BAC Information

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BAC

Clone NameB6Ng01-135B01
Chromosome18 (Build37)
Map Location 42,805,140 - 42,908,912
singlet/doubletdoublet
Overlap genePpp2r2b
Upstream geneLOC100041988, LOC100041997, Prelid2, Gm851, Sh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27, Pou4f3, LOC100042767, LOC100042027, Tcerg1, Gpr151, LOC100042037
Downstream geneLOC100042046, LOC100042051, EG666594, Stk32a, Dpysl3, LOC100042074, LOC100042807, Jakmip2, Spink3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135B01.bB6Ng01-135B01.g
ACCDH935202DH935203
length1,1261,076
definitionDH935202|Mus musculus domesticus DNA, BAC clone: B6Ng01-135B01, 5' end.DH935203|Mus musculus domesticus DNA, BAC clone: B6Ng01-135B01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,805,140 - 42,806,290)(42,907,825 - 42,908,912)
sequence
gaattcctgccagttggcagctctcaagtctaaacagaagtgtcccaagc
ctaccgagtttgacagacgtctcttagaattggggagttggggaacattg
aactccttttaaaagttctattccaattgttttatgcatagggaaatgaa
agtcaatgcatcaaaatgaagacccaaaggaacatttaaaaacttgtttt
gactagtattcagtatgtgagactaagtagtagctcgtccttctagttaa
ccttgtcttggaatatatataagttattcgtagccgccactgctataatg
ttttctgaaggatgccaagctgtatgcaagatctttttgctaaagtccag
actgtcaacactgatctcatcttttcttcgcttgcccccgacgcacactt
ttcggggtttgaggatagcccggggtttgctgttttcccttgaggcctca
agggtcacatcacgcttggtgtttcggtcgaacatcctgaagaagttatt
gtaggagcctgtcatgatgacgctgcaagggagaggggaaacggagagac
tgagtattgtagagaggagaggtaacacaacctcacggcatctttcagga
gcaaaggatgcttatcatggccactcactgggactacataggtagaaact
gagaacactgacttctgtttgaatcattgaaagcgccaagttctttggct
gggcttggaacaaagggttgcaatagccatcggtattactcattttttac
tctagagatacccttctgttcttgagtcactgatctggtcaattgttatg
atcctaggggtacctactttccactagtgttatgagatcacagtgagcag
tgtaaaggaggaatcagcaaactgccgggcagtggtggcgcacgccttta
tcccagccacttgggaggcagtggcagcggatttctgagttcgagccagc
tgggctacagagtgagttccaggacagccaggctacacagagaaccctgt
cttgaaaacaaacacacaacaccctcccccaccaaaaaaaaaagctcagc
aaacggtttcagtgtcaccccagccccaagttatggaattctaactgctg
actctgggactgaactagctcactgc
gaattcacagcctgtcttatcattacctccctgctctcaaaggtcactct
accttggtcccctttcttccataactgtgtgttttctctgcctatgactc
acaggaccctgttcttcacagacccatctacctggttctatagtcaccat
tcattgttccaagtaagagctctcagggaactacacaccttaagaaaatt
ctttgtgcatccatccagtgtttctttgttactttgcttggagtcttttt
tatttttttattttttattttggtctctttgtgacagtcttcttcaatat
tggctctcccttcacaatccaccaaagaacagaacattgaggggcatctg
tcctatgctgagacgttcaactaggcactaagggttccttgtggagttta
tagtttagtgcatgggagagccattcaaatgatcccaataccactgcaat
aagtgctaatgatgagagatgatagctgatgaagaggaagtaaggggggc
aatgaggctgcaaattaaagagagctggcctggccttgggagaagtcaca
ctgtttccctggaaaagtgatatttgagccaactctcaaataggggtttt
ttaacttccatggaatggacatcttgtcttactgacttcagagcatctgg
cacaccacaatttctgactgaaaatgtgccaatcagatgtcattataagt
gtgtttggatggcacaacacctaacaaggaactacctaccattctttctc
tctttctttgacctgaagctccaacagcgtcagctacaaatgtcctgcct
tgtttggatgatctgatgacgccctgcattgttgatctgaaagatgggca
gggtttgcatcacctgagtagtcattatccctccatgttcagaagagtag
gtgacagatgggcgacaccttgacagcagattctacttttcctatacagg
ctctcgggcagtctggacagctatcactttcccgttgcgttttctgcatt
tagaagacttgtcatggtgagacccactaccctgtggggagtatcatcat
ctgtagggatcctcgtctcatcagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_42805140_42806290
seq2: B6Ng01-135B01.b_44_1169

