BAC Information

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BAC

Clone NameB6Ng01-126M03
Chromosome18 (Build37)
Map Location 78,985,803 - 79,142,006
singlet/doubletdoublet
Overlap geneSetbp1
Upstream geneCcdc5, Atp5a1, Pstpip2, 5430411K18Rik, Cd33l3, Slc14a1, Slc14a2, EG620155
Downstream geneLOC100039242, LOC100039250, LOC383311, LOC433204
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126M03.bB6Ng01-126M03.g
ACCDH929044DH929045
length1,2581,053
definitionDH929044|Mus musculus domesticus DNA, BAC clone: B6Ng01-126M03, 5' end.DH929045|Mus musculus domesticus DNA, BAC clone: B6Ng01-126M03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,140,735 - 79,142,006)(78,985,803 - 78,986,865)
sequence
gaattcccacagaggcatccagatgttctgtttgatgcccttcagtagtt
ggtctctggtgtttcagagacgaacttccctgatggtttgcaccaagcac
tgagttttggaggaagactgcttctgggtgtctccatggcaccaggctcc
catgtctacatactcagaactgttgcgatcacagtggtctctgccccatt
gctctggggatcccttccacgtagggttggctcattgctctcttcagtgc
ctgttccaggcaccgccagcccacacaagtgctgttttctgatactgaaa
ttctccagtgagcccagctctaattaattaccatggattccacactcaag
gggaaaacctgcttgtgagggcaaacatggagtaattcattcaggagcct
cagactataagactatggttgggagcagtgcttctgcctgaggtagggaa
gggcacgttcaggtcccacttcttgcaaggctgaactgtccctagagcct
agcagagagtaagcctggacactaaccctccaaaaagaaatcagggcctt
tcatgatcaaggtttatagaaactgcactcacacccgctgcctagagatg
aacccttagtaagctgcaagtcgccacctcgactctcaggaaatccaagt
ggtgacttagggtggactgttgtcattgtccacgtgggctggtctttctt
ctcaatcacatgttgaagtttcaaaaaccaaggctccaacgttatcaact
tatcaaaatgtattatcactataacattattttaaagtattatttagata
ggattatttactttaaagtagttttattagttatttgagcatttcataca
atgtttttggtcacattcatctgcccttttctaatcccaccccacaccac
taatccctaccttggtacctacccaggttcatattcttgctctctctctc
tctctctctcttggtctctctgagtctctgtctctctgtctctctcacta
tctgtctctgtctctctctctctgtgtgggtgtgtatgtgtcactcctcg
ctttctcagtctatcattcctctctcaacccactggagtctaaattttaa
tcaaattatcatgaatacggagcctggccctcgaacggtaatctacaagg
ttcaccgcctacgaatgctgaatttgctggcttgagccttggccagtatt
gagtactgcaattgctgagtcctcatatgtctcgtggcccatcctcaaaa
tcatcccc
gaattcagtaactaagagtggagagacagccagatagaacaagaaagtga
taaaaacaagaggaaacccagcaattctttctgtaaccgagagaagaagt
gttatataaagcaaatacagggtgatgtattgggaaaggcagcagtgcaa
aggaagggcagtgtccatctacagtcaggtagacttagtgtttcttttcc
aatctactgtttcaccgtgcaaacttctgaccataggatctaatcttgat
atgtaatatgtctttatttctctgccaattcttctagatatccatgaaat
gctaatagtcagaaaccatgcatttcttttggttccttacaagttagttt
gatagatatgagatacttgaaaaggtttgtggagtggatgactatataga
atcaacacccctatcttcaagactcaggtattggtcattgttttcatgaa
ctaagccacacattcttaatatctagaattcattttttggtataatgtag
aagttaaaaatatatttcttagagtaacactttactagatgtgtgatttt
tttaaacaagtaatgttagctcttgccagtttctttgtcagttaaagaga
tcattgtgagaaataagcaagctttgtattattagaggggaagtcatgtc
ctgtcttccctaaacgaattactcacaagctaattcctagagcctgtgct
cgtgtactgtaacaatccaaaagagaattaaggtcgaagacagctagcct
atagatacctctgatcagctgaccacaagtagggacagtatatgcatcta
tccaaatgaccagagcagaatcacaagagaccaatacactagaagtacag
ggcagagcagagatgaaaggagcatgtatgacagtggcagagggacagaa
gcttgtcactggcctttaagacacaagaaaggaggtcagaggccaaggaa
tgcaagtgattacagaagccgaatatcaagaatcaccccttatagctctc
aggaatatctactctggagttgctcagggagacccacttggacttgtgat
ttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_79140735_79142006
seq2: B6Ng01-126M03.b_49_1306 (reverse)

