BAC Information

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BAC

Clone NameB6Ng01-134J18
Chromosome18 (Build37)
Map Location 52,205,086 - 52,346,907
singlet/doubletdoublet
Overlap genenone
Upstream genePrr16, EG240289
Downstream geneFtmt, Srfbp1, Lox, Zfp474, 1700034E13Rik, Gykl1, Sncaip, A730036E13Rik, LOC667317, LOC100042430, Snx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134J18.bB6Ng01-134J18.g
ACCDH934864DH934865
length1,1581,202
definitionDH934864|Mus musculus domesticus DNA, BAC clone: B6Ng01-134J18, 5' end.DH934865|Mus musculus domesticus DNA, BAC clone: B6Ng01-134J18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,205,086 - 52,205,821)(52,345,685 - 52,346,907)
sequence
gaattctaatctcctagatatggctttagaaagtaggatctttgtgaaag
gattagattatgaggacagacacttcaaatatggagagagagagagagag
agagagagagagagagagagagagacagagagagagacagagagagagag
agagcagagatagcaagagggagagagagacacacaaagaataagatatc
atttgagatctcccttattcttttgatctgatgatgatactcaaaggggg
ttaagagtttattctggagctgaacatgtcccagtaatatagatccaagt
ttcctcaatatcatatctcggcatggtaacaatttcataaaacacagtaa
tatatcaaaggaaatcatacatcaaggatcttttcaaacatattgtataa
aaatctagtagtgagttatagcaaaggaaagaaatctctgctctaagcct
cagatgttctctgatgacactcctagcccattggttggtagaagctaaga
atactctaggttagcacaatacaattattttacctgaaagtcacaaagat
ttaggctaaacataaggtagagcaaaagatggttattgtcctactttcat
ttctgttttgtaacaaaatattctggaaaaaaaaaagagacaactttgag
gataagtttattctgctaataattttgagttcaaaaagcatcattgtgtg
gaagccaagttaggaatccagaggatctagcttcatccacagttaatagc
agaaggaaatgttttctgtttgctttctctacacttaaaccactgaggac
ccaaactcggtgaatggtaccactctcttttagggtggatcttctcacat
cagtcaacatactcaaggcagtacccaacagacatgcacacaaaccaccc
ttatctagatggtacctcatagagcctctctttacaagtgtttctagaat
taacaattaatcgacacagtatagatagtccatataaatctttttctacc
tgtagtacctcctcttgttattgtacagaacacctgacccccctcaaaaa
aaaacttacaaaatattggtttatttgatttgattctagtaatgtgacat
cagaatagagtagctagtagctggtcattaatgtcgatgcaaaatgtaat
cagccctt
gaattcttttcaataagaaaactattgaccaggttgatgaagggtaaatt
gtaaataggatattgggatttatagatttttctcctaatatctatcaatt
tggcttggtaagctacttactaaaactttatggtcaatctctcaaactgt
atggctggaagaggagtggggccggcacttaataaaaacctgcagtaaca
tttgctatttttatgtctccaacatggacaagtggagaaagcccaaggcc
ctgcaggtattttggtcaggcaacatgcaaaattatattattttttcaga
aatcctcttacttcatttcataagtcatttttcatatccatataatgggt
catatatcttcaggagtttctttaaaaaatgtcagcaattttttttctaa
tgcacattccaagactcatcataaagttaagttattgttcaggaacaact
atagtttttaatctgtaaacaatctgttaggccccgggcaggtagtgtac
atctctaagcccagcttagaattggtagcttgcctaaggcatcactctct
gcatctagattacagtatatttctgtattagaaatgttggaaacaatgac
taatgtagctctattcctgctgcagagactctatatctgctttgtgaaaa
ttgtgttactctgtatgtgtgcatatgttcaaaaactggagggagtatac
tgttgaatagaaaatggcatcatttctataattaagtattcttcctctgc
tcctactgatatacttaattctaatattactaaatttgtttgtacacaca
catgcacacatgtaaggaaatgggtaatgtatagatcaaccaatttgttc
attatctcaccataaagaaactccatggggaaaaaagaaacagtcgcaga
agtattaagaacaagtgtagactattagaaaggacagaattatttttctg
tcttagcctgctcaatgtgaagagggctatgtttgctaattggttctgtg
gaaattagattcttgtcatattacaaaggtcagagaataggggcagagtt
ctattttgtcttgctgattaatttcagaaagaattaattcctcaggtcct
tggaattcctttatgactgacgactatcaggttcctgggttgaagattaa
ttgaaagtgactcaaagaatttataatttctagtatgtctgaaaaatgag
gc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_52205086_52205821
seq2: B6Ng01-134J18.b_497_1204

seq1  CAGATGTTCTCTGATGACACTCCTAGCCCATTGGTTGGTAGAAGCTAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTTCTCTGATGACACTCCTAGCCCATTGGTTGGTAGAAGCTAAGA  50