seq1  GAATTCCTGCCAGTTGGCAGCTCTCAAGTCTAAACAGAAGTGTCCCAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCCAGTTGGCAGCTCTCAAGTCTAAACAGAAGTGTCCCAAGC  50

seq1  CTACCGAGTTTGACAGACGTCTCTTAGAATTGGGGAGTTGGGGAACATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCGAGTTTGACAGACGTCTCTTAGAATTGGGGAGTTGGGGAACATTG  100

seq1  AACTCCTTTTAAAAGTTCTATTCCAATTGTTTTATGCATAGGGAAATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTTTTAAAAGTTCTATTCCAATTGTTTTATGCATAGGGAAATGAA  150

seq1  AGTCAATGCATCAAAATGAAGACCCAAAGGAACATTTAAAAACTTGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATGCATCAAAATGAAGACCCAAAGGAACATTTAAAAACTTGTTTT  200

seq1  GACTAGTATTCAGTATGTGAGACTAAGTAGTAGCTCGTCCTTCTAGTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGTATTCAGTATGTGAGACTAAGTAGTAGCTCGTCCTTCTAGTTAA  250

seq1  CCTTGTCTTGGAATATATATAAGTTATTCGTAGCCGCCACTGCTATAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCTTGGAATATATATAAGTTATTCGTAGCCGCCACTGCTATAATG  300

seq1  TTTTCTGAAGGATGCCAAGCTGTATGCAAGATCTTTTTGCTAAAGTCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGAAGGATGCCAAGCTGTATGCAAGATCTTTTTGCTAAAGTCCAG  350

seq1  ACTGTCAACACTGATCTCATCTTTTCTTCGCTTGCCCCCGACGCACACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCAACACTGATCTCATCTTTTCTTCGCTTGCCCCCGACGCACACTT  400

seq1  TTCGGGGTTTGAGGATAGCCCGGGGTTTGCTGTTTTCCCTTGAGGCCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGGGTTTGAGGATAGCCCGGGGTTTGCTGTTTTCCCTTGAGGCCTCA  450

seq1  AGGGTCACATCACGCTTGGTGTTTCGGTCGAACATCCTGAAGAAGTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCACATCACGCTTGGTGTTTCGGTCGAACATCCTGAAGAAGTTATT  500

seq1  GTAGGAGCCTGTCATGATGACGCTGCAAGGGAGAGGGGAAACGGAGAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAGCCTGTCATGATGACGCTGCAAGGGAGAGGGGAAACGGAGAGAC  550

seq1  TGAGTATTGTAGAGAGGAGAGGTAACACAACCTCACGGCATCTTTCAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATTGTAGAGAGGAGAGGTAACACAACCTCACGGCATCTTTCAGGA  600

seq1  GCAAAGGATGCTTATCATGGCCACTCACTGGGACTACATAGGTAGAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGATGCTTATCATGGCCACTCACTGGGACTACATAGGTAGAAACT  650

seq1  GAGAACACTGACTTCTGTTTGAATCATTGAAAGCGCCAAGTTCTTTGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACACTGACTTCTGTTTGAATCATTGAAAGCGCCAAGTTCTTTGGCT  700

seq1  GGGCTTGGAACAAAGGGTTGCAATAGCCATCGGTATTACTCATTTTTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTGGAACAAAGGGTTGCAATAGCCATCGGTATTACTCATTTTTTAC  750

