctgcaagacatataataca
caattgttatgagtatttcccaggtgacgagttgataatactagcag
gaattccaggaccgccagggatatacagagaaaccctgtctcgaaaaaca
aaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaaaagacta
ctttgcaaacccacaaccatgttggacttagtgagcatacaggcagtata
taatattatgctattacattaactaatagaaaaaaaatcccaatctatct
acttattttaagtatcctcatatgaactgcaattactaaagacaaaagaa
tccgttcgctccttttttgcttggttttaacattgatgttctcatcaacc
atcttgtaccaagggaagacattaaagtatggccatcattccatcattgt
gcctctaagaggaaacacgaaattaactaaccaaatactaccagtatatt
tattgtacaatctatgtttgaatgtggttattttagggtgtttaaattgt
ggcatctgtctggcttaagcaaataaacaaaagctaaggatgctatgaaa
taagaccatttacaaggtccattaccttttgactttgagtaattgcctaa
ttacctcatgttccaagctaattcatggaattacatctaataatgcctta
catttgtctagtgttcagaggtttacaaggtgctttcatttgcaggactt
gttcaatcaatcaaccagtcaattaacaaatcagtcctttgatagaaatt
gcttcaaaaccatagcggccaaacatcagtatgtttgatttgggtcttct
taaggtaaataccacaagtgccttttcttcaagctttaagtctagttaaa
gaagaaggaaatattgagaaataagtgggctaaatgtttggctgaacatg
ttggggtgggctcaaagtggaatttagtggctgtctcactggggggatgg
ccatatggatagaaacggagcactgagtgaagtctacttgatctgctagg
gtttgttgtcaggctgatggtatagaggagcctgattcacagtgtttacc
atcgcatggagtctctaggttcaaagtactcccctcctccaagcaatcct
ctcacccatctcccaccataaggtcctgaatgggtaccgttcacctgaat
gagagtgaatgagaagtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_50605499_50606661
seq2: B6Ng01-125P02.b_47_1193 (reverse)

seq1  CTGCTAAATTATTATTCAACTCGTCACCTGGAAAATAACTCATTAACAA-  49
      |||||  | ||||| |||||||||||||||| |||| ||||| |||||| 
seq2  CTGCT--AGTATTA-TCAACTCGTCACCTGGGAAAT-ACTCA-TAACAAT  45

seq1  TGTGTATTATA-GTCTTTGCAGCATCTTTGGAAGATGATTATGACTAATC  98
      ||||||||||| ||| |||||| ||  ||| |||||||| |||||| |||
seq2  TGTGTATTATATGTC-TTGCAG-ATTCTTGAAAGATGATAATGACT-ATC  92

seq1  CCTTAATAAAGGAAGAACAGTGATACTAAGAAGATCATTCAAGGGCACCA  148
      ||||||| |||||   |||||||| ||||||||||||||| |||||| ||
seq2  CCTTAAT-AAGGA--GACAGTGAT-CTAAGAAGATCATTC-AGGGCA-CA  136

seq1  GGGCAAAAAGAGAAATCTGACCAAGACTCTCTGAAGCTCATGTGTTCATC  198
      |||| ||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGGC-AAAAGAG-AATCTGACCAAGACTCTCTGAAGCTCATGTGTTCATC  184

seq1  TTGCCTTCGACTTCTATAACTTTGCCTGTGTGGTAGACTCCAGATTTTAT  248
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTG-CTTCGACTTCTATAACTTTGCCTGTGTGGTAGACTCCAGATTTTAT  233

seq1  TCAATTCTAACCCTTAAGCATCTGCTTCCATGTTTTACCTAAAGCGGAGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCTAACCCTTAAGCATCTGCTTCCATGTTTTACCTAAAGCGGAGA  283

seq1  GTTTGAGAATTCAGCTCTCCCTTTGCAACCTCCAGAGCAGCTGAGACAAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGAATTCAGCTCTCCCTTTGCAACCTCCAGAGCAGCTGAGACAAG  333

seq1  TCACAGGACACTGTTCTGGCCTGAGATGCCTAAATATGAGTCACCAGGGG  398
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCACAGGACACTGTTCTGG-CTGAGATGCCTAAATATGAGTCACCAGGGG  382

seq1  CCTGTAAGAAGTCTATTATCTTGATCAAAGGGATCAGGGTGAATCACTCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAAGAAGTCTATTATCTTGATCAAAGGGATCAGGGTGAATCACTCT  432

