BAC Information

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BAC

Clone NameB6Ng01-127D01
Chromosome18 (Build37)
Map Location 68,177,780 - 68,327,014
singlet/doubletdoublet
Overlap geneD18Ertd653e
Upstream geneGnal, Chmp1b, Mppe1, Impa2, B430212C06Rik, Cidea, Tubb6, Afg3l2, Slmo1, Spire1, Cep76, Tnfsf5ip1, Ptpn2, Seh1l, LOC667939
Downstream gene4933403F05Rik, Rnmt, Mc5r, Mc2r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127D01.bB6Ng01-127D01.g
ACCDH929370DH929371
length237996
definitionDH929370|Mus musculus domesticus DNA, BAC clone: B6Ng01-127D01, 5' end.DH929371|Mus musculus domesticus DNA, BAC clone: B6Ng01-127D01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,326,778 - 68,327,014)(68,177,780 - 68,178,784)
sequence
aacccacactcattcatttagacccatctgcacccccatgggtctctgag
gcaagaagaacttgaatctaatccaagagtctcatatgttcttccaacat
cataaaaatgtggcaggctagattcttagtttacaaggagggtaaaattt
cagatacttcactttccttggcacaaacaacctaagacaaataagaaaga
gagagagagagaaagagagagagggagggagggaggt
gaattctatcctcctcaacttcaggtctttgcttgtctgtggcaaggcct
gattggagggtcaacagtatttcgaacagatgtaatctgcggggccacag
aagactgaacggtgcagagagagaggcagcctcttccccataattccact
ggtcccttcccatctgtggctttactctagccaagaggccaacctccaaa
agaacatcagatggtgttgtaaagacccaagcctctgcaggagctgggat
gagggacaacctgtgttctgttggctttgtctctggaatgtgacacgcat
gggatcagctatgacctctggtctgaaggggagacctgtgtggtgtggat
gcttcctcccctggagcctgttgcaggtagatgcctggacttccaccttg
ctcattggcaggaatgagtgtgcgtgaggattagccatgagccaaggact
tcagtgtcagcagaatgagggggatctggtatctatatcatccttattag
ccaccactacccaaggattcctccgttacattaacagtgaacagaatcat
tatagtggatatagtgcagtgattctcaatcttcctaacgctgtaaccct
ttaatacagttcctaatgttgtgatgaccaaccccccagccataaaatca
ttttcattgctacttaataacttaattttgttaccattatgaattgtaat
gtgaatatctgtgttttccgatgtcatagcaaaccctgtaaaagggtcat
taagaaccacctggtgtgatgcatgttcatggggcccaagcaccaggctg
gcgatacatccttttaaaacccactctggagctgaacattctagtctcga
ataggcactttctgagtttcagggatgcattgtggactggaagttggcac
ctagtcaaatgcctcgctgggaggctggcctcaagtgtctctgatcctcc
tgggctttgaactgtagagatatttatatcattcattttgtatctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_68326778_68327014
seq2: B6Ng01-127D01.b_54_290 (reverse)

seq1  ACCTCCCTCCCTCCCTCTCTCTCTTTCTCTCTCTCTCTCTTTCTTATTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCTCCCTCCCTCTCTCTCTTTCTCTCTCTCTCTCTTTCTTATTTG  50

seq1  TCTTAGGTTGTTTGTGCCAAGGAAAGTGAAGTATCTGAAATTTTACCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGGTTGTTTGTGCCAAGGAAAGTGAAGTATCTGAAATTTTACCCTC  100

seq1  CTTGTAAACTAAGAATCTAGCCTGCCACATTTTTATGATGTTGGAAGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAAACTAAGAATCTAGCCTGCCACATTTTTATGATGTTGGAAGAAC  150

seq1  ATATGAGACTCTTGGATTAGATTCAAGTTCTTCTTGCCTCAGAGACCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAGACTCTTGGATTAGATTCAAGTTCTTCTTGCCTCAGAGACCCAT  200

seq1  GGGGGTGCAGATGGGTCTAAATGAATGAGTGTGGGTT  237
      |||||||||||||||||||||||||||||||||||||
seq2  GGGGGTGCAGATGGGTCTAAATGAATGAGTGTGGGTT  237

seq1: chr18_68177780_68178784
seq2: B6Ng01-127D01.g_69_1064

seq1  GAATTCTATCCTCCTCAACTTCAGGTCTTTGCTTGTCTGTGGCAAGGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCCTCCTCAACTTCAGGTCTTTGCTTGTCTGTGGCAAGGCCT  50

seq1  GATTGGAGGGTCAACAGTATTTCGAACAGATGTAATCTGCGGGGCCACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGAGGGTCAACAGTATTTCGAACAGATGTAATCTGCGGGGCCACAG  100