seq1  GGGGATGATTTT-AGGAATGGCCACAGGACATATATGAGCTCACAGCAAT  49
      |||||||||||| ||||  ||||||  || | |||||||  | |||||||
seq2  GGGGATGATTTTGAGGATGGGCCAC--GAGACATATGAGGACTCAGCAAT  48

seq1  TATGACAGTACAATCAATACCTGCACAAGCTCAAGCCAGCAAAATCTCAG  99
      |    ||||||  |||||||  ||  | |||||||||||||||   ||||
seq2  T---GCAGTAC--TCAATACTGGCCAAGGCTCAAGCCAGCAAA--TTCAG  91

seq1  CATTTCTGTAAGACGTTGAACCCTGGTAGATCTACCGTCTGGAGGG-CAA  148
      ||||  |   || || |||| ||| |||||| |||||| | ||||| || 
seq2  CATTCGT---AGGCGGTGAA-CCTTGTAGAT-TACCGT-TCGAGGGCCAG  135

seq1  GCTCCGTA-TCATGGAATATTTGGATAAAAAATTTTAGACT-CAGTGGGT  196
      |||||||| |||||  ||| || ||| ||||  |||||||| ||||||||
seq2  GCTCCGTATTCATG--ATAATTTGATTAAAA--TTTAGACTCCAGTGGGT  181

seq1  TGAGAGA-GAATGATAGACTGAGAAAGCGAGGAGTGACACATACACACCC  245
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAGGAATGATAGACTGAGAAAGCGAGGAGTGACACATACACACCC  231

seq1  ACACAGAGAGAGAGAGACAGAGACAGATAGTGAGAGAGACAGAGAGACAG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGAGAGAGAGACAGAGACAGATAGTGAGAGAGACAGAGAGACAG  281

seq1  AGACTCAGAGAGACCAAGAGAGAGAGAGAGAGAGAGAGCAAGAATATGAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCAGAGAGACCAAGAGAGAGAGAGAGAGAGAGAGCAAGAATATGAA  331

seq1  CCTGGGTAGGTACCAAGGTAGGGATTAGTGGTGTGGGGTGGGATTAGAAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTAGGTACCAAGGTAGGGATTAGTGGTGTGGGGTGGGATTAGAAA  381

seq1  AGGGCAGATGAATGTGACCAAAAACATTGTATGAAATGCTCAAATAACTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGATGAATGTGACCAAAAACATTGTATGAAATGCTCAAATAACTA  431

seq1  ATAAAACTACTTTAAAGTAAATAATCCTATCTAAATAATACTTTAAAATA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTACTTTAAAGTAAATAATCCTATCTAAATAATACTTTAAAATA  481

seq1  ATGTTATAGTGATAATACATTTTGATAAGTTGATAACGTTGGAGCCTTGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATAGTGATAATACATTTTGATAAGTTGATAACGTTGGAGCCTTGG  531

seq1  TTTTTGAAACTTCAACATGTGATTGAGAAGAAAGACCAGCCCACGTGGAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAAACTTCAACATGTGATTGAGAAGAAAGACCAGCCCACGTGGAC  581

seq1  AATGACAACAGTCCACCCTAAGTCACCACTTGGATTTCCTGAGAGTCGAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACAACAGTCCACCCTAAGTCACCACTTGGATTTCCTGAGAGTCGAG  631

