BAC Information

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BAC

Clone NameB6Ng01-127A02
Chromosome18 (Build37)
Map Location 49,906,191 - 49,983,087
singlet/doubletdoublet
Overlap geneDtwd2
Upstream genenone
Downstream geneDmxl1, Tnfaip8, Hsd17b4, LOC626721, LOC667233, Gm93, Hdhd1a, LOC100042373
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127A02.bB6Ng01-127A02.g
ACCDH929234DH929235
length909753
definitionDH929234|Mus musculus domesticus DNA, BAC clone: B6Ng01-127A02, 5' end.DH929235|Mus musculus domesticus DNA, BAC clone: B6Ng01-127A02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,982,174 - 49,983,087)(49,906,191 - 49,906,953)
sequence
gaattcagtcagatttcttattgtaggttgtgagctttcagagtccttaa
aatctagcagtagataaataccatcttttactatacaacatattacacac
atttttctctgagaaaaaatattgtcctgtagcttataattttcaaaaaa
taaaaatggtatatttacattttctagtatagataaaacaatttgatgcc
tgccatggtatacatgtttgctatatataattttttttttttgtagagaa
gttttgctctggataaaatgagggaacatgttttgaaggttcctcttaga
agagtaggaattgagataagccactgattagagggttggatgtctaagga
aatgttgttttactaatgtaataaaaatagggagaaaatagcaggatgag
ccattttggtgagggaggctaagtataatgttagtttgtgaatttgaagt
aattacagatgatgtttgaagagatgggactgaagcttaggaattctatc
agtacttccaatgcaaacctggctgatagtcaccgtgtcaagagttcagc
cacaggaggggaagtaggtttcacagggaagagggtaaagaaagcggatc
agggagaaccaagaactaaatgtagtgacactcctgtggtgtgagttagt
gaggagatgtgactacctgattctgttgggttaatgtgggggcctgtagg
agattgtaagaaacattttgcttgtccattgctaaaagaagcaggatggt
accccaggtaatacaaagaattaaaattcaagaggagctcattggattta
ggactttaggaagtccttagtgaagtcactctttttgggtagagggtatg
gatgttattagaagataggacttgtgttcttactttcttttttttgaagg
aggaaggtt
gaattccacacccctaagacccttaccccataaaaacccctagctttcaa
gcctcgtggctgacatccgttatctcctgtgtgggatgcatgtcggtccg
gagctccgtctttaaacgtcctcatgtaattacatcaagagatggtcctt
cgtgatttttttgggtgcacgccgaatcgggagttgagtgggggtttccc
cactaggtctaacagaaccggctactttgttctcctagccgtatgttctg
tctcaccataagtgagaccagaaaacaaaaaacaaaaaagaaacaaaaca
aaaaaacaaaaaaaacaaaacaaaaaaaacaaaaacaaaaaaaccaccat
gaccctgcaacctttcccttgtaaggtggtttcagccatcctctcacagc
actgaaaagtagcaggaggaagtcaggcgtcatcaccgctgctggctgac
ttgaggcagctttgctatctgatgcttctgatgatttaaaataagtatca
cgtcttcaatttgtacttacttgctggattccctaaagtgtagccaaata
actgaggctaattgctggttggtcactatgttacaaaataactaaaaaca
ctttcttgaaaagcctcaacaaggttttcattaagagaagtgccagggtg
ctttacctattgttaaggaaatccaggatttgagaaaaaaggaggaggaa
gagaagcacgaagagaaggaggagatacaggagggaggaggagcaggagg
agg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_49982174_49983087
seq2: B6Ng01-127A02.b_46_954 (reverse)

seq1  ACCCTTCCTCCTTCAATTAATAAGAAAAGTAACGAACACAATGTCCTTAT  50
      | ||||||||||||||  || ||  ||||||| |||||||| |||| |||
seq2  AACCTTCCTCCTTCAA--AAAAAAGAAAGTAA-GAACACAA-GTCC-TAT  45

seq1  CTTCTAATAACATCCATACCCTCTACCCAAAAAGAGTGACTTCACTAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAATAACATCCATACCCTCTACCCAAAAAGAGTGACTTCACTAAGG  95

seq1  ACTTCCTAAAGTCCTAAATCCAATGAGCTCCTCTTGAATTTTAATTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTAAAGTCCTAAATCCAATGAGCTCCTCTTGAATTTTAATTCTTT  145

seq1  GTATTACCTGGGGTACCATCCTGCTTCTTTTAGCAATGGACAAGCAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTACCTGGGGTACCATCCTGCTTCTTTTAGCAATGGACAAGCAAAAT  195

seq1  GTTTCTTACAATCTCCTACAGGCCCCCACATTAACCCAACAGAATCAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTACAATCTCCTACAGGCCCCCACATTAACCCAACAGAATCAGGT  245

seq1  AGTCACATCTCCTCACTAACTCACACCACAGGAGTGTCACTACATTTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACATCTCCTCACTAACTCACACCACAGGAGTGTCACTACATTTAGT  295

seq1  TCTTGGTTCTCCCTGATCCGCTTTCTTTACCCTCTTCCCTGTGAAACCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTTCTCCCTGATCCGCTTTCTTTACCCTCTTCCCTGTGAAACCTA  345

seq1  CTTCCCCTCCTGTGGCTGAACTCTTGACACGGTGACTATCAGCCAGGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCTCCTGTGGCTGAACTCTTGACACGGTGACTATCAGCCAGGTTT  395

seq1  GCATTGGAAGTACTGATAGAATTCCTAAGCTTCAGTCCCATCTCTTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGGAAGTACTGATAGAATTCCTAAGCTTCAGTCCCATCTCTTCAAA  445

