BAC Information

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BAC

Clone NameB6Ng01-127M09
Chromosome18 (Build37)
Map Location 57,974,916 - 58,138,176
singlet/doubletdoublet
Overlap geneSlc12a2, 9330166H04Rik
Upstream geneMarch3, C330018D20Rik, Megf10, LOC672445, Prrc1, 1700011I03Rik, 4930511M06Rik, 2210409D07Rik
Downstream geneFbn2, Slc27a6, Isoc1, Adamts19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127M09.bB6Ng01-127M09.g
ACCDH929801DH929802
length1,146982
definitionDH929801|Mus musculus domesticus DNA, BAC clone: B6Ng01-127M09, 5' end.DH929802|Mus musculus domesticus DNA, BAC clone: B6Ng01-127M09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,137,013 - 58,138,176)(57,974,916 - 57,975,903)
sequence
gaattcaatttccaacagccacatggtggcttatagccatgtataatgag
atctggtgccctcttccggtctggaggcatatatgcaggcagatcgccat
atacatagtaaatactttttttttaagtaaaaggaaagtgaatttgtcga
cctcagaaaacagagcatttacctctcagtatccattcaactcttagctt
agtttataactttaaaataagggagtgttgaggagagtctctacttataa
ctcctgcccaaagcgttacattcaaggggatactctgagattgagtaaca
cactgtagatttgtccactcttgtcttatagactcgtgaagccctcacag
ataaattgagaaaggtgtgaatgctttgattggcttggacttgagagtca
agagtggaggctagtcttcacggggcagtagccctgtggctttacgtgtc
ttctacagttcttcaaatccatggtgcccagatgtttgcagacttcttct
gtatccatcaaactcaagttctcggagtcagcaaaactcagaagcttttc
aagggcttcttgaatcgttcacccctgctcttatctgaagggtaaccgac
tttacaagcgtgtgtttgaggaatccctagcctgctgacactgaggaagg
ttggcggctggactgagttcatttggtttccaaagatggatggatgggct
tccttgtactgccgctcattctcttcccgtggaaggaaggcctgctagtt
tctactaacacacacccacgatggactcacaataaaaagtcatttgccag
cgagaagatgcagctacaaaagaagtgtttctctgacaggaatttacact
tcaggaatgtgtattatgcagagctcagtggtgcataccagtaattctag
acacgtgggaggctgaggcagagaacctgctgacctgaggagttaagaca
gcctggagaatggtttaaaagtgaccataattcctatttggtggaagttc
taagactaatcttcatctgcaataagcttaaatttacaaatatatcttta
aagaatagacgattgccaagtgtatgcacaatatcgcgattgtcatgcac
atatcgtgcacacaccacatacctttgatatataatcttggtaagg
gaattcccataccggctatttcaaagcattgtaagtttttgaagatttaa
attactcattgcaggagattagactttaatctgaggacattgatttgaaa
ttccaccaccaaaggcaaccccagcttgctgctggttatatctccattca
gattgtgcttatcaatcatgagcgttgttcaacttgaaaggacaagtgtg
actcagtagggctggagaaaaaaaaaagtccttgggtgaaagtggcctga
gaaagccaacaaaggtccttctacttcactctgcataaactgaaaccatc
caaactctctggggagggagaaactagagtttctatctggtgccaaacca
agtctgccctcctgttggtggatataagacaccttcagtcactgatatgc
agcaagaaactggagcgtgcccaggaaacgtttggtgttggccattgaaa
aggctatatcgaatgataatggctatatcaaaatgctattgcatatgcat
gaaggatgactgctgatttatttttcctttgaaaaatgttaattacagtc
catacttttagaaagttctgcctgaagacagagatagcctgtctcactgc
aagtgtttttaatagccccgaagagggaaatgacatcaagataagatact
cttgccattttattaaattatgtcaaaatatcccgcagagcttacgttgt
tccacaaattctacattattcaaaaacggttcccttgtcttttaattgaa
gcccccaaaaaggattacatttgttaaggggaagagaaaaaaatcaagta
cgaaaacagaggtcaggagtgagtagaaagtagaacctcttccagcataa
aatcagatgaatttcctcagagttgccttcctaagaatgtattgacttgt
tcctcaacactaggacctgagaccctgttttcagtggacttgtctatttt
ggaagatagtccagggcagctgaggttactaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_58137013_58138176
seq2: B6Ng01-127M09.b_48_1193 (reverse)

seq1  CCTTACCCAAAGTAATATATCAAATGTATGTGTGTGTGTGCACGTATGTG  50
      ||||| ||||  | |||||||||| ||||||| ||||||||||| || ||
seq2  CCTTA-CCAAGATTATATATCAAAGGTATGTG-GTGTGTGCACG-ATATG  47

seq1  TGCATGTACAATTTGCGATAATGGTGCATACACTGTGCAATCTGTCTATT  100
      |||||| |||| | ||||| || |||||||||||  |||||| |||||||
seq2  TGCATG-ACAA-TCGCGAT-ATTGTGCATACACTTGGCAATC-GTCTATT  93

