BAC Information

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BAC

Clone NameB6Ng01-129H02
Chromosome18 (Build37)
Map Location 68,080,061 - 68,218,579
singlet/doubletdoublet
Overlap geneD18Ertd653e
Upstream geneGnal, Chmp1b, Mppe1, Impa2, B430212C06Rik, Cidea, Tubb6, Afg3l2, Slmo1, Spire1, Cep76, Tnfsf5ip1, Ptpn2, Seh1l, LOC667939
Downstream gene4933403F05Rik, Rnmt, Mc5r, Mc2r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129H02.bB6Ng01-129H02.g
ACCDH931024DH931025
length207972
definitionDH931024|Mus musculus domesticus DNA, BAC clone: B6Ng01-129H02, 5' end.DH931025|Mus musculus domesticus DNA, BAC clone: B6Ng01-129H02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,218,373 - 68,218,579)(68,080,061 - 68,081,038)
sequence
gaattctaccgtgacattaccagaatatatcaatgctggttcctttaaaa
cccaatgtgacaacggatttttactgaggcagatgtgcaggaaagaaagc
taagtgctccttatccaacttacttagctcctctacccaaagggctgatg
gttgaaacttgaacaaggaccaagccaactaaagattagagagaagagga
gggcggg
gaattctatgttctagtgaatgcatagagcgtgcaggtgtgggctgggct
cttactgcacattttccctgcccaggaacaatctgaaatgtggcttcgta
gtttgtgaatgtgtttttagcatatgtgaatggtgccatacagtatatgt
tgctcacgtcttgcccatgcttccccgtgaagaaagaaagatttcagctg
ctcttgacgttttctttctttcttttttttctttgaaaaaagatgtttct
taaacaatcttaattgtcataaaatgattaaaatgggttttaaaaattaa
ggcttttctctttctgtggattgccagacaatgtaaaaataatatcaatc
aaccctgatgaacgctttgttcctaagttaactttcataaattcctaagt
tattttataatttaagataaaaaattggacaataaatgataattaatacc
catgtgtactgacatacactgaccaggtatacaataatctagttgagtgg
ttacgcaaaaaatatcccagttaaagcataaattttgactttagcatttt
aatgtcattatttctccacactgtcatgatttccctaaaactgaaatagc
ctgatacaggaacgctaactttgggactctatatacccagagggatgact
gacttggctggcaattagtctgattatatgtttttttaaatgctctaaag
tgaattatcaaatgattcagaattacatggcatgcagtatccaaaattat
ggctctgatgcatttagatttacattaaaggaagttttctttcttttcaa
acatcaatttttccattcatccaatttttaaaattatttttttgtgtgtc
aagcacatttctccaactcaaatatgcccaggcaaatgaaaacacagctc
agtaatatgaatatatgctgtgcacttgattggcagatctacgctacact
acatctcacatctatgagaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_68218373_68218579
seq2: B6Ng01-129H02.b_46_252 (reverse)

seq1  CCCGCCCTCCTCTTCTCTCTAATCTTTAGTTGGCTTGGTCCTTGTTCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCCCTCCTCTTCTCTCTAATCTTTAGTTGGCTTGGTCCTTGTTCAAG  50

seq1  TTTCAACCATCAGCCCTTTGGGTAGAGGAGCTAAGTAAGTTGGATAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACCATCAGCCCTTTGGGTAGAGGAGCTAAGTAAGTTGGATAAGGA  100

seq1  GCACTTAGCTTTCTTTCCTGCACATCTGCCTCAGTAAAAATCCGTTGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTAGCTTTCTTTCCTGCACATCTGCCTCAGTAAAAATCCGTTGTCA  150

seq1  CATTGGGTTTTAAAGGAACCAGCATTGATATATTCTGGTAATGTCACGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGTTTTAAAGGAACCAGCATTGATATATTCTGGTAATGTCACGGT  200

seq1  AGAATTC  207
      |||||||
seq2  AGAATTC  207

seq1: chr18_68080061_68081038
seq2: B6Ng01-129H02.g_68_1039

seq1  GAATTCTATGTTCTAGTGAATGCATAGAGCGTGCAGGTGTGGGCTGGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGTTCTAGTGAATGCATAGAGCGTGCAGGTGTGGGCTGGGCT  50

