BAC Information

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BAC

Clone NameB6Ng01-131J23
Chromosome18 (Build37)7 (Build37)
Map Location 43,291,862 - 43,293,04368,330,993 - 68,331,558
singlet/doubletsingletsinglet
Overlap geneLOC100042051
Upstream geneSh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27, Pou4f3, LOC100042767, LOC100042027, Tcerg1, Gpr151, LOC100042037, Ppp2r2b, LOC100042046
Downstream geneEG666594, Stk32a, Dpysl3, LOC100042074, LOC100042807, Jakmip2, Spink3, Scgb3a2, Gm94, Spink5, EG433178, LOC666969, EG433180, Spink12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131J23.bB6Ng01-131J23.g
ACCDH932632DH932633
length1,187898
definitionDH932632|Mus musculus domesticus DNA, BAC clone: B6Ng01-131J23, 5' end.DH932633|Mus musculus domesticus DNA, BAC clone: B6Ng01-131J23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(43,291,862 - 43,293,043)(68,330,993 - 68,331,558)
sequence
gaattccacagtccttctgctggatcttttctgtaataggacgataccca
agattgaaacatctgtgggaatgcataaaagctaaaaatatccagacatt
cctgaaacttgacctgcctaaaggctggcttcaagagtctcaactcagtg
aatgccagaagatatcattaaaactccatcaggctcttggaacagttgta
caggcatatttaacttttggacagacctgaatggaaaggcatttaattga
taaagttaagtatattataggagatcaaaaagagaaaatgttccctggtg
gattgaagacatgtgaaatgctcatggatttaattctagttcattcccct
ctgtcttgctttctggggtcaaggatcatttttgcacagctacatcaaga
atctcaactggaaggaatggttcaagaatatgttgtttgtacgtcccatc
atgtcttctgcattatattttgcaactgaggaacttatgaccactgtctc
ttctgctgtgttcccccattgctgaacaataattaaccttgctgctctca
agagacatggcttctagtgccccaaggaaagcaggttgactatgtgtgaa
ggtctcggggctgatagggtagccattgcattattattcattccaaagga
tacttgggtgcatcagacctttctgatctctctacatcttgtcgatgagg
agcctgtcactgcccaggcacagagcaattactctgatcttcctcagatg
gtgactgagcagtgaataaggttttccctctaagcttcatcaccagggaa
tcagagagtgatggcacattatatacatatacaatggcacaataaagtga
cacaagttttttgatccatatggaatttgaccaaaggaatcacaaaaatg
atcatctcatcagcattgtgataacctccatctgggaaatgaaacgtaga
ctcttgcccatggtcacatactagacttcatgcactggctatcttgctgc
ccatcaacagtctgagcacacatagtacaggaacatagaagagacatgtt
tttgattgcagaacttttctgaacattaatagaggaaggatcaagaattg
caaatgttaggaggatggttatgcattcacacaaaggaagtaccttattc
tttaacaaagaatttatttgtatgccttttattgcag
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatccaacgagatgatcatgtggtttttgtcttt
gagtttgtttatatagtggattacattgatggattttcgtatattaaacc
atccctgcattcctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgatcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtactttctacttctatcttgtgaaaaagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactatttataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctccctttttcagttctgattttgttaa
ttaggattttgtcccctgtgcccttttagtgagtctagctaagggtttat
ctatctttgttgattttctcaaagaaccaactcctcgtttggttaattct
ttgaatagttctcttgtttccacttggatgatttcacccctgagtttgat
tatttcctggcgctactcctcttgggggaatttgcctcctttttttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_43291862_43293043
seq2: B6Ng01-131J23.b_49_1235 (reverse)

seq1  CTGCAATATAAAGCCAT--CAATAAA-TCTTTGTTAAAAGAAT-AGGTAC  46
      |||||||| |||| |||   |||||| |||||||| ||||||| ||||||
seq2  CTGCAATA-AAAGGCATACAAATAAATTCTTTGTT-AAAGAATAAGGTAC  48

seq1  TTTTCCTATTGTGTG-ATGCATAACCATCCTCCT-ACATTTGCATTCTTT  94
        ||||| ||||||| |||||||||||||||||| ||||||||| |  ||
seq2  --TTCCT-TTGTGTGAATGCATAACCATCCTCCTAACATTTGCAATTCTT  95

seq1  GAT-CTTTCTCTATT-ATGTTCAGATA--GTCTGCAATCAAAAACATGTC  140
      ||| ||| ||||||| ||||||||| |   ||||||||||||||||||||
seq2  GATCCTTCCTCTATTAATGTTCAGAAAAGTTCTGCAATCAAAAACATGTC  145

seq1  TC-TCTATGTTCCTGTACTATGTGTGCTCAGACTGTTGATGGGCAGCAAG  189
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTATGTTCCTGTACTATGTGTGCTCAGACTGTTGATGGGCAGCAAG  195

seq1  ATAGCCAGTGCATGAAGTCTTAGTATGTGACCATGGGCAAGAGTCTACGT  239
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATAGCCAGTGCATGAAGTC-TAGTATGTGACCATGGGCAAGAGTCTACGT  244

seq1  TTCATTTCCCAGATGGAGGTTATCACAATGCTGATGAGATGATCATTTTT  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCCCAGATGGAGGTTATCACAATGCTGATGAGATGATCATTTTT  294

seq1  GTGATTCCTTTGGTCAAATTCCATATGGATCAAAAAACTTGTGTCACTTT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTCCTTTGGTCAAATTCCATATGGATCAAAAAACTTGTGTCACTTT  344

