BAC Information

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BAC

Clone NameB6Ng01-134H20
Chromosome18 (Build37)
Map Location 19,761,204 - 19,762,220
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040658, LOC665624, LOC665629
Downstream geneDsc3, Dsc2, Dsc1, Dsg1c, Dsg1a, Dsg1b, Dsg4, LOC435558, Dsg3, Tpi-rs10, Dsg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134H20.bB6Ng01-134H20.g
ACCDH934772DH934773
length5751,016
definitionDH934772|Mus musculus domesticus DNA, BAC clone: B6Ng01-134H20, 5' end.DH934773|Mus musculus domesticus DNA, BAC clone: B6Ng01-134H20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
attggtgttgtttgttttataactgagtagtattcccctgtgtaaatgta
ccacattttctgtatccattcctctattgagggacatctgggatatttcc
agcttctagctattataaataaggctgctatgaacatagtggagcatttg
tctgtccttattacatgttggagcatcttctgggtatatgcccaggaatg
atatagctgggtcctaaggtagtattgtgtccaattttgggaggaaccac
cagaatgatttcaagagtggttgtaccagctttcaatctcaccagtaccg
gaggagtgttcctctttctccacatactcaccagcatctgctgtcaccta
aattttatgatcttagtcattcaggttagtgtgaagtagaatctcaagct
tgttttgacttccatttccctgatgactaaggatgttgaacatttctttc
ctttcctttcctttcctttcctttcctttcctttcctttcctttcctttc
ctttccattcctttcctttcctttcctttcctttcctttcctttccttgc
ctttccctaaaaacaaatattaaca
gaattcattttttcaaaagttgagtttttttttttttaatcaagcagggt
ttttttttttttaaaggcaaattggctcattcttgaaaataggattaaca
aatagcaaatctacaaattgacggtactattcaagatcaatctaatagaa
gttcaaggtgtgcttaattcccctgtcagtcatcatctttggtgcttagc
tatataatgatggcttaacaagatgagcaaagatgtattcattcttctgc
tttatttcctggaagacaacccaaaaattggtacactatttcccttgaat
gtctgatagatagaggtgtcatctgagtcaccctttttatttgataaatt
ttaaattaagaattcagtttcttcttgtgcaatattatagggtgcttgct
tttgtaagagtgtatgtatgtatgtatgtatgaatgaatgcatgcattat
gtatgtttgtatgtatttcagtgtgtgaacatttatggagatgtattaac
ctcatgtatgtgcttaagaatgctattttaaaaagcaaaaatttcaacct
tttgattttaccaaatgaagactcaggagccagaagctgttgtgaaagac
tgttagcagagataacacccagctgaggttcctactccactgatatccca
gagggaaaaacctccaccaatattccagaagtaaaaagctatttttactt
ctctattcagtcttaaatccacttcaactcaaagctgtcctttctgttca
ctccctccctgtcagctggttgcttgttcccctcttgacctagggttgac
tttatttagctcttggattaaagatgtgtgctagggctgatgcatgccac
atgtacttgtttacagttaaacaaaaagctcttgactcaaaggctgagcc
ataccagttcacaatctcagggaaaacaaaataatcaaatatcctacaac
atagaggcaggcagaaacattgaattttggagggaatatgtaatttcttt
tttttttacattctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_19761204_19762220
seq2: B6Ng01-134H20.g_68_1083 (reverse)

seq1  ATAGAATGTTAAAAAAAAAAGAAATTACATAATTCCCTCCAAAATTCAAT  50
      |||||||| ||||||||||||||||||||| |||||||||||||||||||
seq2  ATAGAATG-TAAAAAAAAAAGAAATTACAT-ATTCCCTCCAAAATTCAAT  48

seq1  GTTTCTGCCTGCCTCTATGTTGTAGGATATTTGATTATTTTGTGTTCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTTTCTGCCTGCCTCTATGTTGTAGGATATTTGATTATTTTGTTTTCCCT  98