seq1  TCTTTATCCTTGGAACTCAGACTTGGTGAGAAAAGTCAGGGCTCCTGACT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATCCTTGGAACTCAGACTTGGTGAGAAAAGTCAGGGCTCCTGACT  482

seq1  TGTGACTTTGAAGAGAACAAAAGTCCCTGGGATGCTTCCAATCCTGATGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTTTGAAGAGAACAAAAGTCCCTGGGATGCTTCCAATCCTGATGT  532

seq1  TGACAAAGAACAGATCCTGCACCCGGCTTCTGTTAGATGAAGGAAAAATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAAGAACAGATCCTGCACCCGGCTTCTGTTAGATGAAGGAAAAATT  582

seq1  ACTTGTTTAGACCTAGTCTAGAAAGGAGTTAACTTTTCCTTTTCATACAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTTAGACCTAGTCTAGAAAGGAGTTAACTTTTCCTTTTCATACAA  632

seq1  ATAATTTTGGATCTTACTAGTTCTTTCTGATGTTCAATATTTTCATAGTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTGGATCTTACTAGTTCTTTCTGATGTTCAATATTTTCATAGTT  682

seq1  ACTGGTAGAAGTTATCATAATTTAACCATAAAGTATTTTTGTGTGTTAGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTAGAAGTTATCATAATTTAACCATAAAGTATTTTTGTGTGTTAGG  732

seq1  AGTGACTGTGCCCACTTGACAAAACTGCAGTTCTCAAAGAAGCCCAGAGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTGTGCCCACTTGACAAAACTGCAGTTCTCAAAGAAGCCCAGAGG  782

seq1  TTTATCAATGCTATATAAAGTTCATAGTAAAGTTTAGGTGGGATTTTTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCAATGCTATATAAAGTTCATAGTAAAGTTTAGGTGGGATTTTTTT  832

seq1  TATTATAATGATTTTTGCATTGTTTGAAGATGATTCTCTTCATGTAGTCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAATGATTTTTGCATTGTTTGAAGATGATTCTCTTCATGTAGTCC  882

seq1  AGACTGACCTTGAATGTGATACCATCTTTTTGCCTTAACTTCTACAGTGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGACCTTGAATGTGATACCATCTTTTTGCCTTAACTTCTACAGTGC  932

seq1  TGGATGATAGGCCCACGGTAGGAGTTCCAGCCCAACTGCTTTCTTTCAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGATAGGCCCACGGTAGGAGTTCCAGCCCAACTGCTTTCTTTCAAA  982

seq1  TATGGGCTATTATTTACACAATGTTGAGATAACTGTCTGTCTATTTAAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGCTATTATTTACACAATGTTGAGATAACTGTCTGTCTATTTAAAA  1032

seq1  GTAAATTTTATGGGTTTTTTTTTGAGACAAACGAGCATTTTATAAGAAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTTTATGGGTTTTTTTTTGAGACAAACGAGCATTTTATAAGAAAA  1082

seq1  TTTCACTCATCCCCAATTTTATATTGCTTAAACTAATTGAGTATATTAAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTCATCCCCAATTTTATATTGCTTAAACTAATTGAGTATATTAAA  1132

seq1  CTGGCTATGGAATTC  1163
      |||||||||||||||
seq2  CTGGCTATGGAATTC  1147

seq1: chr18_50400990_50402142
seq2: B6Ng01-125P02.g_69_1187

seq1  GAATTCCAGGACCGCCAGGGATATACAGAGAAACCCTGTCTCGAAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACCGCCAGGGATATACAGAGAAACCCTGTCTCGAAAAACA  50

seq1  AAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAAAAGACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAAAAGACTA  100

seq1  CTTTGCAAACCCACAACCATGTTGGACTTAGTGAGCATACAGGCAGTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCAAACCCACAACCATGTTGGACTTAGTGAGCATACAGGCAGTATA  150

seq1  TAATATTATGCTATTACATTAACTAATAGAAAAAAAATCCCAATCTATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTATGCTATTACATTAACTAATAGAAAAAAAATCCCAATCTATCT  200

seq1  ACTTATTTTAAGTATCCTCATATGAACTGCAATTACTAAAGACAAAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTTTAAGTATCCTCATATGAACTGCAATTACTAAAGACAAAAGAA  250

seq1  TCCGTTCGCTCCTTTTTTGCTTGGTTTTAACATTGATGTTCTCATCAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTTCGCTCCTTTTTTGCTTGGTTTTAACATTGATGTTCTCATCAACC  300

seq1  ATCTTGTACCAAGGGAAGACATTAAAGTATGGCCATCATTCCATCATTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTACCAAGGGAAGACATTAAAGTATGGCCATCATTCCATCATTGT  350

