BAC Information

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BAC

Clone NameB6Ng01-130N03
Chromosome18 (Build37)
Map Location 70,220,624 - 70,355,839
singlet/doubletdoublet
Overlap geneRab27b
Upstream geneLOC100043380, EG225681, Tcf4, Ccdc68
Downstream gene2310002L13Rik, 4930503L19Rik, Stard6, Poli, Mbd2, EG668032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130N03.bB6Ng01-130N03.g
ACCDH932037DH932038
length1,111998
definitionDH932037|Mus musculus domesticus DNA, BAC clone: B6Ng01-130N03, 5' end.DH932038|Mus musculus domesticus DNA, BAC clone: B6Ng01-130N03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,220,624 - 70,221,753)(70,354,827 - 70,355,839)
sequence
gaattccacaatgaaaaaggtgtgattggtgacactgtgtctcagctctt
gtttcttagcagtaaatgctgcgctcctctgtccacaaagtgtttagtag
atggtaaacccaacattcggcatctgctttgacttttaagctttctcttt
tattatagaaaaatactgatctttctctaatagtaataaagtataaaaat
taagctagataattacaatgaataacagagtgggctctttacagaacaga
aaaaaaaaaaaacatcaccaccaccaacaacaaaaaagcaatgacccaga
agtagggaacagtgatcactattagcagttttcagaaaatgaaaaagaca
tcacctatgcacctgtcagtatgggtattgccaggggttgatgaggatac
agaacaagcaaaatattcatttcttgctagtagggggtgtaaacaggtct
aatttaggaaatggtacccaactggatagaccctgttctaaatgcatagg
catggtacctgaaactttacaataaatctaccagaaccaataactttaca
ataaatctaccaatttattgcatctgtctcttagccacaaatttaaaagt
tctcctaatatccattaagaatacaattaaaagtaatgtatattcacaca
acagaattttactcagcagcaagaatgaactctgacagcaatgagcttag
tgaattgcaccagcataattctgaataactcaattcttccacgataatat
attctgtggggtttcatacttaagaatgttagagtccggcaggtctaatc
cataacattacaaatcatgacagaggtcaccctgtggttatttagatagt
gactgagaagtttcactggggtttctaataatgcttagtttcctcattca
tgttatatgaattatgtgtttcttgtgtgccatccatccagctttatggt
ttgcatacatttgtatatttctttgtctttcatcttaaaatgcaaaatac
acaaatgatattcaaatgagacgaggatgaaaggggtaaagaaagtgaag
aagctgggctagtaaaagaatgctgcttaacagtcctcttaactcagact
gattcatcacg
gaattcttggtaatttgaactcaggttctctggaagagcgacaagcattt
ttaactgctgagccatctcaacagcctttaaaatactttttaaatggaaa
agcaaattaaaaaaaatttcttttcatgattttaccccccaggaagctca
gggcaatccaacctgtatatgaacacacatgaaaaagtgatactaaatgc
aaactgtccatcagaataaattactgtactttcttagaagtacagtaaaa
ataagataggcacaaattaggtctaagttcaaagcactttagggactaat
tgccttttctgtttccatgtgagagaatttaatggagttactattttttt
ttaagaaattcagtttataattagcaagtaagatggtgtctgtcaaagac
ataactatcagccaacctcatccatgatgggttctcattggttcattatt
gatttcataagcatgtatcccagcatgcagtgttctcccaatactgagag
cccacaaactgatatacaagtgatggtaggcagtgcttgcctgtcaggga
atggtgagcaaaggcaagacaaagagtgtgctcgatagagggcaccaggt
atttgaatacgcatgttgttggtgtcttagtcaggggttctattcctgca
aacatcatgatcaagaagcaagttggggaggaaagggtttatttggctta
cacttccacattgctgttcatcaccaaaggaagtcaggactggaactcac
acagacagaaccttgagcagagctgatgcaaagccatgaaggtgctgctt
actgccttgcttcccgtggcttgctcagcttgctttctaaagaacccagg
actaccagcaaggaatacaccccccacaatgggctgggctctccactcct
gaccataattgaagaaatgccttacagctgatcctcaagggaggcacttc
tccttggttacttcaactttcggttcaagtgatacaacaaacagccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_70220624_70221753
seq2: B6Ng01-130N03.b_47_1157

seq1  GAATTCCACAATGAAAAAGGTGTGATTGGTGACACTGTGTCTCAGCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAATGAAAAAGGTGTGATTGGTGACACTGTGTCTCAGCTCTT  50

seq1  GTTTCTTAGCAGTAAATGCTGCGCTCCTCTGTCCACAAAGTGTTTAGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTAGCAGTAAATGCTGCGCTCCTCTGTCCACAAAGTGTTTAGTAG  100

seq1  ATGGTAAACCCAACATTCGGCATCTGCTTTGACTTTTAAGCTTTCTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAAACCCAACATTCGGCATCTGCTTTGACTTTTAAGCTTTCTCTTT  150