seq1  CTTACTGCACATTTTCCCTGCCCAGGAACAATCTGAAATGTGGCTTCGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGCACATTTTCCCTGCCCAGGAACAATCTGAAATGTGGCTTCGTA  100

seq1  GTTTGTGAATGTGTTTTTAGCATATGTGAATGGTGCCATACAGTATATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGAATGTGTTTTTAGCATATGTGAATGGTGCCATACAGTATATGT  150

seq1  TGCTCACGTCTTGCCCATGCTTCCCCGTGAAGAAAGAAAGATTTCAGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACGTCTTGCCCATGCTTCCCCGTGAAGAAAGAAAGATTTCAGCTG  200

seq1  CTCTTGACGTTTTCTTTCTTTCTTTTTTTTCTTTGAAAAAAGATGTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGACGTTTTCTTTCTTTCTTTTTTTTCTTTGAAAAAAGATGTTTCT  250

seq1  TAAACAATCTTAATTGTCATAAAATGATTAAAATGGGTTTTAAAAATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAATCTTAATTGTCATAAAATGATTAAAATGGGTTTTAAAAATTAA  300

seq1  GGCTTTTCTCTTTCTGTGGATTGCCAGACAATGTAAAAATAATATCAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTCTCTTTCTGTGGATTGCCAGACAATGTAAAAATAATATCAATC  350

seq1  AACCCTGATGAACGCTTTGTTCCTAAGTTAACTTTCATAAATTCCTAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGATGAACGCTTTGTTCCTAAGTTAACTTTCATAAATTCCTAAGT  400

seq1  TATTTTATAATTTAAGATAAAAAATTGGACAATAAATGATAATTAATACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATAATTTAAGATAAAAAATTGGACAATAAATGATAATTAATACC  450

seq1  CATGTGTACTGACATACACTGACCAGGTATACAATAATCTAGTTGAGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTACTGACATACACTGACCAGGTATACAATAATCTAGTTGAGTGG  500

seq1  TTACGCAAAAAATATCCCAGTTAAAGCATAAATTTTGACTTTAGCATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGCAAAAAATATCCCAGTTAAAGCATAAATTTTGACTTTAGCATTTT  550

seq1  AATGTCATTATTTCTCCACACTGTCATGATTTCCCTAAAACTGAAATAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCATTATTTCTCCACACTGTCATGATTTCCCTAAAACTGAAATAGC  600

seq1  CTGATACAGGAACGCTAACTTTGGGACTCTATATACCCAGAGGGATGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATACAGGAACGCTAACTTTGGGACTCTATATACCCAGAGGGATGACT  650

seq1  GACTTGGCTGGCAATTAGTCTGATTATATGTTTTTTTAAATGCTCTAAGG  700
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GACTTGGCTGGCAATTAGTCTGATTATATGTTTTTTTAAATGCTCTAAAG  700

seq1  TGAATTATCAAATGATTCAGAATTACATGGCATGCAGTATCCAAAATTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTATCAAATGATTCAGAATTACATGGCATGCAGTATCCAAAATTAT  750

seq1  GGCTCTGATGCATTTAGATTTACATT-AAGGAAGTTTTCTTTCTTTTCAA  799
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGCTCTGATGCATTTAGATTTACATTAAAGGAAGTTTTCTTTCTTTTCAA  800

seq1  ACATCAATTTTTCCATTCATCCAATTTTTAAAAATTATTTTTTGTGTGTC  849
      ||||||||||||||||||||||||||||||||| |  |||||||||||||
seq2  ACATCAATTTTTCCATTCATCCAATTTTTAAAATTATTTTTTTGTGTGTC  850

seq1  AAGCACATTTCTCCAACTCAAATATGCCCAGGCAAATGAAAACACAGCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACATTTCTCCAACTCAAATATGCCCAGGCAAATGAAAACACAGCTC  900

seq1  AGTTAATATGAATATATGCTGTGCACCTTGATTGGGCAGATCTACCGCTA  949
      || |||||||||||||||||||||| ||||||| |||||||||| |||||
seq2  AG-TAATATGAATATATGCTGTGCA-CTTGATT-GGCAGATCTA-CGCTA  946

seq1  CACTACCATCTTCCACATCTATGAGACCC  978
      ||||| |||||  ||||||||||||||||
seq2  CACTA-CATCT--CACATCTATGAGACCC  972