seq1  ATACTCTAGGTTAGCACAATACAATTATTTTACCTGAAAGTCACAAAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTAGGTTAGCACAATACAATTATTTTACCTGAAAGTCACAAAGAT  100

seq1  TTAGGCTAAACATAAGGTAGAGCAAAAGATGGTTATTGTCCTACTTTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCTAAACATAAGGTAGAGCAAAAGATGGTTATTGTCCTACTTTCAT  150

seq1  TTCTGTTTTGTAACAAAATATTCTGGAAAAAAAAAAGAGACAACTTTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTTGTAACAAAATATTCTGGAAAAAAAAAAGAGACAACTTTGAG  200

seq1  GATAAGTTTATTCTGCTAATAATTTTGAGTTCAAAAAGCATCATTGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGTTTATTCTGCTAATAATTTTGAGTTCAAAAAGCATCATTGTGTG  250

seq1  GAAGCCAAGTTAGGAATCCAGAGGATCTAGCTTCATCCACAGTTAATAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCAAGTTAGGAATCCAGAGGATCTAGCTTCATCCACAGTTAATAGC  300

seq1  AGAAGGAAATGTTTTCTGTTTGCTTTCTCTACACTTAAACCACTGAGGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAAATGTTTTCTGTTTGCTTTCTCTACACTTAAACCACTGAGGAC  350

seq1  CCAAACTCGGTGAATGGTACCACTCTCTTTTAGGGTGGATCTTCTCACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTCGGTGAATGGTACCACTCTCTTTTAGGGTGGATCTTCTCACAT  400

seq1  CAGTCAACATACTCAAGGCAGTACCCAACAGACATGCACACAAACCACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAACATACTCAAGGCAGTACCCAACAGACATGCACACAAACCACCC  450

seq1  TTATCTAGATGGTACCTCATAGAGCCTCTCTTTACAAGTGTTTCTAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTAGATGGTACCTCATAGAGCCTCTCTTTACAAGTGTTTCTAGAAT  500

seq1  TAACAATTAATCGACACAGTTATTAAGATAGTCCATAATAAATCTTTTCT  550
      ||||||||||||||||||| |||  ||||||||||| |||||||||||  
seq2  TAACAATTAATCGACACAG-TAT--AGATAGTCCAT-ATAAATCTTTTTC  546

seq1  TACCTGTTAGTTACCT-CTCTTGTTATTGTAACAGAACACCTGAACCCCC  599
      |||||| ||| ||||| ||||||||||||| |||||||||||||  ||||
seq2  TACCTG-TAG-TACCTCCTCTTGTTATTGT-ACAGAACACCTGA--CCCC  591

seq1  CCCAAAAAAAAAACTTTAACAAAATATTGGTTTATTTTGATTTATGATTC  649
      ||  ||||||||||||  |||||||||||||||| |||||||  ||||||
seq2  CCTCAAAAAAAAACTT--ACAAAATATTGGTTTA-TTTGATT--TGATTC  636

seq1  TAAGGTAAATGTGACATCAAGAATAGGAGGTAGCTTAGGTAGCTTGTCAT  699
      ||  || ||||||||||| |||||||   ||||||   |||||| |||||
seq2  TA--GT-AATGTGACATC-AGAATAG--AGTAGCT--AGTAGCTGGTCAT  678

seq1  T-ATGTCAGAATGCAAAAAAATTGTTAATTCAGCCCTT  736
      | |||||   ||||||||    |||  | |||||||||
seq2  TAATGTC--GATGCAAAA----TGT--AATCAGCCCTT  708

seq1: chr18_52345685_52346907
seq2: B6Ng01-134J18.g_65_1266 (reverse)

seq1  GCCTCATTTTTTTCTAGACATTTACTTAAGAAAAATTTTATTATATATTC  50
      |||||||||||    |||||  ||||  ||||       |||||| ||||
seq2  GCCTCATTTTT---CAGACA--TACT--AGAA-------ATTATAAATTC  36

seq1  TTTTTATGTCACTTTCAAATGTAAATCTTC-ACCCAGGGA-CTGATTAAG  98
        |||  |||||||||||   | ||||||| ||||||| | |||||  ||
seq2  --TTTGAGTCACTTTCAA---TTAATCTTCAACCCAGGAACCTGAT--AG  79

seq1  TTCGTCAGTCCATATAAGTGAATCCCAGGGACCTGAG--AATAATCC--T  144
       |||||||||   ||||  |||| ||| |||||||||  | |||| |  |
seq2  -TCGTCAGTC---ATAAAGGAATTCCAAGGACCTGAGGAATTAATTCTTT  125

seq1  CTGAAATTTAATCAGCAAGAC-AGATAGAACTCTGCCCCTAATCTCCTGA  193
      |||||| |||||||||||||| | ||||||||||||||||| ||| ||||
seq2  CTGAAA-TTAATCAGCAAGACAAAATAGAACTCTGCCCCTATTCT-CTGA  173

