BAC Information

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BAC

Clone NameB6Ng01-128A18
Chromosome18 (Build37)
Map Location 17,910,332 - 18,037,579
singlet/doubletdoublet
Overlap geneLOC100040647
Upstream geneCdh2, LOC665519, 1700001G01Rik, 4921533I20Rik
Downstream geneLOC100040658
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128A18.bB6Ng01-128A18.g
ACCDH930001DH930002
length1,1131,096
definitionDH930001|Mus musculus domesticus DNA, BAC clone: B6Ng01-128A18, 5' end.DH930002|Mus musculus domesticus DNA, BAC clone: B6Ng01-128A18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,036,445 - 18,037,579)(17,910,332 - 17,911,428)
sequence
gaattcagggatcctcctgtgtctaccttccaaatgttggattaaaagca
tgcaccacaactgcctaactataaggttaattcttcaacattataaatat
atatcagaaagaagatagtattttctagcattagattttgatacttcctt
tgatttatgtgtgagaagtatatcattccttccatatttatacagtgaga
gtatgaaattagacaatatttttatggagttatggattaaacctataacc
tttttcatgctatgggaggcaattgatacgcttgagaaagtcttctgtat
gtgtcaggatgctgtaaatccagctttctttctcctattgaatgctaaga
ttacaactaagaaccataaagattctataaattatgtcatgttcttttat
tttcagttttatatcatcttaacatatcataatcatttaatttaacaatg
ccatgtcagacacctgtgtgtttctgatttagttatataattatatgcac
ataaatgacaaactcatgaagtacaggtgttctttgtggctgcaagcaat
gaagagagaagatacatgttcatgccattcagtcgctataggcaaattca
taatcaatatcgtgtggtcagctgtcagaaaaatacagcaaaaaaaaaaa
aaatcaccatcgacacaccttcaatccaaatattgatttttccttcatct
ttgatttataaaatggcttcaaattaatattattcagccttacttaattg
cctaagtatttgatgagtgtaattattgatctttttaaataataactaca
tgaaatttctcttttctgtaaattttaacatatatgaatacatttattat
ttagtactatttatcatataaattatttcatgttagaacaaaatcagaca
tcaaaatctaatacaagaaaaatcaaatgcatatatatattttgattctg
tttctctttctttcattgaaatatatagataaataattgaaggagtaaaa
tgatatacactaaataaatgtttttttcagtgatgtgtctgaaaagagaa
tatagcacacatagcacagagcagaataagagtcgtccctccaaaaaaaa
ttttttcaactct
gaattctttataaattatttttctgtgcctccactatgtctctctcttat
ctctgtctctctctctctctgtatgtgaaatatatgtgtgttcattcatt
tattcctgcagtagaggacatctccattagataagtgttgttacagattt
gtaagcaataaaaacaatgaggtgtgtgtgtgtttaggcagatgcttgtc
cctgtacctagattgaagaccagaggaggatgaccagtgactgttctatc
aatctttcccttgctctagtaagacatagtctctctctgaacctggaact
tggatggtggtcaggaaatcccagtggtcttgctgatccccctctggatt
ccaaacatccctgggtctgcatgaaatatatggcctagcctgggttttca
tataggcattataaatttgaattcagatcttcatgtgtttgcaacaaccc
cttttaacccaccgagtcactcccttagatcttcctttctcgctctctct
ttttttaaatgtatatttctcctacaatatttcctgattgcagtatttcc
ttccttctttaatcccagttatgtctactccttccctttctcccagatct
actgctcctttgtttctattcagaaaagagcaggcctcccagtgatctca
acctaatactagtgatatcaacctaatatgtggtaaaaagaagcaatgag
actacacgcaaacccccatatcaaggctggacaaggcaaccagtagaagg
aaaatggtcccaagtgcaggcaaaagagtcaaagacacacccactccaac
agttaggagtcccacaaaaacaagcgcatgaatacagagaaagtagcaca
ggtccatgcaggaaacgtgatacctgctttctgtgagcccccttgagcct
tacatcattgattctgtgggtcatgttctgctggtgtcctgggatcttgg
cttctccagtctctcctcaccctctgtggggttccctgaactctgcttaa
tgtttgagtgtgggtcttctgcaaaaaagttccattcttcacttctacca
aggctctgttatttaactgttctgaattataagagcatttgcactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_18036445_18037579
seq2: B6Ng01-128A18.b_44_1156 (reverse)

seq1  AGAGTTTGGAAAAAAAATTTTTTTTTTGGGGGGGGACGACTCTTATTCTG  50
      ||||||     ||||||||||||||    || ||||||||||||||||| 
seq2  AGAGTT----GAAAAAATTTTTTTT----GGAGGGACGACTCTTATTCT-  41

seq1  GCTCTGTGCCTATGTGTGCTATAATCTCTTTTCAGGACACATCACTGAAA  100
      |||||||| |||||||||||||| |||||||||| ||||||||||||  |
seq2  GCTCTGTG-CTATGTGTGCTATATTCTCTTTTCA-GACACATCACTG--A  87