seq1  CATCATCTGTAATTACTTCAAATTCACAAACTAACATTATACTTAGCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCTGTAATTACTTCAAATTCACAAACTAACATTATACTTAGCCTC  495

seq1  CCTCACCAAAATGGCTCATCCTGCTATTTTCTCCCTATTTTTATTACATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACCAAAATGGCTCATCCTGCTATTTTCTCCCTATTTTTATTACATT  545

seq1  AGTAAAACAACATTTCCTTAGACATCCAACCCTCTAATCAGTGGCTTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAACAACATTTCCTTAGACATCCAACCCTCTAATCAGTGGCTTATC  595

seq1  TCAATTCCTACTCTTCTAAGAGGAACCTTCAAAACATGTTCCCTCATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCCTACTCTTCTAAGAGGAACCTTCAAAACATGTTCCCTCATTTT  645

seq1  ATCCAGAGCAAAACTTCTCTACAAAAAAAAAAAATTATATATAGCAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGAGCAAAACTTCTCTACAAAAAAAAAAAATTATATATAGCAAACA  695

seq1  TGTATACCATGGCAGGCATCAAATTGTTTTATCTATACTAGAAAATGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATACCATGGCAGGCATCAAATTGTTTTATCTATACTAGAAAATGTAA  745

seq1  ATATACCATTTTTATTTTTTGAAAATTATAAGCTACAGGACAATATTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACCATTTTTATTTTTTGAAAATTATAAGCTACAGGACAATATTTTT  795

seq1  TCTCAGAGAAAAATGTGTGTAATATGTTGTATAGTAAAAGATGGTATTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAGAAAAATGTGTGTAATATGTTGTATAGTAAAAGATGGTATTTA  845

seq1  TCTACTGCTAGATTTTAAGGACTCTGAAAGCTCACAACCTACAATAAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGCTAGATTTTAAGGACTCTGAAAGCTCACAACCTACAATAAGAA  895

seq1  ATCTGACTGAATTC  914
      ||||||||||||||
seq2  ATCTGACTGAATTC  909

seq1: chr18_49906191_49906953
seq2: B6Ng01-127A02.g_71_823

seq1  GAATTCCACACCCCTAAGACCCTTACCCCATAAAAACCCCTAGCTTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACCCCTAAGACCCTTACCCCATAAAAACCCCTAGCTTTCAA  50

seq1  GCCTCGTGGCTGACATCCGTTATCTCCTGTGTGGGATGCATGTCGGTCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGTGGCTGACATCCGTTATCTCCTGTGTGGGATGCATGTCGGTCCG  100

seq1  GAGCTCCGTCTTTAAACGTCCTCATGTAATTACATCAAGAGATGGTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCGTCTTTAAACGTCCTCATGTAATTACATCAAGAGATGGTCCTT  150

seq1  CGTGATTTTTTTGGGTGCACGCCGAATCGGGAGTTGAGTGGGGGTTTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGATTTTTTTGGGTGCACGCCGAATCGGGAGTTGAGTGGGGGTTTCCC  200

seq1  CACTAGGTCTAACAGAACCGGCTACTTTGTTCTCCTAGCCGTATGTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGGTCTAACAGAACCGGCTACTTTGTTCTCCTAGCCGTATGTTCTG  250

seq1  TCTCACCATAAGTGAGACCAGAAAACAAAAAACAAAAAAGAAACAAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCATAAGTGAGACCAGAAAACAAAAAACAAAAAAGAAACAAAACA  300

seq1  AAAAAACAAAAAAAACAAAACAAAAAAAACAAAAACAAAAAAACCACCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAAAAAAAACAAAACAAAAAAAACAAAAACAAAAAAACCACCAT  350

seq1  GACCCTGCAACCTTTCCCTTGTAAGGTGGTTTCAGCCATCCTCTCACAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGCAACCTTTCCCTTGTAAGGTGGTTTCAGCCATCCTCTCACAGC  400

seq1  ACTGAAAAGTAGCAGGAGGAAGTCAGGCGTCATCACCGCTGCTGGCTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAAGTAGCAGGAGGAAGTCAGGCGTCATCACCGCTGCTGGCTGAC  450

seq1  TTGAGGCAGCTTTGCTATCTGATGCTTCTGATGATTTAAAATAAGTATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCAGCTTTGCTATCTGATGCTTCTGATGATTTAAAATAAGTATCA  500

seq1  CGTCTTCAATTTGTACTTACTTGCTGGATTCCCTAAAGTGTAGCCAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTTCAATTTGTACTTACTTGCTGGATTCCCTAAAGTGTAGCCAAATA  550

seq1  ACTGAGGCTAATTGCTGGTTGGTCACTATGTTACAAAATAACTAAAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGCTAATTGCTGGTTGGTCACTATGTTACAAAATAACTAAAAACA  600

seq1  C-TTCTTGAAAAGCCTCAACAAAGGTTTTCATTAAGAGAAGTGCCAGGGT  649
      | |||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTTTCTTGAAAAGCCTCAAC-AAGGTTTTCATTAAGAGAAGTGCCAGGGT  649

seq1  GCTTTACCTATTGTTAAGGAAATCCAGGA-TTGAGAAAAAAGGAGGAGGA  698
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCTTTACCTATTGTTAAGGAAATCCAGGATTTGAGAAAAAAGGAGGAGGA  699

seq1  AGAGAAGCAGGAAGAGAAGGAGGAGATACAGGA-GGAGGAGGAGCAGGAG  747
      ||||||||| ||||||||||||||||||||||| ||||||||||||||||
seq2  AGAGAAGCACGAAGAGAAGGAGGAGATACAGGAGGGAGGAGGAGCAGGAG  749

seq1  GAGGAGCAGGAGGAGG  763
      ||||            
seq2  GAGG------------  753