BAC Information

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BAC

Clone NameB6Ng01-130I13
Chromosome18 (Build37)
Map Location 79,160,391 - 79,340,844
singlet/doubletdoublet
Overlap geneSetbp1
Upstream gene5430411K18Rik, Cd33l3, Slc14a1, Slc14a2, EG620155
Downstream geneLOC100039242, LOC100039250, LOC383311, LOC433204, LOC545267, LOC100040632, LOC620963, LOC100040604, LOC620692, LOC100040593, LOC639825, Pard6g, Zfp508
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130I13.bB6Ng01-130I13.g
ACCDH931822DH931823
length680265
definitionDH931822|Mus musculus domesticus DNA, BAC clone: B6Ng01-130I13, 5' end.DH931823|Mus musculus domesticus DNA, BAC clone: B6Ng01-130I13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,160,391 - 79,161,070)(79,340,576 - 79,340,844)
sequence
gaattcactctcattgcctctcagtactgtgtgaccagcagtgtgtacac
tctcgattagctatgtactgttttctttttaaaagaaggtgtggcactgt
agcccaggctggacttcacgatgtagccttaaagttcaagagctacaggt
ataagccactaccaaagcttgcatttgctatgttgttttttgttgtgagg
gaggggtgcagaagtagccgtggatactcttgcatgtgtgaaggttggag
gaagttggcaagtgtcctgtttggtcactttctgctttatttgcagtggc
acagggtctagtgctgatctcagaagtaggctggcaagaatcttgtctct
ggctctcaagagtgcaggggttaaatgtgctaactaggccaaggccagct
tttgacttgagtgctggaggatcaaatccaggcgctcctacatcctaagc
catggatacttctcgccacattctctctccagccctctccccatattctt
tggtttggttttcaattctgatgttattcaagatctttcccttcctgtcc
tccttctttcagttttcttagtctctgtcatttaaaatattgtttcatac
aatgctcttttgtttgatcttgtgtttcccctcctgaccacccctcctag
caacgttatgttcctgtcacaaactaaccc
acctccataaaaaaaaaacaatagaatgaaagaatttcacaaaagttcct
aaatggctaaagtataataaaatgatgatttttgagccctacattatttg
aagatagccctatgtagaaatgtctgatttttttctacttgggttttata
ggaagacactgtttaataacaagttgaaactccttttatcatttagagat
attttttgggacataaaatattttatttatttgggtaaaaaaaaatacgt
gtaggggtagagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_79160391_79161070
seq2: B6Ng01-130I13.b_42_721

seq1  GAATTCACTCTCATTGCCTCTCAGTACTGTGTGACCAGCAGTGTGTACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTCATTGCCTCTCAGTACTGTGTGACCAGCAGTGTGTACAC  50

seq1  TCTCGATTAGCTATGTACTGTTTTCTTTTTAAAAGAAGGTGTGGCACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGATTAGCTATGTACTGTTTTCTTTTTAAAAGAAGGTGTGGCACTGT  100

seq1  AGCCCAGGCTGGACTTCACGATGTAGCCTTAAAGTTCAAGAGCTACAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGGCTGGACTTCACGATGTAGCCTTAAAGTTCAAGAGCTACAGGT  150

seq1  ATAAGCCACTACCAAAGCTTGCATTTGCTATGTTGTTTTTTGTTGTGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCCACTACCAAAGCTTGCATTTGCTATGTTGTTTTTTGTTGTGAGG  200

seq1  GAGGGGTGCAGAAGTAGCCGTGGATACTCTTGCATGTGTGAAGGTTGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGTGCAGAAGTAGCCGTGGATACTCTTGCATGTGTGAAGGTTGGAG  250

seq1  GAAGTTGGCAAGTGTCCTGTTTGGTCACTTTCTGCTTTATTTGCAGTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGGCAAGTGTCCTGTTTGGTCACTTTCTGCTTTATTTGCAGTGGC  300

seq1  ACAGGGTCTAGTGCTGATCTCAGAAGTAGGCTGGCAAGAATCTTGTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTCTAGTGCTGATCTCAGAAGTAGGCTGGCAAGAATCTTGTCTCT  350

seq1  GGCTCTCAAGAGTGCAGGGGTTAAATGTGCTAACTAGGCCAAGGCCAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCAAGAGTGCAGGGGTTAAATGTGCTAACTAGGCCAAGGCCAGCT  400

seq1  TTTGACTTGAGTGCTGGAGGATCAAATCCAGGCGCTCCTACATCCTAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTTGAGTGCTGGAGGATCAAATCCAGGCGCTCCTACATCCTAAGC  450

seq1  CATGGATACTTCTCGCCACATTCTCTCTCCAGCCCTCTCCCCATATTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATACTTCTCGCCACATTCTCTCTCCAGCCCTCTCCCCATATTCTT  500

seq1  TGGTTTGGTTTTCAATTCTGATGTTATTCAAGATCTTTCCCTTCCTGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGGTTTTCAATTCTGATGTTATTCAAGATCTTTCCCTTCCTGTCC  550

seq1  TCCTTCTTTCAGTTTTCTTAGTCTCTGTCATTTAAAATATTGTTTCATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTTTCAGTTTTCTTAGTCTCTGTCATTTAAAATATTGTTTCATAC  600

seq1  AATGCTC-TTTGTTTGATCTTGTGTTTCCCCTCCTGACCACCCCTCCCCA  649
      ||||||| ||||||||||||||||||||||||||||||||||||| || |
seq2  AATGCTCTTTTGTTTGATCTTGTGTTTCCCCTCCTGACCACCCCT-CCTA  649

seq1  GCCAACGTTATG-TCCTGCCACAAACAAACCC  680
      | |||||||||| ||||| ||||||| |||||
seq2  G-CAACGTTATGTTCCTGTCACAAACTAACCC  680

seq1: chr18_79340576_79340844
seq2: B6Ng01-130I13.g_81_337 (reverse)

seq1  TTTCTCTACCCCTAACACTGTATTCTTTTTTTACACAAACTACATTAAAA  50
      ||||||||||||| |||| ||||| ||||||||| |||| || | |||||
seq2  TTTCTCTACCCCT-ACAC-GTATT-TTTTTTTACCCAAA-TA-AATAAAA  45

seq1  TATTTTTATGTACCATATAAATATCTCTAAATGATACAAGGATGTTTCTA  100
      || |||||||| ||| | |||||||||||||||||| ||||| ||||| |
seq2  TA-TTTTATGTCCCA-AAAAATATCTCTAAATGATAAAAGGA-GTTTC-A  91

seq1  GCTTGTGTATTTAACAGTGTCTTCCTATTAAACCCAAGTAGGAAAAAAAT  150
       ||||| |||| |||||||||||||||| ||||||||||| |||||||||
seq2  ACTTGT-TATTAAACAGTGTCTTCCTATAAAACCCAAGTA-GAAAAAAAT  139

seq1  CAGTACATTTCTACATAGGGCTATCTTCAAATAATGTAGGGCTCAAAAAT  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAG-ACATTTCTACATAGGGCTATCTTCAAATAATGTAGGGCTCAAAAAT  188

seq1  CATCATTTTATTATACTTTAGCCATTTAGGAACTTTTGTGAAATTCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTTTATTATACTTTAGCCATTTAGGAACTTTTGTGAAATTCTTTC  238

seq1  ATTCTATTGTTTTTTTTTT  269
      |||||||||||||||||||
seq2  ATTCTATTGTTTTTTTTTT  257