seq1  GTGGCGACTTGCAGCTTACTAAGGGTTCATCTCTAGGCAGCGGGTGTGAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCGACTTGCAGCTTACTAAGGGTTCATCTCTAGGCAGCGGGTGTGAG  681

seq1  TGCAGTTTCTATAAACCTTGATCATGAAAGGCCCTGATTTCTTTTTGGAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTTCTATAAACCTTGATCATGAAAGGCCCTGATTTCTTTTTGGAG  731

seq1  GGTTAGTGTCCAGGCTTACTCTCTGCTAGGCTCTAGGGACAGTTCAGCCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGTGTCCAGGCTTACTCTCTGCTAGGCTCTAGGGACAGTTCAGCCT  781

seq1  TGCAAGAAGTGGGACCTGAACGTGCCCTTCCCTACCTCAGGCAGAAGCAC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGAAGTGGGACCTGAACGTGCCCTTCCCTACCTCAGGCAGAAGCAC  831

seq1  TGCTCCCAACCATAGTCTTATAGTCTGAGGCTCCTGAATGAATTACTCCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCAACCATAGTCTTATAGTCTGAGGCTCCTGAATGAATTACTCCA  881

seq1  TGTTTGCCCTCACAAGCAGGTTTTCCCCTTGAGTGTGGAATCCATGGTAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCCCTCACAAGCAGGTTTTCCCCTTGAGTGTGGAATCCATGGTAA  931

seq1  TTAATTAGAGCTGGGCTCACTGGAGAATTTCAGTATCAGAAAACAGCACT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAGAGCTGGGCTCACTGGAGAATTTCAGTATCAGAAAACAGCACT  981

seq1  TGTGTGGGCTGGCGGTGCCTGGAACAGGCACTGAAGAGAGCAATGAGCCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGGCTGGCGGTGCCTGGAACAGGCACTGAAGAGAGCAATGAGCCA  1031

seq1  ACCCTACGTGGAAGGGATCCCCAGAGCAATGGGGCAGAGACCACTGTGAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTACGTGGAAGGGATCCCCAGAGCAATGGGGCAGAGACCACTGTGAT  1081

seq1  CGCAACAGTTCTGAGTATGTAGACATGGGAGCCTGGTGCCATGGAGACAC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAACAGTTCTGAGTATGTAGACATGGGAGCCTGGTGCCATGGAGACAC  1131

seq1  CCAGAAGCAGTCTTCCTCCAAAACTCAGTGCTTGGTGCAAACCATCAGGG  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGCAGTCTTCCTCCAAAACTCAGTGCTTGGTGCAAACCATCAGGG  1181

seq1  AAGTTCGTCTCTGAAACACCAGAGACCAACTACTGAAGGGCATCAAACAG  1245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCGTCTCTGAAACACCAGAGACCAACTACTGAAGGGCATCAAACAG  1231

seq1  AACATCTGGATGCCTCTGTGGGAATTC  1272
      |||||||||||||||||||||||||||
seq2  AACATCTGGATGCCTCTGTGGGAATTC  1258

seq1: chr18_78985803_78986865
seq2: B6Ng01-126M03.g_67_1119

seq1  GAATTCAGTAACTAAGAGTGGAGAGACAGCCAGATAGAACAAGAAAGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAACTAAGAGTGGAGAGACAGCCAGATAGAACAAGAAAGTGA  50

seq1  TAAAAACAAGAGGAAACCCAGCAATTCTTTCTGTAACCGAGAGAAGAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACAAGAGGAAACCCAGCAATTCTTTCTGTAACCGAGAGAAGAAGT  100

seq1  GTTATATAAAGCAAATACAGGGTGATGTATTGGGAAAGGCAGCAGTGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATAAAGCAAATACAGGGTGATGTATTGGGAAAGGCAGCAGTGCAA  150

seq1  AGGAAGGGCAGTGTCCATCTACAGTCAGGTAGACTTAGTGTTTCTTTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGGCAGTGTCCATCTACAGTCAGGTAGACTTAGTGTTTCTTTTCC  200

