BAC Information

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BAC

Clone NameB6Ng01-131L21
Chromosome18 (Build37)
Map Location 37,063,271 - 37,064,122
singlet/doubletsinglet
Overlap genenone
Upstream genePsd2, LOC100042150, LOC100041531, Pura, 0610010O12Rik, Pfdn1, Hbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2
Downstream geneEG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5, Diap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131L21.bB6Ng01-131L21.g
ACCDH932722DH932723
length1,234852
definitionDH932722|Mus musculus domesticus DNA, BAC clone: B6Ng01-131L21, 5' end.DH932723|Mus musculus domesticus DNA, BAC clone: B6Ng01-131L21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgccagactttcaaagaagagctaccgccaatactcctcaaatt
atcctacaaaatagaaatagaagaaacatttccaaattcattttatgagg
ccacagtcaccctgacacccaaatcacatgaatattcaacaaagaaagag
aattacaaaccaatattcttcatgaacatagatacaaaaatactcaataa
aatacttgcaacctaaattcactaatacatcaaaaaaaacctatctacca
ggatcaagaaatcctataaatgcagaaatatttaagcacatgaaaatcaa
tcagtgtaatttatatccaccatataaaacaaagtgtaagacaaaaacca
cataaatatctcattagatgctgaaaaagtctgacaaaatctgatactac
tttatgataaaagtcttagagatattagggataaaagggacatacttaaa
tatcattgtgacaatttgaagcaagctgatagccaacatcaaattaaatg
gagagaaattcaaagcaatttcactaaaatcaggagcaagtcaagactgt
ccactctatatatatctattcaatatagtacttaaagttctagatagagc
aataaaacaactgaaggagatcaaagggatacaaatggaaagaaagaaga
ttatacttttatttgcagatgctatgatagtatacataagcagccccaaa
aatcctaccagaaaactcctaaaactgataaacacctttaggagagtggc
tggataaagactaacaaaaattcagtggctctcctgagctgcaaataata
taaaatatattgttgtaactctaaccaagcaaatgaaagacttctataac
aagaccttcaagtctttgaaaaacaaaattgaagaaaatatcagaaaatg
gaaagatctcccatgctcatggatcagtaagattaacagtaaaaatatcc
atctatagcatctatagattcaatgcatcctcatcaaattcaaatcaatt
ctttacagactttgaaagcaatactcatcttcatgtgaaaatcatactca
tctcagcatgtagaaatgcaatggatcatatctatcaccctgccaaactc
agtgaaatagatcaagactcaatttagcagaataactgaattcataacta
caggtaactaaaaagaaaatcctacaataagattcaaggatacattcctg
aattcagtctatcatacaggtgcttatggtatta
gaattcatactggttaagaaaatctacagaaataataaaaatggaacatc
tattaaactagttgaatttgttctgaaaatgagagaattcatactgtgta
tttttatgaatggtaggaatgtaggaaatcctctattgtatgtgataatt
tattaaatattaaatcaattatatcagtgagaaaagtaatgaatttaacg
tacatggatcctcagggttttttttttattatgtagtagagaattcatac
tgataaaaagacttgtagatgtaagaaatacaataacattttcatgaact
gtaggtaaatattaaacactatagcattcacacatttcaaaaattccctg
attgtatgcaatacaataaagtctttatatgaaattgagttcttacaaaa
ctttagttttactgctgataaagatttcagtgtattaaatattttactgc
ctctattcttttgtaaattgcttaatagagaagtcatactgtcgagaacc
tggtgaatgtaagaaatactagaattatttaaaccttattttgttcttcc
tatattccagagaactcatactggcgttttctcatatttttcagtaaaaa
ttgcaataaaacctttactgtgctttatcattttgataaaatttgaacat
ttatattgcctttaaaattcattataagaaaattgataagactattagta
tgtaaggaattcaggaaagagtctacttgttcttttcttcttttttttct
ttattgtttttttttcgagacagggtttctctgtatagccctggctgtcc
tggaattcactttgtagatcaggctggcctcgaactccaaaatctgcctg
tc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_37063271_37064122
seq2: B6Ng01-131L21.g_68_919