seq1  AAAAAACATTTAATTTAGTGTTATATCATTTTACTCCTTTCAATTTATTT  150
      ||||||||||| |||||||| |||||||||||||||| |||||||   ||
seq2  AAAAAACATTT-ATTTAGTG-TATATCATTTTACTCC-TTCAATT--ATT  132

seq1  TATCTATATTATTTCAATGAAAGAAAGAGAAACAAGAATCAAAATATTAT  200
      |||||||| |||||||||||||||||||||||| |||||||||||| |||
seq2  TATCTATA-TATTTCAATGAAAGAAAGAGAAAC-AGAATCAAAATA-TAT  179

seq1  ATATGCATTTGATTTTTCTTGTATTAGATTTTGATGTCTTGATTTTGTTC  250
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATATGCATTTGATTTTTCTTGTATTAGATTTTGATGTC-TGATTTTGTTC  228

seq1  TAACATGAAATAATTTATATGATAAATAGTACTAAATAATAAATGTATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGAAATAATTTATATGATAAATAGTACTAAATAATAAATGTATTC  278

seq1  ATATATGTTAAAATTTACAGAAAAGAGAAATTTCATGTAGTTATTATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTTAAAATTTACAGAAAAGAGAAATTTCATGTAGTTATTATTTA  328

seq1  AAAAGATCAATAATTACACTCATCAAATACTTAGGCAATTAAGTAAGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATCAATAATTACACTCATCAAATACTTAGGCAATTAAGTAAGGCT  378

seq1  GAATAATATTAATTTGAAGCCATTTTATAAATCAAAGATGAAGGAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATATTAATTTGAAGCCATTTTATAAATCAAAGATGAAGGAAAAAT  428

seq1  CAATATTTGGATTGAAGGTGTGTCGATGGTGATTTTTTTTTTTTTTGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTTGGATTGAAGGTGTGTCGATGGTGATTTTTTTTTTTTTTGCTG  478

seq1  TATTTTTCTGACAGCTGACCACACGATATTGATTATGAATTTGCCTATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCTGACAGCTGACCACACGATATTGATTATGAATTTGCCTATAG  528

seq1  CGACTGAATGGCATGAACATGTATCTTCTCTCTTCATTGCTTGCAGCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTGAATGGCATGAACATGTATCTTCTCTCTTCATTGCTTGCAGCCAC  578

seq1  AAAGAACACCTGTACTTCATGAGTTTGTCATTTATGTGCATATAATTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACACCTGTACTTCATGAGTTTGTCATTTATGTGCATATAATTATA  628

seq1  TAACTAAATCAGAAACACACAGGTGTCTGACATGGCATTGTTAAATTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAATCAGAAACACACAGGTGTCTGACATGGCATTGTTAAATTAAA  678

seq1  TGATTATGATATGTTAAGATGATATAAAACTGAAAATAAAAGAACATGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATGATATGTTAAGATGATATAAAACTGAAAATAAAAGAACATGAC  728

seq1  ATAATTTATAGAATCTTTATGGTTCTTAGTTGTAATCTTAGCATTCAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTATAGAATCTTTATGGTTCTTAGTTGTAATCTTAGCATTCAATA  778

seq1  GGAGAAAGAAAGCTGGATTTACAGCATCCTGACACATACAGAAGACTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAGAAAGCTGGATTTACAGCATCCTGACACATACAGAAGACTTTC  828

seq1  TCAAGCGTATCAATTGCCTCCCATAGCATGAAAAAGGTTATAGGTTTAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCGTATCAATTGCCTCCCATAGCATGAAAAAGGTTATAGGTTTAAT  878

seq1  CCATAACTCCATAAAAATATTGTCTAATTTCATACTCTCACTGTATAAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAACTCCATAAAAATATTGTCTAATTTCATACTCTCACTGTATAAAT  928

seq1  ATGGAAGGAATGATATACTTCTCACACATAAATCAAAGGAAGTATCAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGGAATGATATACTTCTCACACATAAATCAAAGGAAGTATCAAAA  978

seq1  TCTAATGCTAGAAAATACTATCTTCTTTCTGATATATATTTATAATGTTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGCTAGAAAATACTATCTTCTTTCTGATATATATTTATAATGTTG  1028

seq1  AAGAATTAACCTTATAGTTAGGCAGTTGTGGTGCATGCTTTTAATCCAAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTAACCTTATAGTTAGGCAGTTGTGGTGCATGCTTTTAATCCAAC  1078

seq1  ATTTGGAAGGTAGACACAGGAGGATCCCTGAATTC  1135
      |||||||||||||||||||||||||||||||||||
seq2  ATTTGGAAGGTAGACACAGGAGGATCCCTGAATTC  1113

seq1: chr18_17910332_17911428
seq2: B6Ng01-128A18.g_69_1164

seq1  GAATTCTTTATAAATTATTTTTCTGTGCCTCCACTATGTCTCTCTCTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATAAATTATTTTTCTGTGCCTCCACTATGTCTCTCTCTTAT  50