seq1  TATTATAGAAAAATACTGATCTTTCTCTAATAGTAATAAAGTATAAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAGAAAAATACTGATCTTTCTCTAATAGTAATAAAGTATAAAAAT  200

seq1  TAAGCTAGATAATTACAATGAATAACAGAGTGGGCTCTTTACAGAACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTAGATAATTACAATGAATAACAGAGTGGGCTCTTTACAGAACAGA  250

seq1  AAAAAAAAAAAACATCACCACCACCAACAACAAAAAAGCAATGACCCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAACATCACCACCACCAACAACAAAAAAGCAATGACCCAGA  300

seq1  AGTAGGGAACAGTGATCACTATTAGCAGTTTTCAGAAAATGAAAAAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGGAACAGTGATCACTATTAGCAGTTTTCAGAAAATGAAAAAGACA  350

seq1  TCACCTATGCACCTGTCAGTATGGGTATTGCCAGGGGTTGATGAGGATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTATGCACCTGTCAGTATGGGTATTGCCAGGGGTTGATGAGGATAC  400

seq1  AGAACAAGCAAAATATTCATTTCTTGCTAGTAGGGGGTGTAAACAGGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAGCAAAATATTCATTTCTTGCTAGTAGGGGGTGTAAACAGGTCT  450

seq1  AATTTAGGAAATGGTACCCAACTGGATAGACCCTGTTCTAAATGCATAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGGAAATGGTACCCAACTGGATAGACCCTGTTCTAAATGCATAGG  500

seq1  CATGGTACCTGAAACTTTACAATAAATCTACCAGAACCAATAACTTTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTACCTGAAACTTTACAATAAATCTACCAGAACCAATAACTTTACA  550

seq1  ATAAATCTACCAATTTATTGCATCTGTCTCTTAGCCACAAATTTAAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCTACCAATTTATTGCATCTGTCTCTTAGCCACAAATTTAAAAGT  600

seq1  TCTCCTAATATCCATTAAGAATACAATTAAAAGTAATGTATATTCACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTAATATCCATTAAGAATACAATTAAAAGTAATGTATATTCACACA  650

seq1  ACAGAATTTTACTCAGCAGCAAGAATGAACTCTGACAGCAATGAGCTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATTTTACTCAGCAGCAAGAATGAACTCTGACAGCAATGAGCTTAG  700

seq1  TGAATTGCACCAGCATAATTCTGAATAACTCAATTCTTCCACGATAATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTGCACCAGCATAATTCTGAATAACTCAATTCTTCCACGATAATAT  750

seq1  ATTCTGTGGGGTTTCATACTTAAGAATGTTAGAGTCCGGCAGGTCTAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTGGGGTTTCATACTTAAGAATGTTAGAGTCCGGCAGGTCTAATC  800

seq1  CATAACATTACAAATCATGACAGAGGTCACCCTGTGGTTATTTAGATAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACATTACAAATCATGACAGAGGTCACCCTGTGGTTATTTAGATAGT  850

seq1  GACTGAGAAGTTTCACTGGGGTTTCTAATAATGCTTAGTTTCCTCATTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGAAGTTTCACTGGGGTTTCTAATAATGCTTAGTTTCCTCATTCA  900

seq1  TGTTATATGAATTATGTGTTTCTTGTGTGCCATCCATCCAGCTTTATGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATATGAATTATGTGTTTCTTGTGTGCCATCCATCCAGCTTTATGGT  950

seq1  TTGCATACATTTGTATATTTCTTTGTCTTTCATCTTAAAATGCAAAATAA  1000
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTGCATACATTTGTATATTTCTTTGTCTTTCATCTTAAAATGCAAAAT-A  999

seq1  CAACAAAATGATATTCAAATGAGACGAGGAAGGAAAGGGGTAAAGGAAAA  1050
      ||   |||||||||||||||||||||||| | |||||||||||||  |||
seq2  CA--CAAATGATATTCAAATGAGACGAGG-ATGAAAGGGGTAAAG--AAA  1044

seq1  GTTGAAGGACAGGCTGGGCTAGTAGAGAGAATGCTTGCTTTAACAGTCAC  1100
      | |||||   | |||||||||||| | ||||||| ||| ||||||||| |
seq2  G-TGAAG---AAGCTGGGCTAGTA-AAAGAATGC-TGC-TTAACAGTC-C  1086

seq1  TCTTAACACTCAAGACATGATTCATTCACG  1130
      ||||||| |   |||| ||||||| |||||
seq2  TCTTAACTC---AGAC-TGATTCA-TCACG  1111

seq1: chr18_70354827_70355839
seq2: B6Ng01-130N03.g_70_1067 (reverse)

seq1  CTGGCTGGTTTTGTTGTATCAACTTGACACG-AAGTTGAAGTTACCACAG  49
      |||||||  ||||||||||| ||||||  || |||||||||| ||||  |
seq2  CTGGCTG--TTTGTTGTATC-ACTTGAACCGAAAGTTGAAGTAACCAAGG  47