seq1  GAATTCATACTGGTTAAGAAAATCTACAGAAATAATAAAAATGGAACATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACTGGTTAAGAAAATCTACAGAAATAATAAAAATGGAACATC  50

seq1  TATTAAACTAGTTGAATTTGTTCTGAAAATGAGAGAATTCATACTGTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAACTAGTTGAATTTGTTCTGAAAATGAGAGAATTCATACTGTGTA  100

seq1  TTTTTATGAATGGTAGGAATGTAGGAAATCCTCTATTGTATGTGATAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATGAATGGTAGGAATGTAGGAAATCCTCTATTGTATGTGATAATT  150

seq1  TATTAAATATTAAATCAATTATATCAGTGAGAAAAGTAATGAATTTAACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAATATTAAATCAATTATATCAGTGAGAAAAGTAATGAATTTAACG  200

seq1  TACATGGATCCTCAGGGTTTTTTTTTTATTATGTAGTAGAGAATTCATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGATCCTCAGGGTTTTTTTTTTATTATGTAGTAGAGAATTCATAC  250

seq1  TGATAAAAAGACTTGTAGATGTAAGAAATACAATAACATTTTCATGAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAAAGACTTGTAGATGTAAGAAATACAATAACATTTTCATGAACT  300

seq1  GTAGGTAAATATTAAACACTATAGCATTCACACATTTCAAAAATTCCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTAAATATTAAACACTATAGCATTCACACATTTCAAAAATTCCCTG  350

seq1  ATTGTATGCAATACAATAAAGTCTTTATATGAAATTGAGTTCTTACAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATGCAATACAATAAAGTCTTTATATGAAATTGAGTTCTTACAAAA  400

seq1  CTTTAGTTTTACTGCTGATAAAGATTTCAGTGTATTAAATATTTTACTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTTTTACTGCTGATAAAGATTTCAGTGTATTAAATATTTTACTGC  450

seq1  CTCTATTCTTTTGTAAATTGCTTAATAGAGAAGTCATACTGTCGAGAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTCTTTTGTAAATTGCTTAATAGAGAAGTCATACTGTCGAGAACC  500

seq1  TGGTGAATGTAAGAAATACTAGAATTATTTAAACCTTATTTTGTTCTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAATGTAAGAAATACTAGAATTATTTAAACCTTATTTTGTTCTTCC  550

seq1  TATATTCCAGAGAACTCATACTGGCGTTTTCTCATATTTTTCAGTAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCCAGAGAACTCATACTGGCGTTTTCTCATATTTTTCAGTAAAAA  600

seq1  TTGCAATAAAACCTTTACTGTGCTTTATCATTTTGATAAAATTTGAACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATAAAACCTTTACTGTGCTTTATCATTTTGATAAAATTTGAACAT  650

seq1  TTATATTGCCTTTAAAATTCATTATAAGAAAATTGATAAGACTATTAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTGCCTTTAAAATTCATTATAAGAAAATTGATAAGACTATTAGTA  700

seq1  TGTAAGGAATTCAGGAAAGAGTCTACTTGTTCTTTTCTTCTTTTTTTTTC  750
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGTAAGGAATTCAGGAAAGAGTCTACTTGTTCTTTTCTTC-TTTTTTTTC  749

seq1  TTTATTG-TTTTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTC  799
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGTTTTTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTC  799

seq1  CTGGAATTCACTTTGTAGATCAGGCTGGCCTCGAACTCCAAAATCTGCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATTCACTTTGTAGATCAGGCTGGCCTCGAACTCCAAAATCTGCCT  849

seq1  GTC  852
      |||
seq2  GTC  852