seq1  TCTAGAGATACCCTTCTGTTCTTGAGTCACTGATCTGGTCAATTGTTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGATACCCTTCTGTTCTTGAGTCACTGATCTGGTCAATTGTTATG  800

seq1  ATCCTAGGGGTACCTACTTTCCACTAGTGTTATGAGATCACAGTGAGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATCCTAGGGGTACCTACTTTCCACTAGTGTTATGAGATCACAGTGAGCA-  849

seq1  GTGTAAA-GAGGAATCAGCAAACTGCCGGGCAGTGGTGGCGCACGCCTTT  899
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAAGGAGGAATCAGCAAACTGCCGGGCAGTGGTGGCGCACGCCTTT  899

seq1  AATCCCAG-CACTTGGGAGGCAGTGGCAGGCGGATTTCTGAGTTCGAGGC  948
       ||||||| ||||||||||||||||||| |||||||||||||||||| ||
seq2  -ATCCCAGCCACTTGGGAGGCAGTGGCA-GCGGATTTCTGAGTTCGA-GC  946

seq1  CAGCCTGGGCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAA  998
      ||| ||||||||||||||||||||||||||||||| |||||||||||| |
seq2  CAG-CTGGGCTACAGAGTGAGTTCCAGGACAGCCA-GGCTACACAGAG-A  993

seq1  ACCCTGTCTTGAAAAACAAACAAACAAACAACACCC-CCCCCACCAAAAA  1047
      ||||||||||||     ||||||||| ||||||||| |||||||||||||
seq2  ACCCTGTCTTGA-----AAACAAACACACAACACCCTCCCCCACCAAAAA  1038

seq1  AAAAAAGGCTCAGCAAACCGTTTCTCAGTGTTCACCCACAACCCACAATT  1097
      |||||  ||||||||||| |||  |||||| |||||| || ||| |||  
seq2  AAAAA--GCTCAGCAAACGGTT--TCAGTG-TCACCC-CAGCCC-CAA--  1079

seq1  TTTATGGGATTTCTTAGCTGTCTGAACTCTGGGACTGTAACTTAGCTCAT  1147
       |||||| |||   || ||| ||| |||||||||||| ||| ||||||| 
seq2  GTTATGGAATT--CTAACTG-CTG-ACTCTGGGACTG-AAC-TAGCTCA-  1122

seq1  CTGC  1151
      ||||
seq2  CTGC  1126

seq1: chr18_42907825_42908912
seq2: B6Ng01-135B01.g_68_1143 (reverse)

seq1  GGCTGATGGAAGACGAGGATTCCCTACAGATGGAATGATACTTCCCCACA  50
      ||||||||  ||||||||| ||||||||||||  ||||||| ||||||||
seq2  GGCTGATG--AGACGAGGA-TCCCTACAGATG--ATGATAC-TCCCCACA  44

seq1  GGGTAGTGGGTCTTCACAATGACAAGTC-TCTAAATTGCAGAAAAACGCA  99
      |||||||||||| |||| |||||||||| |||||| ||||| ||||||||
seq2  GGGTAGTGGGTC-TCACCATGACAAGTCTTCTAAA-TGCAG-AAAACGCA  91

seq1  ACGGGAAAGTGATAGCTGTCCAGACTTGCCCGAGAGCCTGTATAGGGAAA  149
      ||||||||||||||||||||||||| |||||||||||||||||| |||||
seq2  ACGGGAAAGTGATAGCTGTCCAGAC-TGCCCGAGAGCCTGTATA-GGAAA  139

seq1  GGTAGAATCTGCTGTCAAGGTGTCGCCCATCTGTCACCTACTCTTCTGAA  199
       ||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGTAGAATCTGCTGTCAAGGTGTCGCCCATCTGTCACCTACTCTTCTG-A  188

seq1  ACATGGAGGGATAATGAACTACTCAGGTGATGCAAACCCTGCCCATCTTT  249
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACATGGAGGGATAATG-ACTACTCAGGTGATGCAAACCCTGCCCATCTTT  237