seq1  ATTGTGCCATTGTATATGTATATAATGTGCCATCACTCTCTGATTCCCTG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGCCATTGTATATGTATATAATGTGCCATCACTCTCTGATTCCCTG  394

seq1  GTGATGAAGCTTAGAGGGAAAACCTTATTCACTGCTCAGTCACCATCTGA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGAAGCTTAGAGGGAAAACCTTATTCACTGCTCAGTCACCATCTGA  444

seq1  GGAAGATCAGAGTAATTGCTCTGTGCCTGGGCAGTGACAGGCTCCTCATC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATCAGAGTAATTGCTCTGTGCCTGGGCAGTGACAGGCTCCTCATC  494

seq1  GACAAGATGTAGAGAGATCAGAAAGGTCTGATGCACCCAAGTATCCTTTG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGATGTAGAGAGATCAGAAAGGTCTGATGCACCCAAGTATCCTTTG  544

seq1  GAATGAATAATAATGCAATGGCTACCCTATCAGCCCCGAGACCTTCACAC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAATAATAATGCAATGGCTACCCTATCAGCCCCGAGACCTTCACAC  594

seq1  ATAGTCAACCTGCTTTCCTTGGGGCACTAGAAGCCATGTCTCTTGAGAGC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCAACCTGCTTTCCTTGGGGCACTAGAAGCCATGTCTCTTGAGAGC  644

seq1  AGCAAGGTTAATTATTGTTCAGCAATGGGGGAACACAGCAGAAGAGACAG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGTTAATTATTGTTCAGCAATGGGGGAACACAGCAGAAGAGACAG  694

seq1  TGGTCATAAGTTCCTCAGTTGCAAAATATAATGCAGAAGACATGATGGGA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATAAGTTCCTCAGTTGCAAAATATAATGCAGAAGACATGATGGGA  744

seq1  CGTACAAACAACATATTCTTGAACCATTCCTTCCAGTTGAGATTCTTGAT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACAAACAACATATTCTTGAACCATTCCTTCCAGTTGAGATTCTTGAT  794

seq1  GTAGCTGTGCAAAAATGATCCTTGACCCCAGAAAGCAAGACAGAGGGGAA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTGTGCAAAAATGATCCTTGACCCCAGAAAGCAAGACAGAGGGGAA  844

seq1  TGAACTAGAATTAAATCCATGAGCATTTCACATGTCTTCAATCCACCAGG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTAGAATTAAATCCATGAGCATTTCACATGTCTTCAATCCACCAGG  894

seq1  GAACATTTTCTCTTTTTGATCTCCTATAATATACTTAACTTTATCAATTA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTTTCTCTTTTTGATCTCCTATAATATACTTAACTTTATCAATTA  944

seq1  AATGCCTTTCCATTCAGGTCTGTCCAAAAGTTAAATATGCCTGTACAACT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTTTCCATTCAGGTCTGTCCAAAAGTTAAATATGCCTGTACAACT  994

seq1  GTTCCAAGAGCCTGATGGAGTTTTAATGATATCTTCTGGCATTCACTGAG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAAGAGCCTGATGGAGTTTTAATGATATCTTCTGGCATTCACTGAG  1044

seq1  TTGAGACTCTTGAAGCCAGCCTTTAGGCAGGTCAAGTTTCAGGAATGTCT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACTCTTGAAGCCAGCCTTTAGGCAGGTCAAGTTTCAGGAATGTCT  1094

seq1  GGATATTTTTAGCTTTTATGCATTCCCACAGATGTTTCAATCTTGGGTAT  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTTTTAGCTTTTATGCATTCCCACAGATGTTTCAATCTTGGGTAT  1144

seq1  CGTCCTATTACAGAAAAGATCCAGCAGAAGGACTGTGGAATTC  1182
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCTATTACAGAAAAGATCCAGCAGAAGGACTGTGGAATTC  1187

seq1: chr7_68330993_68331558
seq2: B6Ng01-131J23.g_399_966 (reverse)

seq1  AGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAA  50
      |||||||||||| |||||||| |||||||||||||| || ||||||||||
seq2  AGAAAAAAAGGAGGCAAATTCCCCCAAGAGGAGTAG-CGCCAGGAAATAA  49

seq1  TCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAA  100
      ||||||||||||||||||||| ||||||||||||||| ||||||||||||
seq2  TCAAACTCAGGGGTGAAATCATCCAAGTGGAAACAAG-AGAACTATTCAA  98

seq1  AGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAAC-AAGATAG  149
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAAGATAG  148

seq1  ATAAACCCTTAGCTAGACTCACT-AGAGGGCACA-GAGACAAAATCCTAA  197
      ||||||||||||||||||||||| | |||||||| | |||||||||||||
seq2  ATAAACCCTTAGCTAGACTCACTAAAAGGGCACAGGGGACAAAATCCTAA  198

seq1  TTAACAAAATCAGAACTG-AAAAGGGAGACATAACAACAGATCCTGAAGA  246
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTAACAAAATCAGAACTGAAAAAGGGAGACATAACAACAGATCCTGAAGA  248

seq1  AATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAAC  298

seq1  TGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCA  348

seq1  AAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAA  398

seq1  AGAAATAGAAGCAGTTATAAATAGTCTCCCAGCCAAAAAAAGCCCAGGAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAGAAGCAGTTATAAATAGTCTCCCAGCCAAAAAAAGCCCAGGAC  448

seq1  CAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATT  498

seq1  CCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAAGTACTCTACC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAAGTACTCTACC  548

seq1  CAACTCATTTTATGAAGCCA  566
      ||||||||||||||||||||
seq2  CAACTCATTTTATGAAGCCA  568