BAC Information

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BAC

Clone NameB6Ng01-128M20
Chromosome18 (Build37)
Map Location 40,023,769 - 40,151,921
singlet/doubletdoublet
Overlap geneLOC100041939
Upstream geneFgf1, EG545253, Arhgap26, Nr3c1, Pabpc2
Downstream geneYipf5, Kctd16, EG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128M20.bB6Ng01-128M20.g
ACCDH930557DH930558
length7461,125
definitionDH930557|Mus musculus domesticus DNA, BAC clone: B6Ng01-128M20, 5' end.DH930558|Mus musculus domesticus DNA, BAC clone: B6Ng01-128M20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,023,769 - 40,024,514)(40,150,866 - 40,151,921)
sequence
gaattcttcccctgactttcctcagtgatggcctgagatttggacctaca
gctggcataaactctttcctcctcaagtttgcttctgactatagctttta
tcccagtcacagaatccctagctctggcaatgcaatagaagaatatcttt
gttgccaaaggtatgaaagtgctcgttgaacaaaacgtcaaaggctcagt
gagaaagttctttaaaagattactgcatttatcttaaaggtgataacttc
tgtttagtgaagggcaacatgaatacctagatggtaagtgggaaagttct
caccaacctgaaattggcaagatatttctgattaatgttatatcagaaaa
aatcttatataccgtcaagataacaaccccagacaggccacaaatgaaca
aaaatataactagatcaccccagaaaggtgctaaaaagactgtaagcatg
gaaaccatgttcactcgtgctttggctatgatgtattagttaactggaaa
aacttaaactcaggacactttcaaagctggtggttttggaaaccctgacc
tcctttggtattgctgactgagcagatgttcagggaaatcacttggcaca
atttagtcaaaccaagtctatataagtctatgattcagtaactctactat
aaatgtacatggaaaaacaagtggtacgtgctgatccatctctacccata
tatatatatatatatatatatatatatatatatatatatatgtgtg
gaattcttttttttcccattttttattaggtatttagctcatttacattt
ccaatgctataccaaaagtcccccatacccacccacccccactcccctac
ccacccactccccctttttggctctggcgttcccctgtactggggcatat
aaagtttgcgtgtccaatgggcctgcctctctttccagtgatggccgact
aggccatcttttgatacatatgcagctagagtcaagagctctggggtact
ggttagttcataatgttggccactgaattcttaagttctgctgttcaaaa
actcttgtgttttctgttttcttctttttattatatttattttatttaaa
gcaattttaaatttaaatatatactgatcatagtcttccccttctccaag
tccttccagatcctctctactccctacccatgtagttctttctcaaaacc
aaacaagcaaaaatataaaaacaaacacccccaaaccaaaaaaacaatta
aaaaaccaaaataaaacaacactctaaaagaaaagaacaggaaaaaaaaa
agaagcagggggtgaaggagaaaacccaccaaactgtgaccaaaagaata
tcacacataaaaatcttggttgtccaaattatattgtttaactactcctg
aacatgaggcctgaagtggttgatataactagtgtcatttcattggagaa
cattgtttccttctgcaagcaggtattaataacagtttcattgtttaata
tttaccctagtggctatgttttcattcattcattcatttcattcattcat
ttattcattcatcatacattttattttcttaaaataagattataattgag
gtaaaacaaaaacttcccacattggaagctgaacaagacaaatgaacaaa
ggaaaagaacccaacttattcacacactcaggaatcccagaaaccactga
gctggaagccttcatacatacccagagggccttgatacaggtctgtgtgg
tcttggtgaatgctgcttcagtctccgtgagttctaatgagctttgctaa
tgtggatttacagaagtcttgtttgctggttcctccatcccctctggcct
ctttcactgctttgggctcctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_40023769_40024514
seq2: B6Ng01-128M20.b_49_794

seq1  GAATTCTTCCCCTGACTTTCCTCAGTGATGGCCTGAGATTTGGACCTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCCTGACTTTCCTCAGTGATGGCCTGAGATTTGGACCTACA  50

seq1  GCTGGCATAAACTCTTTCCTCCTCAAGTTTGCTTCTGACTATAGCTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCATAAACTCTTTCCTCCTCAAGTTTGCTTCTGACTATAGCTTTTA  100