seq1  CTTTTAAAGATATTATTGTAAATTTAAAGCTTATTTGCAGGATGAAGATT  150
      | |||||||||||  |||||||||| ||||||| ||||| ||||||||||
seq2  C-TTTAAAGATATATTTGTAAATTT-AAGCTTA-TTGCA-GATGAAGATT  139

seq1  AGTTCTTAGAAACTTCCACCAAATAGGAATTAATGGTCACTTTTTAAACC  200
      || |||||| ||||||||||||||||||||| |||||||| |||||||||
seq2  AG-TCTTAG-AACTTCCACCAAATAGGAATT-ATGGTCAC-TTTTAAACC  185

seq1  ATTCTCCAGGCTGGTCTTAAACTCCTCAGGTCAGCAGGTTCTCCTGCCTC  250
      |||||||||||| ||||| ||||||||||||||||||||||| |||||||
seq2  ATTCTCCAGGCT-GTCTT-AACTCCTCAGGTCAGCAGGTTCT-CTGCCTC  232

seq1  AGCCTCCCACGTGTCTAGAATTACTGGTATGCACCACTGAGCTCTGCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCCACGTGTCTAGAATTACTGGTATGCACCACTGAGCTCTGCATA  282

seq1  ATACACATTCCTGAAGTGTAAATTCCTGTCAGAGAAACACTTCTTTTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACATTCCTGAAGTGTAAATTCCTGTCAGAGAAACACTTCTTTTGTA  332

seq1  GCTGCATCTTCTCGCTGGCAAATGACTTTTTATTGTGAGTCCATCGTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCATCTTCTCGCTGGCAAATGACTTTTTATTGTGAGTCCATCGTGGG  382

seq1  TGTGTGTTAGTAGAAACTAGCAGGCCTTCCTTCCACGGGAAGAGAATGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTAGTAGAAACTAGCAGGCCTTCCTTCCACGGGAAGAGAATGAG  432

seq1  CGGCAGTACAAGGAAGCCCATCCATCCATCTTTGGAAACCAAATGAACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAGTACAAGGAAGCCCATCCATCCATCTTTGGAAACCAAATGAACTC  482

seq1  AGTCCAGCCGCCAACCTTCCTCAGTGTCAGCAGGCTAGGGATTCCTCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGCCGCCAACCTTCCTCAGTGTCAGCAGGCTAGGGATTCCTCAAA  532

seq1  CACACGCTTGTAAAGTCGGTTACCCTTCAGATAAGAGCAGGGGTGAACGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGCTTGTAAAGTCGGTTACCCTTCAGATAAGAGCAGGGGTGAACGA  582

seq1  TTCAAGAAGCCCTTGAAAAGCTTCTGAGTTTTGCTGACTCCGAGAACTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGAAGCCCTTGAAAAGCTTCTGAGTTTTGCTGACTCCGAGAACTTG  632

seq1  AGTTTGATGGATACAGAAGAAGTCTGCAAACATCTGGGCACCATGGATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGATGGATACAGAAGAAGTCTGCAAACATCTGGGCACCATGGATTT  682

seq1  GAAGAACTGTAGAAGACACGTAAAGCCACAGGGCTACTGCCCCGTGAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACTGTAGAAGACACGTAAAGCCACAGGGCTACTGCCCCGTGAAGA  732

seq1  CTAGCCTCCACTCTTGACTCTCAAGTCCAAGCCAATCAAAGCATTCACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTCCACTCTTGACTCTCAAGTCCAAGCCAATCAAAGCATTCACAC  782

seq1  CTTTCTCAATTTATCTGTGAGGGCTTCACGAGTCTATAAGACAAGAGTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCAATTTATCTGTGAGGGCTTCACGAGTCTATAAGACAAGAGTGG  832

seq1  ACAAATCTACAGTGTGTTACTCAATCTCAGAGTATCCCCTTGAATGTAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCTACAGTGTGTTACTCAATCTCAGAGTATCCCCTTGAATGTAAC  882

seq1  GCTTTGGGCAGGAGTTATAAGTAGAGACTCTCCTCAACACTCCCTTATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGGCAGGAGTTATAAGTAGAGACTCTCCTCAACACTCCCTTATTT  932

seq1  TAAAGTTATAAACTAAGCTAAGAGTTGAATGGATACTGAGAGGTAAATGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTATAAACTAAGCTAAGAGTTGAATGGATACTGAGAGGTAAATGC  982

seq1  TCTGTTTTCTGAGGTCGACAAATTCACTTTCCTTTTACTTAAAAAAAAAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTCTGAGGTCGACAAATTCACTTTCCTTTTACTTAAAAAAAAAG  1032

seq1  TATTTACTATGTATATGGCGATCTGCCTGCATATATGCCTCCAGACCGGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACTATGTATATGGCGATCTGCCTGCATATATGCCTCCAGACCGGA  1082

seq1  AGAGGGCACCAGATCTCATTATACATGGCTATAAGCCACCATGTGGCTGT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCACCAGATCTCATTATACATGGCTATAAGCCACCATGTGGCTGT  1132