seq1  GAGATTGTGAACTGGTATGGCTCAGCCTTTGAGTCAAGAGCTTTTTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGTGAACTGGTATGGCTCAGCCTTTGAGTCAAGAGCTTTTTGTTT  148

seq1  -ACTGTAAACAAGTACATGTGGCATGCATCAGCCCTAGCACACATCTTTA  199
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTAAACAAGTACATGTGGCATGCATCAGCCCTAGCACACATCTTTA  198

seq1  ATCCAAGAGCTAAATAAAGTCAACCCTAGGTCAAGAGGGGAACAAGCAAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGAGCTAAATAAAGTCAACCCTAGGTCAAGAGGGGAACAAGCAAC  248

seq1  CAGCTGACAGGGAGGGAGTGAACAGAAAGGACAGCTTTGAGTTGAAGTGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGACAGGGAGGGAGTGAACAGAAAGGACAGCTTTGAGTTGAAGTGG  298

seq1  ATTTAAGACTGAATAGAGAAGTAAAAATAGCTTTTTACTTCTGGAATATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGACTGAATAGAGAAGTAAAAATAGCTTTTTACTTCTGGAATATT  348

seq1  GGTGGAGGTTTTTCCCTCTGGGATATCAGTGGAGTAGGAACCTCAGCTGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGGTTTTTCCCTCTGGGATATCAGTGGAGTAGGAACCTCAGCTGG  398

seq1  GTGTTATCTCTGCTAACAGTCTTTCACAACAGCTTCTGGCTCCTGAGTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTATCTCTGCTAACAGTCTTTCACAACAGCTTCTGGCTCCTGAGTCT  448

seq1  TCATTTGGTAAAATCAAAAGGTTGAAATTTTTGCTTTTTAAAATAGCATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGGTAAAATCAAAAGGTTGAAATTTTTGCTTTTTAAAATAGCATT  498

seq1  CTTAAGCACATACATGAGGTTAATACATCTCCATAAATGTTCACACACTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGCACATACATGAGGTTAATACATCTCCATAAATGTTCACACACTG  548

seq1  AAATACATACAAACATACATAATGCATGCATTCATTCATACATACATACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATACAAACATACATAATGCATGCATTCATTCATACATACATACA  598

seq1  TACATACACTCTTACAAAAGCAAGCACCCTATAATATTGCACAAGAAGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACACTCTTACAAAAGCAAGCACCCTATAATATTGCACAAGAAGAA  648

seq1  ACTGAATTCTTAATTTAAAATTTATCAAATAAAAAGGGTGACTCAGATGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATTCTTAATTTAAAATTTATCAAATAAAAAGGGTGACTCAGATGA  698

seq1  CACCTCTATCTATCAGACATTCAAGGGAAATAGTGTACCAATTTTTGGGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTATCTATCAGACATTCAAGGGAAATAGTGTACCAATTTTTGGGT  748

seq1  TGTCTTCCAGGAAATAAAGCAGAAGAATGAATACATCTTTGCTCATCTTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCCAGGAAATAAAGCAGAAGAATGAATACATCTTTGCTCATCTTG  798

seq1  TTAAGCCATCATTATATAGCTAAGCACCAAAGATGATGACTGACAGGGGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCCATCATTATATAGCTAAGCACCAAAGATGATGACTGACAGGGGA  848

seq1  ATTAAGCACACCTTGAACTTCTATTAGATTGATCTTGAATAGTACCGTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGCACACCTTGAACTTCTATTAGATTGATCTTGAATAGTACCGTCA  898

seq1  ATTTGTAGATTTGCTATTTGTTAATCCTATTTTCAAGAATGAGCCAATTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTAGATTTGCTATTTGTTAATCCTATTTTCAAGAATGAGCCAATTT  948

seq1  GCCTTTAAAAAAAAAAAAACCCTGCTTGATTAAAAAAAAAAAAACTCAAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAAAAAAAAAAAAACCCTGCTTGATTAAAAAAAAAAAAACTCAAC  998

seq1  TTTTGAAAAAATGAATTC  1017
      ||||||||||||||||||
seq2  TTTTGAAAAAATGAATTC  1016