seq1  TCCCAGTCACAGAATCCCTAGCTCTGGCAATGCAATAGAAGAATATCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTCACAGAATCCCTAGCTCTGGCAATGCAATAGAAGAATATCTTT  150

seq1  GTTGCCAAAGGTATGAAAGTGCTCGTTGAACAAAACGTCAAAGGCTCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCAAAGGTATGAAAGTGCTCGTTGAACAAAACGTCAAAGGCTCAGT  200

seq1  GAGAAAGTTCTTTAAAAGATTACTGCATTTATCTTAAAGGTGATAACTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGTTCTTTAAAAGATTACTGCATTTATCTTAAAGGTGATAACTTC  250

seq1  TGTTTAGTGAAGGGCAACATGAATACCTAGATGGTAAGTGGGAAAGTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGTGAAGGGCAACATGAATACCTAGATGGTAAGTGGGAAAGTTCT  300

seq1  CACCAACCTGAAATTGGCAAGATATTTCTGATTAATGTTATATCAGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAACCTGAAATTGGCAAGATATTTCTGATTAATGTTATATCAGAAAA  350

seq1  AATCTTATATACCGTCAAGATAACAACCCCAGACAGGCCACAAATGAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTATATACCGTCAAGATAACAACCCCAGACAGGCCACAAATGAACA  400

seq1  AAAATATAACTAGATCACCCCAGAAAGGTGCTAAAAAGACTGTAAGCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATAACTAGATCACCCCAGAAAGGTGCTAAAAAGACTGTAAGCATG  450

seq1  GAAACCATGTTCACTCGTGCTTTGGCTATGATGTATTAGTTAACTGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCATGTTCACTCGTGCTTTGGCTATGATGTATTAGTTAACTGGAAA  500

seq1  AACTTAAACTCAGGACACTTTCAAAGCTGGTGGTTTTGGAAACCCTGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAACTCAGGACACTTTCAAAGCTGGTGGTTTTGGAAACCCTGACC  550

seq1  TCCTTTGGTATTGCTGACTGAGCAGATGTTCAGGGAAATCACTTGGCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGGTATTGCTGACTGAGCAGATGTTCAGGGAAATCACTTGGCACA  600

seq1  ATTTAGTCAAACCAAGTCTATATAAGTCTATGATTCAGTAACTCTACTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTCAAACCAAGTCTATATAAGTCTATGATTCAGTAACTCTACTAT  650

seq1  AAATGTACATGGAAAAACAAGTGGTACGTGCTGATCCATCTCTACCCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTACATGGAAAAACAAGTGGTACGTGCTGATCCATCTCTACCCATA  700

seq1  TATATATATATATATATATATATATATATATATATATATATGTGTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATATATATATATATGTGTG  746

seq1: chr18_40150866_40151921
seq2: B6Ng01-128M20.g_128_1192 (reverse)

seq1  AGAGAGGAGACCAAAGCAGTGCAAGA-GCCAGAGGGGATGGAGGACACCA  49
      ||||||||| ||||||||||| |||| |||||||||||||||||| ||| 
seq2  AGAGAGGAGCCCAAAGCAGTGAAAGAGGCCAGAGGGGATGGAGGA-ACC-  48

seq1  AGCAAACAAGAC-TCTGTAAATCAACATTAGCAAAGCTCATAAGAACTCA  98
      |||||||||||| |||||||||| ||||||||||||||||| ||||||||
seq2  AGCAAACAAGACTTCTGTAAATCCACATTAGCAAAGCTCATTAGAACTCA  98

seq1  CGGAGACTGAAGCAGCATACA-CAAGACCCACACAGACCTGTATC-AGGC  146
      |||||||||||||||||| || ||||| ||||||||||||||||| ||||
seq2  CGGAGACTGAAGCAGCATTCACCAAGA-CCACACAGACCTGTATCAAGGC  147

seq1  CCTCTGGGTATGTATGAAGGCTTCCAGCTCAGTGTTTTCTGGGATTCCTG  196
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCTCTGGGTATGTATGAAGGCTTCCAGCTCAGTGGTTTCTGGGATTCCTG  197