seq1  GCCTCTAAGAGGAAACACGAAATTAACTAACCAAATACTACCAGTATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTAAGAGGAAACACGAAATTAACTAACCAAATACTACCAGTATATT  400

seq1  TATTGTACAATCTATGTTTGAATGTGGTTATTTTAGGGTGTTTAAATTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTACAATCTATGTTTGAATGTGGTTATTTTAGGGTGTTTAAATTGT  450

seq1  GGCATCTGTCTGGCTTAAGCAAATAAACAAAAGCTAAGGATGCTATGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCTGTCTGGCTTAAGCAAATAAACAAAAGCTAAGGATGCTATGAAA  500

seq1  TAAGACCATTTACAAGGTCCATTACCTTTTGACTTTGAGTAATTGCCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACCATTTACAAGGTCCATTACCTTTTGACTTTGAGTAATTGCCTAA  550

seq1  TTACCTCATGTTCCAAGCTAATTCATGGAATTACATCTAATAATGCCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTCATGTTCCAAGCTAATTCATGGAATTACATCTAATAATGCCTTA  600

seq1  CATTTGTCTAGTGTTCAGAGGTTTACAAGGTGCTTTCATTTGCAGGACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTCTAGTGTTCAGAGGTTTACAAGGTGCTTTCATTTGCAGGACTT  650

seq1  GTTCAATCAATCAACCAGTCAATTAACAAATCAGTCCTTTGATAGAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATCAATCAACCAGTCAATTAACAAATCAGTCCTTTGATAGAAATT  700

seq1  GCTTCAAAACCATAGCAGGCCAAACATCAGTATGTTTGATTTGGGTCTTC  750
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GCTTCAAAACCATAGC-GGCCAAACATCAGTATGTTTGATTTGGGTCTTC  749

seq1  TTAAGGTAAATACCACAAGTGCCTTTTCTTCAAAGCTTTAAGTCTAGTTA  800
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTAAGGTAAATACCACAAGTGCCTTTTCTTC-AAGCTTTAAGTCTAGTTA  798

seq1  AAGAAGAAGGAAATATTGAGAAATAAGTGGGCTAAAATGTTGGCTGAACA  850
      ||||||||||||||||||||||||||||||||||||   |||||||||||
seq2  AAGAAGAAGGAAATATTGAGAAATAAGTGGGCTAAATGTTTGGCTGAACA  848

seq1  TGTT-GGGTGGGCTCAAAGTGGAAATTAGTGGCTGTTCTCACTGGGGGGA  899
      |||| ||||||||||||||||||| |||||||||| ||||||||||||||
seq2  TGTTGGGGTGGGCTCAAAGTGGAATTTAGTGGCTG-TCTCACTGGGGGGA  897

seq1  TGGCCATATGGATAGAAAAGGAGGCAACTGAGTGAAGTCTTACTTGATTC  949
      |||||||||||||||||| ||||   ||||||||||||| ||||||||  
seq2  TGGCCATATGGATAGAAACGGAG--CACTGAGTGAAGTC-TACTTGAT--  942

seq1  TTGCTAGGGTTTTGGTTGTCCAGGCTGATGGTATAGAGGAGCCTGATTCA  999
       |||||||||||  ||||| ||||||||||||||||||||||||||||||
seq2  CTGCTAGGGTTT--GTTGT-CAGGCTGATGGTATAGAGGAGCCTGATTCA  989

seq1  CAGTGTTTACACATCGTCATGGAGGTCTTCCTAGGGTTTCAAAGGTACTC  1049
      |||||||||| ||||| |||||| ||||  |||||  |||||| ||||||
seq2  CAGTGTTTAC-CATCG-CATGGA-GTCT--CTAGG--TTCAAA-GTACTC  1031

seq1  TCCTCCTCCACAGCATTTCCTCCTCACCCCATCCTCCCCACCCCATAAAG  1099
       ||||||||| ||||  |||| |||| ||||| ||||   | |||| |||
seq2  CCCTCCTCCA-AGCA-ATCCT-CTCA-CCCAT-CTCC---CACCAT-AAG  1072

seq1  TTCCTGGAATGTGAATCATGTTCTAGCTGAGATGAGAGTGAAAATGAGAA  1149
       |||| ||||| | | |  |||| | |||| |||||||||  ||||||||
seq2  GTCCT-GAATGGGTACC--GTTC-ACCTGA-ATGAGAGTG--AATGAGAA  1115

seq1  GTCT  1153
      ||||
seq2  GTCT  1119