seq1  CAGATCAACAATGCAGGGCGTCATCAGATCATCCAAACAAGGCAGGACAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCAACAATGCAGGGCGTCATCAGATCATCCAAACAAGGCAGGACAT  287

seq1  TTGTAGCTGACGCTGTTGGAGCTTCAGGTCAAAGAAAGAGAGAAAGAATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGCTGACGCTGTTGGAGCTTCAGGTCAAAGAAAGAGAGAAAGAATG  337

seq1  GTAGGTAGTTCCTTGTTAGGTGTTGTGCCATCCAAACACACTTATAATGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTAGTTCCTTGTTAGGTGTTGTGCCATCCAAACACACTTATAATGA  387

seq1  CATCTGATTGGCACATTTTCAGTCAGAAATTGTGGTGTGCCAGATGCTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGATTGGCACATTTTCAGTCAGAAATTGTGGTGTGCCAGATGCTCT  437

seq1  GAAGTCAGTAAGACAAGATGTCCATTCCATGGAAGTTAAAAAACCCCTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCAGTAAGACAAGATGTCCATTCCATGGAAGTTAAAAAACCCCTAT  487

seq1  TTGAGAGTTGGCTCAAATATCACTTTTCCAGGGAAACAGTGTGACTTCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGTTGGCTCAAATATCACTTTTCCAGGGAAACAGTGTGACTTCTC  537

seq1  CCAAGGCCAGGCCAGCTCTCTTTAATTTGCAGCCTCATTGCCCCCCTTAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCCAGGCCAGCTCTCTTTAATTTGCAGCCTCATTGCCCCCCTTAC  587

seq1  TTCCTCTTCATCAGCTATCATCTCTCATCATTAGCACTTATTGCAGTGGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTTCATCAGCTATCATCTCTCATCATTAGCACTTATTGCAGTGGT  637

seq1  ATTGGGATCATTTGAATGGCTCTCCCATGCACTAAACTATAAACTCCACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGATCATTTGAATGGCTCTCCCATGCACTAAACTATAAACTCCACA  687

seq1  AGGAACCCTTAGTGCCTAGTTGAACGTCTCAGCATAGGACAGATGCCCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACCCTTAGTGCCTAGTTGAACGTCTCAGCATAGGACAGATGCCCCT  737

seq1  CAATGTTCTGTTCTTTGGTGGATTGTGAAGGGAGAGCCAATATTGAAGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTCTGTTCTTTGGTGGATTGTGAAGGGAGAGCCAATATTGAAGAA  787

seq1  GACTGTCACAAAGAGACCAAAATAAAAAATAAAAAAATAAAAAAGACTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTCACAAAGAGACCAAAATAAAAAATAAAAAAATAAAAAAGACTCC  837

seq1  AAGCAAAGTAACAAAGAAACACTGGATGGATGCACAAAGAATTTTCTTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAGTAACAAAGAAACACTGGATGGATGCACAAAGAATTTTCTTAA  887

seq1  GGTGTGTAGTTCCCTGAGAGCTCTTACTTGGAACAATGAATGGTGACTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTAGTTCCCTGAGAGCTCTTACTTGGAACAATGAATGGTGACTAT  937

seq1  AGAACCAGGTAGATGGGTCTGTGAAGAACAGGGTCCTGTGAGTCATAGGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCAGGTAGATGGGTCTGTGAAGAACAGGGTCCTGTGAGTCATAGGC  987

seq1  AGAGAAAACACACAGTTATGGAAGAAAGGGGACCAAGGTAGAGTGACCTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAACACACAGTTATGGAAGAAAGGGGACCAAGGTAGAGTGACCTT  1037

seq1  TGAGAGCAGGGAGGTAATGATAAGACAGGCTGTGAATTC  1088
      |||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCAGGGAGGTAATGATAAGACAGGCTGTGAATTC  1076