seq1  AGGAAGGTGCCTCCCTTGAGATCCAGCTGTAAGGCATTTCCTCAATTATT  99
      ||  | ||||||||||||||   ||||||||||||||||| ||||||| |
seq2  AG--AAGTGCCTCCCTTGAGGATCAGCTGTAAGGCATTTCTTCAATTA-T  94

seq1  GGTCAAGAGTGGGAGGGCCCAGCCCATTGTGGGTGGTGTTATCCCTTGGC  149
      ||||| |||| |||| ||||||||||||||||| |||| ||| |||| ||
seq2  GGTCAGGAGT-GGAGAGCCCAGCCCATTGTGGGGGGTG-TATTCCTT-GC  141

seq1  TGGTAGTCCTGGGTTCTATAAGAAAGCAAGCTGAGCAAGCCACGGGAAGC  199
      ||||||||||||||||| | ||||||||||||||||||||||||||||||
seq2  TGGTAGTCCTGGGTTCT-TTAGAAAGCAAGCTGAGCAAGCCACGGGAAGC  190

seq1  AAGGCAGTAAGCAGCACCCTCCATGGCCTCTGCATCAGCTCCTGCCTCCA  249
      |||||||||||||||| ||| ||||| || |||||||||| ||| ||| |
seq2  AAGGCAGTAAGCAGCA-CCTTCATGG-CTTTGCATCAGCT-CTG-CTCAA  236

seq1  GGTTCCTGTCCTGTGTGAGTTCCAGTCCTGACTTCCTTTGGTGATGAACA  299
      |||| |||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGTT-CTGT-CTGTGTGAGTTCCAGTCCTGACTTCCTTTGGTGATGAACA  284

seq1  GCAATGTGGAAGTGTAAGCCAAATAAACCCTTTCCTCCCCAACTTGCTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTGGAAGTGTAAGCCAAATAAACCCTTTCCTCCCCAACTTGCTTC  334

seq1  TTGATCATGATGTTTGCAGGAATAGAACCCCTGACTAAGACACCAACAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCATGATGTTTGCAGGAATAGAACCCCTGACTAAGACACCAACAAC  384

seq1  ATGCGTATTCAAATACCTGGTGCCCTCTATCGAGCACACTCTTTGTCTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGTATTCAAATACCTGGTGCCCTCTATCGAGCACACTCTTTGTCTTG  434

seq1  CCTTTGCTCACCATTCCCTGACAGGCAAGCACTGCCTACCATCACTTGTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCTCACCATTCCCTGACAGGCAAGCACTGCCTACCATCACTTGTA  484

seq1  TATCAGTTTGTGGGCTCTCAGTATTGGGAGAACACTGCATGCTGGGATAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTTTGTGGGCTCTCAGTATTGGGAGAACACTGCATGCTGGGATAC  534

seq1  ATGCTTATGAAATCAATAATGAACCAATGAGAACCCATCATGGATGAGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTATGAAATCAATAATGAACCAATGAGAACCCATCATGGATGAGGT  584

seq1  TGGCTGATAGTTATGTCTTTGACAGACACCATCTTACTTGCTAATTATAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGATAGTTATGTCTTTGACAGACACCATCTTACTTGCTAATTATAA  634

seq1  ACTGAATTTCTTAAAAAAAAATAGTAACTCCATTAAATTCTCTCACATGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATTTCTTAAAAAAAAATAGTAACTCCATTAAATTCTCTCACATGG  684

seq1  AAACAGAAAAGGCAATTAGTCCCTAAAGTGCTTTGAACTTAGACCTAATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAAAAGGCAATTAGTCCCTAAAGTGCTTTGAACTTAGACCTAATT  734

seq1  TGTGCCTATCTTATTTTTACTGTACTTCTAAGAAAGTACAGTAATTTATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTATCTTATTTTTACTGTACTTCTAAGAAAGTACAGTAATTTATT  784

seq1  CTGATGGACAGTTTGCATTTAGTATCACTTTTTCATGTGTGTTCATATAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGACAGTTTGCATTTAGTATCACTTTTTCATGTGTGTTCATATAC  834

seq1  AGGTTGGATTGCCCTGAGCTTCCTGGGGGGTAAAATCATGAAAAGAAATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGGATTGCCCTGAGCTTCCTGGGGGGTAAAATCATGAAAAGAAATT  884

seq1  TTTTTTAATTTGCTTTTCCATTTAAAAAGTATTTTAAAGGCTGTTGAGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAATTTGCTTTTCCATTTAAAAAGTATTTTAAAGGCTGTTGAGAT  934

seq1  GGCTCAGCAGTTAAAAATGCTTGTCGCTCTTCCAGAGAACCTGAGTTCAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGCAGTTAAAAATGCTTGTCGCTCTTCCAGAGAACCTGAGTTCAA  984

seq1  ATTACCAAGAATTC  1013
      ||||||||||||||
seq2  ATTACCAAGAATTC  998