seq1  CCTTTGTAATATGACAGGAATCTAATTTCCACAGAACCAATTAGCAAACA  243
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCTTTGTAATATGACAAGAATCTAATTTCCACAGAACCAATTAGCAAACA  223

seq1  TAGCCCTCTTCACATTGAGCAGGCTAAGACAGAAAAATAATTCTGTCCTT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTCTTCACATTGAGCAGGCTAAGACAGAAAAATAATTCTGTCCTT  273

seq1  TCTAATAGTCTACACTTGTTCTTAATACTTCTGCGACTGTTTCTTTTTTT  343
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCTAATAGTCTACACTTGTTCTTAATACTTCTGCGACTGTTTC-TTTTTT  322

seq1  CCCCATGGAGTTTCTTTATGGTGAGATAATGAACAAATTGGTTGATCTAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATGGAGTTTCTTTATGGTGAGATAATGAACAAATTGGTTGATCTAT  372

seq1  ACATTACCCATTTCCTTACATGTGTGCATGTGTGTGTACAAACAAATTTA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTACCCATTTCCTTACATGTGTGCATGTGTGTGTACAAACAAATTTA  422

seq1  GTAATATTAGAATTAAGTATATCAGTAGGAGCAGAGGAAGAATACTTAAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATTAGAATTAAGTATATCAGTAGGAGCAGAGGAAGAATACTTAAT  472

seq1  TATAGAAATGATGCCATTTTCTATTCAACAGTATACTCCCTCCAGTTTTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAAATGATGCCATTTTCTATTCAACAGTATACTCCCTCCAGTTTTT  522

seq1  GAACATATGCACACATACAGAGTAACACAATTTTCACAAAGCAGATATAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATATGCACACATACAGAGTAACACAATTTTCACAAAGCAGATATAG  572

seq1  AGTCTCTGCAGCAGGAATAGAGCTACATTAGTCATTGTTTCCAACATTTC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTGCAGCAGGAATAGAGCTACATTAGTCATTGTTTCCAACATTTC  622

seq1  TAATACAGAAATATACTGTAATCTAGATGCAGAGAGTGATGCCTTAGGCA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACAGAAATATACTGTAATCTAGATGCAGAGAGTGATGCCTTAGGCA  672

seq1  AGCTACCAATTCTAAGCTGGGCTTAGAGATGTACACTACCTGCCCGGGGC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACCAATTCTAAGCTGGGCTTAGAGATGTACACTACCTGCCCGGGGC  722

seq1  CTAACAGATTGTTTACAGATTAAAAACTATAGTTGTTCCTGAACAATAAC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAGATTGTTTACAGATTAAAAACTATAGTTGTTCCTGAACAATAAC  772

seq1  TTAACTTTATGATGAGTCTTGGAATGTGCATTAGAAAAAAAATTGCTGAC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTTATGATGAGTCTTGGAATGTGCATTAGAAAAAAAATTGCTGAC  822

seq1  ATTTTTTAAAGAAACTCCTGAAGATATATGACCCATTATATGGATATGAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTAAAGAAACTCCTGAAGATATATGACCCATTATATGGATATGAA  872

seq1  AAATGACTTATGAAATGAAGTAAGAGGATTTCTGAAAAAATAATATAATT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACTTATGAAATGAAGTAAGAGGATTTCTGAAAAAATAATATAATT  922

seq1  TTGCATGTTGCCTGACCAAAATACCTGCAGGGCCTTGGGCTTTCTCCACT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGTTGCCTGACCAAAATACCTGCAGGGCCTTGGGCTTTCTCCACT  972

seq1  TGTCCATGTTGGAGACATAAAAATAGCAAATGTTACTGCAGGTTTTTATT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATGTTGGAGACATAAAAATAGCAAATGTTACTGCAGGTTTTTATT  1022

seq1  AAGTGCCGGCCCCACTCCTCTTCCAGCCATACAGTTTGAGAGATTGACCA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCCGGCCCCACTCCTCTTCCAGCCATACAGTTTGAGAGATTGACCA  1072

seq1  TAAAGTTTTAGTAAGTAGCTTACCAAGCCAAATTGATAGATATTAGGAGA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTTTAGTAAGTAGCTTACCAAGCCAAATTGATAGATATTAGGAGA  1122

seq1  AAAATCTATAAATCCCAATATCCTATTTACAATTTACCCTTCATCAACCT  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTATAAATCCCAATATCCTATTTACAATTTACCCTTCATCAACCT  1172

seq1  GGTCAATAGTTTTCTTATTGAAAAGAATTC  1223
      ||||||||||||||||||||||||||||||
seq2  GGTCAATAGTTTTCTTATTGAAAAGAATTC  1202