seq1  AATCTACTGTTTCACCGTGCAAACTTCTGACCATAGGATCTAATCTTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTACTGTTTCACCGTGCAAACTTCTGACCATAGGATCTAATCTTGAT  250

seq1  ATGTAATATGTCTTTATTTCTCTGCCAATTCTTCTAGATATCCATGAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATATGTCTTTATTTCTCTGCCAATTCTTCTAGATATCCATGAAAT  300

seq1  GCTAATAGTCAGAAACCATGCATTTCTTTTGGTTCCTTACAAGTTAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATAGTCAGAAACCATGCATTTCTTTTGGTTCCTTACAAGTTAGTTT  350

seq1  GATAGATATGAGATACTTGAAAAGGTTTGTGGAGTGGATGACTATATAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATATGAGATACTTGAAAAGGTTTGTGGAGTGGATGACTATATAGA  400

seq1  ATCAACACCCCTATCTTCAAGACTCAGGTATTGGTCATTGTTTTCATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACACCCCTATCTTCAAGACTCAGGTATTGGTCATTGTTTTCATGAA  450

seq1  CTAAGCCACACATTCTTAATATCTAGAATTCATTTTTTGGTATAATGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCCACACATTCTTAATATCTAGAATTCATTTTTTGGTATAATGTAG  500

seq1  AAGTTAAAAATATATTTCTTAGAGTAACACTTTACTAGATGTGTGATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAAAATATATTTCTTAGAGTAACACTTTACTAGATGTGTGATTTT  550

seq1  TTTAAACAAGTAATGTTAGCTCTTGCCAGTTTCTTTGTCAGTTAAAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACAAGTAATGTTAGCTCTTGCCAGTTTCTTTGTCAGTTAAAGAGA  600

seq1  TCATTGTGAGAAATAAGCAAGCTTTGTATTATTAGAGGGGAAGTCATGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTGAGAAATAAGCAAGCTTTGTATTATTAGAGGGGAAGTCATGTC  650

seq1  CTGTCTTCCCTAAACGAATTACTCACAAGCTAATTCCTAGAGCCTGTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTCCCTAAACGAATTACTCACAAGCTAATTCCTAGAGCCTGTGCT  700

seq1  CGTGTACTGTAACAATCCAAAAGAGAATTAAGGTCGAAGACAGCTAGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTACTGTAACAATCCAAAAGAGAATTAAGGTCGAAGACAGCTAGCCT  750

seq1  ATAGATACCTCTGATCAGCTGACCACAAGTAGGGACAGTATATGCATCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATACCTCTGATCAGCTGACCACAAGTAGGGACAGTATATGCATCTA  800

seq1  TCCAAATGACCAGAGCAGAATCACAAGAGACCAATACACTAGAAGTACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATGACCAGAGCAGAATCACAAGAGACCAATACACTAGAAGTACAG  850

seq1  GGCAGAGCAGAGATGAAAGGAGCATGTATGACAGTGGCAGAGGGACAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGCAGAGATGAAAGGAGCATGTATGACAGTGGCAGAGGGACAGAA  900

seq1  GCTTTGTCACTGGCCTTTAAGACACAAGAAAGGAGGTCAGAGGCCAAGGA  950
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GC-TTGTCACTGGCCTTTAAGACACAAGAAAGGAGGTCAGAGGCCAAGGA  949

seq1  ATGCAGGTGATTTACAGAAGCCGAATATCAAAGAAATCACCCCCTTATAG  1000
      ||||| |||| ||||||||||||||||||||   ||||| ||||||||||
seq2  ATGCAAGTGA-TTACAGAAGCCGAATATCAA--GAATCA-CCCCTTATAG  995

seq1  CTCTCAGGAAATAATCTACTCTGGAGTTTTGCTCAGTGAGACCCACTTTG  1050
      ||||||||||   |||||||||||||  |||||||| ||||||||| |||
seq2  CTCTCAGGAA--TATCTACTCTGGAG--TTGCTCAGGGAGACCCAC-TTG  1040

seq1  GACTTGTGATTTC  1063
      |||||||||||||
seq2  GACTTGTGATTTC  1053