seq1  TGGAAATTGAATTC  1164
      ||||||||||||||
seq2  TGGAAATTGAATTC  1146

seq1: chr18_57974916_57975903
seq2: B6Ng01-127M09.g_70_1051

seq1  GAATTCCCATACCGGCTATTTCAAAGCATTGTAAGTTTTTGAAGATTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATACCGGCTATTTCAAAGCATTGTAAGTTTTTGAAGATTTAA  50

seq1  ATTACTCATTGCAGGAGATTAGACTTTAATCTGAGGACATTGATTTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTCATTGCAGGAGATTAGACTTTAATCTGAGGACATTGATTTGAAA  100

seq1  TTCCACCACCAAAGGCAACCCCAGCTTGCTGCTGGTTATATCTCCATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCACCAAAGGCAACCCCAGCTTGCTGCTGGTTATATCTCCATTCA  150

seq1  GATTGTGCTTATCAATCATGAGCGTTGTTCAACTTGAAAGGACAAGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTGCTTATCAATCATGAGCGTTGTTCAACTTGAAAGGACAAGTGTG  200

seq1  ACTCAGTAGGGCTGGAGAAAAAAAAAAGTCCTTGGGTGAAAGTGGCCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTAGGGCTGGAGAAAAAAAAAAGTCCTTGGGTGAAAGTGGCCTGA  250

seq1  GAAAGCCAACAAAGGTCCTTCTACTTCACTCTGCATAAACTGAAACCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCAACAAAGGTCCTTCTACTTCACTCTGCATAAACTGAAACCATC  300

seq1  CAAACTCTCTGGGGAGGGAGAAACTAGAGTTTCTATCTGGTGCCAAACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCTCTGGGGAGGGAGAAACTAGAGTTTCTATCTGGTGCCAAACCA  350

seq1  AGTCTGCCCTCCTGTTGGTGGATATAAGACACCTTCAGTCACTGATATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCCCTCCTGTTGGTGGATATAAGACACCTTCAGTCACTGATATGC  400

seq1  AGCAAGAAACTGGAGCGTGCCCAGGAAACGTTTGGTGTTGGCCATTGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAAACTGGAGCGTGCCCAGGAAACGTTTGGTGTTGGCCATTGAAA  450

seq1  AGGCTATATCGAATGATAATGGCTATATCAAAATGCTATTGCATATGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTATATCGAATGATAATGGCTATATCAAAATGCTATTGCATATGCAT  500

seq1  GAAGGATGACTGCTGATTTATTTTTCCTTTGAAAAATGTTAATTACAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATGACTGCTGATTTATTTTTCCTTTGAAAAATGTTAATTACAGTC  550

seq1  CATACTTTTAGAAAGTTCTGCCTGAAGACAGAGATAGCCTGTCTCACTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTTTTAGAAAGTTCTGCCTGAAGACAGAGATAGCCTGTCTCACTGC  600

seq1  AAGTGTTTTTAATAGCCCCGAAGAGGGAAATGACATCAAGATAAGATACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTTTTAATAGCCCCGAAGAGGGAAATGACATCAAGATAAGATACT  650

seq1  CTTGCCATTTTATTAAATTATGTCAAAATATCCCGCAGAGCTTACGTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCATTTTATTAAATTATGTCAAAATATCCCGCAGAGCTTACGTTGT  700

seq1  TCCACAAATTCTACATTATTCAAAAACGGTTCCCTTGTCTTTTAATTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAAATTCTACATTATTCAAAAACGGTTCCCTTGTCTTTTAATTGAA  750

seq1  GCCCCCCAAAAAGGAATACATTTGTTAAGGGGAAGAGAAAAAAAATCAAG  800
      | ||||||||||||| ||||||||||||||||||||| ||||||||||||
seq2  G-CCCCCAAAAAGGATTACATTTGTTAAGGGGAAGAG-AAAAAAATCAAG  798

seq1  TACGAAAACAGAGGTCAGGAGTGAGTAGAAAGTAGAACCTC-TCCAGCAT  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TACGAAAACAGAGGTCAGGAGTGAGTAGAAAGTAGAACCTCTTCCAGCAT  848

seq1  AAAATCAGATGAATTCTCTCCAGAGTTGCCTTCCTAAGAATGTA-TGACT  898
      ||||||||||||||| ||  |||||||||||||||||||||||| |||||
seq2  AAAATCAGATGAATT-TCCTCAGAGTTGCCTTCCTAAGAATGTATTGACT  897

seq1  TGTTCCTCAACACTAAGGACCTGAGACCCTGTTTTCAGTGAACTTGTCTA  948
      |||||||||||||| ||||||||||||||||||||||||| |||||||||
seq2  TGTTCCTCAACACT-AGGACCTGAGACCCTGTTTTCAGTGGACTTGTCTA  946

seq1  ATTTTGAAGATAGTCCAGTGGCCAGTCTGAGGGTTACTAA  988
       ||| ||||||||||||  || ||| |||| |||||||||
seq2  TTTTGGAAGATAGTCCA--GGGCAG-CTGA-GGTTACTAA  982