seq1  CTCTGTCTCTCTCTCTCTCTGTATGTGAAATATATGTGTGTTCATTCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTCTCTCTCTCTCTGTATGTGAAATATATGTGTGTTCATTCATT  100

seq1  TATTCCTGCAGTAGAGGACATCTCCATTAGATAAGTGTTGTTACAGATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTGCAGTAGAGGACATCTCCATTAGATAAGTGTTGTTACAGATTT  150

seq1  GTAAGCAATAAAAACAATGAGGTGTGTGTGTGTTTAGGCAGATGCTTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCAATAAAAACAATGAGGTGTGTGTGTGTTTAGGCAGATGCTTGTC  200

seq1  CCTGTACCTAGATTGAAGACCAGAGGAGGATGACCAGTGACTGTTCTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTACCTAGATTGAAGACCAGAGGAGGATGACCAGTGACTGTTCTATC  250

seq1  AATCTTTCCCTTGCTCTAGTAAGACATAGTCTCTCTCTGAACCTGGAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTCCCTTGCTCTAGTAAGACATAGTCTCTCTCTGAACCTGGAACT  300

seq1  TGGATGGTGGTCAGGAAATCCCAGTGGTCTTGCTGATCCCCCTCTGGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGTGGTCAGGAAATCCCAGTGGTCTTGCTGATCCCCCTCTGGATT  350

seq1  CCAAACATCCCTGGGTCTGCATGAAATATATGGCCTAGCCTGGGTTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACATCCCTGGGTCTGCATGAAATATATGGCCTAGCCTGGGTTTTCA  400

seq1  TATAGGCATTATAAATTTGAATTCAGATCTTCATGTGTTTGCAACAACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGCATTATAAATTTGAATTCAGATCTTCATGTGTTTGCAACAACCC  450

seq1  CTTTTAACCCACCGAGTCACTCCCTTAGATCTTCCTTTCTCGCTCTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAACCCACCGAGTCACTCCCTTAGATCTTCCTTTCTCGCTCTCTCT  500

seq1  TTTTTTAAATGTATATTTCTCCTACAATATTTCCTGATTGCAGTATTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAATGTATATTTCTCCTACAATATTTCCTGATTGCAGTATTTCC  550

seq1  TTCCTTCTTTAATCCCAGTTATGTCTACTCCTTCCCTTTCTCCCAGATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTTTAATCCCAGTTATGTCTACTCCTTCCCTTTCTCCCAGATCT  600

seq1  ACTGCTCCTTTGTTTCTATTCAGAAAAGAGCAGGCCTCCCAGTGATCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCCTTTGTTTCTATTCAGAAAAGAGCAGGCCTCCCAGTGATCTCA  650

seq1  ACCTAATACTAGTGATATCAACCTAATATGTGGTAAAAAGAAGCAATGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAATACTAGTGATATCAACCTAATATGTGGTAAAAAGAAGCAATGAG  700

seq1  ACTACACGCAAACCCCCATATCAAGGCTGGACAAGGCAACCAGTAGAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACACGCAAACCCCCATATCAAGGCTGGACAAGGCAACCAGTAGAAGG  750

seq1  AAAATGGTCCCAAGTGCAGGCAAAAGAGTCAAAGACACACCCACTCCAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGTCCCAAGTGCAGGCAAAAGAGTCAAAGACACACCCACTCCAAC  800

seq1  AGTTAGGAGTCCCACAAAACCAAGCGCATGAATACAGAGAAAGTAGCACA  850
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGTTAGGAGTCCCACAAAAACAAGCGCATGAATACAGAGAAAGTAGCACA  850

seq1  GGTCCATGCAGGAAACGTGATACCTGC-TTCTGTGAGCCCCCTTGAGCCT  899
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGTCCATGCAGGAAACGTGATACCTGCTTTCTGTGAGCCCCCTTGAGCCT  900

seq1  TACATCATTGATTCTGTGGGTCATGTTCTGCTGGTGTCCT-GGATCCTTT  948
      |||||||||||||||||||||||||||||||||||||||| |||||  ||
seq2  TACATCATTGATTCTGTGGGTCATGTTCTGCTGGTGTCCTGGGATC--TT  948

seq1  GGCTTCTCCAGTCTCTCCTCACCCTCTGTGGGGGTTCCCTGAACTCTGCT  998
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGCTTCTCCAGTCTCTCCTCACCCTCTGT-GGGGTTCCCTGAACTCTGCT  997

seq1  TAATGTTTGAGTGTGGGTCTTCTGCAAAAAAAGTCCATTCTCCACTTCTA  1048
      |||||||||||||||||||||||||||||||  |||||||| ||||||||
seq2  TAATGTTTGAGTGTGGGTCTTCTGCAAAAAAGTTCCATTCTTCACTTCTA  1047

seq1  CCAAGCCTCCTGTTATTTAACTGTTCTG-ATTATAAGAGCATTTGCACTT  1097
      ||||| || ||||||||||||||||||| |||||||||||||||||||||
seq2  CCAAGGCT-CTGTTATTTAACTGTTCTGAATTATAAGAGCATTTGCACTT  1096