seq1  AGTGTGTGAATAAGTTGGGTTCTTTTCCTTTGTTCATTTGTCTTGTTCAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTGAATAAGTTGGGTTCTTTTCCTTTGTTCATTTGTCTTGTTCAG  247

seq1  CTT-CAATGT-GGTAGTTTTTGTTTTACCTC-ATTAT-ATCTTA-TTTAA  291
      ||| |||||| || ||||||||||||||||| ||||| |||||| |||||
seq2  CTTCCAATGTGGGAAGTTTTTGTTTTACCTCAATTATAATCTTATTTTAA  297

seq1  GAAAAT-AAATGTATGATGAATGAATAAATGAATGAATG-AATGAATGAA  339
      |||||| |||||||||||||||||||||||||||||||| ||||||||||
seq2  GAAAATAAAATGTATGATGAATGAATAAATGAATGAATGAAATGAATGAA  347

seq1  TGAATGAAAACATAGCCACTAGGGTAAATATT-AACAATTGAACTGTTAT  388
      |||||||||||||||||||||||||||||||| ||||||  |||||||||
seq2  TGAATGAAAACATAGCCACTAGGGTAAATATTAAACAATGAAACTGTTAT  397

seq1  TAATACCTGCTTGCAGAAGGAAACAATGTTCTCCAATGAAATGACACTAG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACCTGCTTGCAGAAGGAAACAATGTTCTCCAATGAAATGACACTAG  447

seq1  TTATATCAACCACTTCAGGCCTCATGTTCAGGAGTAGTTAAACAATATAA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCAACCACTTCAGGCCTCATGTTCAGGAGTAGTTAAACAATATAA  497

seq1  TTTGGACAACCAAGATTTTTATGTGTGATATTCTTTTGGTCACAGTTTGG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGACAACCAAGATTTTTATGTGTGATATTCTTTTGGTCACAGTTTGG  547

seq1  TGGGTTTTCTCCTTCACCCCCTGCTTCTTTTTTTTTTCCTGTTCTTTTCT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTTCTCCTTCACCCCCTGCTTCTTTTTTTTTTCCTGTTCTTTTCT  597

seq1  TTTAGAGTGTTGTTTTATTTTGGTTTTTTAATTGTTTTTTTGGTTTGGGG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGTGTTGTTTTATTTTGGTTTTTTAATTGTTTTTTTGGTTTGGGG  647

seq1  GTGTTTGTTTTTATATTTTTGCTTGTTTGGTTTTGAGAAAGAACTACATG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGTTTTTATATTTTTGCTTGTTTGGTTTTGAGAAAGAACTACATG  697

seq1  GGTAGGGAGTAGAGAGGATCTGGAAGGACTTGGAGAAGGGGAAGACTATG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGGAGTAGAGAGGATCTGGAAGGACTTGGAGAAGGGGAAGACTATG  747

seq1  ATCAGTATATATTTAAATTTAAAATTGCTTTAAATAAAATAAATATAATA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTATATATTTAAATTTAAAATTGCTTTAAATAAAATAAATATAATA  797

seq1  AAAAGAAGAAAACAGAAAACACAAGAGTTTTTGAACAGCAGAACTTAAGA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGAAAACAGAAAACACAAGAGTTTTTGAACAGCAGAACTTAAGA  847

seq1  ATTCAGTGGCCAACATTATGAACTAACCAGTACCCCAGAGCTCTTGACTC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTGGCCAACATTATGAACTAACCAGTACCCCAGAGCTCTTGACTC  897

seq1  TAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAG  947

seq1  AGGCAGGCCCATTGGACACGCAAACTTTATATGCCCCAGTACAGGGGAAC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGCCCATTGGACACGCAAACTTTATATGCCCCAGTACAGGGGAAC  997

seq1  GCCAGAGCCAAAAAGGGGGAGTGGGTGGGTAGGGGAGTGGGGGTGGGTGG  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGCCAAAAAGGGGGAGTGGGTGGGTAGGGGAGTGGGGGTGGGTGG  1047

seq1  GTATGGGGGACTTTTGGT  1056
      ||||||||||||||||||
seq2  GTATGGGGGACTTTTGGT  1065