seq1  AAGACTGAACGGTGCAGAGAGAGAGGCAGCCTCTTCCCCATAATTCCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGAACGGTGCAGAGAGAGAGGCAGCCTCTTCCCCATAATTCCACT  150

seq1  GGTCCCTTCCCATCTGTGGCTTTACTCTAGCCAAGAGGCCAACCTCCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCTTCCCATCTGTGGCTTTACTCTAGCCAAGAGGCCAACCTCCAAA  200

seq1  AGAACATCAGATGGTGTTGTAAAGACCCAAGCCTCTGCAGGAGCTGGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATCAGATGGTGTTGTAAAGACCCAAGCCTCTGCAGGAGCTGGGAT  250

seq1  GAGGGACAACCTGTGTTCTGTTGGCTTTGTCTCTGGAATGTGACACGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGACAACCTGTGTTCTGTTGGCTTTGTCTCTGGAATGTGACACGCAT  300

seq1  GGGATCAGCTATGACCTCTGGTCTGAAGGGGAGACCTGTGTGGTGTGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCAGCTATGACCTCTGGTCTGAAGGGGAGACCTGTGTGGTGTGGAT  350

seq1  GCTTCCTCCCCTGGAGCCTGTTGCAGGTAGATGCCTGGACTTCCACCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTCCCCTGGAGCCTGTTGCAGGTAGATGCCTGGACTTCCACCTTG  400

seq1  CTCATTGGCAGGAATGAGTGTGCGTGAGGATTAGCCATGAGCCAAGGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGGCAGGAATGAGTGTGCGTGAGGATTAGCCATGAGCCAAGGACT  450

seq1  TCAGTGTCAGCAGAATGAGGGGGATCTGGTATCTATATCATCCTTATTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTCAGCAGAATGAGGGGGATCTGGTATCTATATCATCCTTATTAG  500

seq1  CCACCACTACCCAAGGATTCCTCCGTTACATTAACAGTGAACAGAATCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACTACCCAAGGATTCCTCCGTTACATTAACAGTGAACAGAATCAT  550

seq1  TATAGTGGATATAGTGCAGTGATTCTCAATCTTCCTAACGCTGTAACCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGGATATAGTGCAGTGATTCTCAATCTTCCTAACGCTGTAACCCT  600

seq1  TTAATACAGTTCCTAATGTTGTGATGACCAACCCCCCAGCCATAAAATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACAGTTCCTAATGTTGTGATGACCAACCCCCCAGCCATAAAATCA  650

seq1  TTTTCATTGCTACTTAATAACTTTAATTTTGTTACCATTATGAATTGTAA  700
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTTTCATTGCTACTTAATAAC-TTAATTTTGTTACCATTATGAATTGTAA  699

seq1  TGTGAATATCTGTGTTTTCCGATGGTCATAGGCAAACCCTGTAAAAGGGT  750
      ||||||||||||||||||||||| |||||| |||||||||||||||||||
seq2  TGTGAATATCTGTGTTTTCCGAT-GTCATA-GCAAACCCTGTAAAAGGGT  747

seq1  CATTAAGAACCA-CTGGTGTGATGCATGTTCATGGGGCCAAAGCA-CAGG  798
      |||||||||||| |||||||||||||||||||||||||| ||||| ||||
seq2  CATTAAGAACCACCTGGTGTGATGCATGTTCATGGGGCCCAAGCACCAGG  797

seq1  CTGGCGATAACATCCTTTTAAAAACCAACTCT-GAGCTGACATTTCTAAG  847
      |||||||| |||||||||| |||||| ||||| |||||||   |||| ||
seq2  CTGGCGAT-ACATCCTTTT-AAAACCCACTCTGGAGCTGAACATTCT-AG  844

seq1  TCT-GAATAGGCAC-TTCTGAGGTTCAGGGATGGCATGGTGACCTGGAAG  895
      ||| |||||||||| ||||||| ||||||||| |||| |||  |||||||
seq2  TCTCGAATAGGCACTTTCTGAGTTTCAGGGAT-GCATTGTGGACTGGAAG  893

seq1  TTGGCAACTAGTTCATATGCTCGGCTGGAGTGGCTTGCCTTCTAGTGTCT  945
      |||||| |||| ||| ||||   ||||| | |||| ||| || |||||||
seq2  TTGGCACCTAG-TCAAATGCCTCGCTGG-GAGGCTGGCC-TCAAGTGTCT  940

seq1  CTGAATCCT-CTGTGCTTTGTAGCTTGAGGAATATTTATATCATTTCCAT  994
      ||| ||||| ||| |||||| | ||  ||  ||||||||||||||  || 
seq2  CTG-ATCCTCCTGGGCTTTG-AACTGTAGAGATATTTATATCATT--CA-  985

seq1  TTTTGTATCTT  1005
      |||||||||||
seq2  TTTTGTATCTT  996