BAC Information

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BAC

Clone NameB6Ng01-135C06
Chromosome18 (Build37)
Map Location 43,702,814 - 43,837,713
singlet/doubletdoublet
Overlap geneJakmip2
Upstream geneTcerg1, Gpr151, LOC100042037, Ppp2r2b, LOC100042046, LOC100042051, EG666594, Stk32a, Dpysl3, LOC100042074, LOC100042807
Downstream geneSpink3, Scgb3a2, Gm94, Spink5, EG433178, LOC666969, EG433180, Spink12, LOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot, Dcp2, Mcc, LOC100042883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135C06.bB6Ng01-135C06.g
ACCDH935256DH935257
length1,1181,100
definitionDH935256|Mus musculus domesticus DNA, BAC clone: B6Ng01-135C06, 5' end.DH935257|Mus musculus domesticus DNA, BAC clone: B6Ng01-135C06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,836,592 - 43,837,713)(43,702,814 - 43,703,938)
sequence
gaattcagttgagctatttaaatatagaaatttaggagaacatgtcaaat
catgttttaatcttaaaatccaatagaaaaatcaaaatgtagaatttaat
cccagttttgtaaagaatgataaattacacacacacagacccattaaaaa
caatgtaatataaatcaaaatattgacaggaattaattgatggtagtaag
gtaataattttacatttgtgttttctatgagtttttaaatataaaggaaa
cattttattactgaagtgtataaagtttgtaaagaatgtgaccacataga
gaaaatttgcagggactatgaaaaatgaaaatttcattcttcctaggtca
taggtttccagtctggtctccatagttagccacagtattctgatgagcca
ggcaggatccagaccctccatactgtcacctagagggtatcctcttacag
ttttgagggaaaagaccctatctacaagaaaacttcaatcccactgatat
aatttatgtgatattctgtgtgccgaaatactaaatttccttaaaaccga
aaaatcgtattttcattcagctttcagtcttctttttatcaatgtcatga
ctttcggtttagtgtcatgaatttttgttgttgttagtaattattagaac
cctgtgcacaaaaacttcattgtgaccttctaaggcttggttaaaatcca
attttagtgctttaaaacaaaacaaaacaaaacatgtatttattcattat
atgcatctctctatctctctgtctctctctctctatgtgtgaacatccaa
atcgtttgatttatgcatttaacatgtctttaacctgaaaagctagaaat
ggactattggcacagggagtttggaaggaggacaggataatatcagtgca
agcaaagtacagacagggttaactaagggcagagaataaaaagagcagag
tgagacgatggagaatgagtgccagaagctcagccaaagtgagtgtgtgt
gagaagtacttggaaacctgtgatcttgcatctgagaaaaatatgtagag
gatatgaaagaatatatgttgacctgaagagcaggaagaatacttgctag
atttagaatgggagaaag
gaattcatttcttcctgcttcttatttggtccatcctacatcatgtccag
atctgtccttcctacaccaaccaatatagctaataggaacctgaagggtg
aaacgatcaggctgggtatggcatagcacctgcctagtgtgcataagatc
cccagttcttttctcagtggcataaggatgaaaaaaggttagaaagacaa
cagcagtctggagtctaagggatgaagaaaggaaacgttagctgagttgt
attaaaactaaggcctggaatcttacaaggccccacattgatcttgaccc
ttcctgttcttcagcctcacctctttgcctgcctctgtgccttccagcca
tgctgacattttatgcagctattgaatgtacactggggtcttaatacttg
ctcctttttcggagacatttttctgagacctttctgtggctggtacctta
gttatcatgaatcctcagagttctcatctgactagctagcctaacatggt
taatctttctttctgattcacatggacatcaatacacatcatctaacctt
cttcacagcactcagtggccccttagagacggtccaagccttggttcatt
catgctatggctttgtcttttccagctgtatgacagatcagatgccttca
gcaatggccatatgcaatgcatctgctacacagctggccctcggtaaatg
gctcttaatgattataaaacaaggttttaagtatatatatatttaaaaag
agtgttctgtccaatttgcttatctgacagaagcttctacaaaagtggac
ctttaataaggactggaaaaaaatgagactgtccaaatgccacttttggt
ggaaaattaagcaaacaaagcttggaaataggaaaccaaaggcaagtggt
agtagctttgcacttaactcctgaggtagtctcagtcttatctaaggagg
gataccagctaatgatgaccttaaaaccctacataagtctatttggaaag
gagacgacgatgtccttgagcagaatttattgaggaagtgattaaaacag
actactttggaggagagtggaagtactagatgtgatccatggcctctggg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_43836592_43837713
seq2: B6Ng01-135C06.b_50_1167 (reverse)

seq1  CTTTCTC---------ATCTAGCCAGTATTCTTCCCTGCTCTTTCAGGTC  41
      |||||||         ||||||| ||||||||| ||||||| ||||||||
seq2  CTTTCTCCCATTCTAAATCTAGCAAGTATTCTT-CCTGCTC-TTCAGGTC  48

seq1  ACATTATATTCTATCATATCCTCTTACATATTTTTCTCAGATTGCCAGAT  91
      |   |||||||| |||||||||| ||||||||||||||||| ||| ||||
seq2  AACATATATTCTTTCATATCCTC-TACATATTTTTCTCAGA-TGCAAGAT  96

seq1  CACAGGTTTCCAAGTAACTTCCTCACACACACCTCACTTTGGCTGAGCCT  141
      ||||||||||||||| |||| |||||||||| ||||||||||||||| ||
seq2  CACAGGTTTCCAAGT-ACTT-CTCACACACA-CTCACTTTGGCTGAG-CT  142

seq1  TCTTGGCACCTCATTCCTCCATCGTCTCACTCTGCTCTTTTTTATTTCTC  191
      || ||||| |||||| ||||||||||||||||||||||||||   |||||
seq2  TC-TGGCA-CTCATT-CTCCATCGTCTCACTCTGCTCTTTTT--ATTCTC  187

seq1  TGCCCTTAGTTTACCCTGTCTGTACTTTGCTTGCACTGATATTATCCTGT  241
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTAGTTAACCCTGTCTGTACTTTGCTTGCACTGATATTATCCTGT  237

seq1  CCTCCTTCCAAACTCCCTGTGCCAATAGTCCATTTCTAGCTTTTCAGGTT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTCCAAACTCCCTGTGCCAATAGTCCATTTCTAGCTTTTCAGGTT  287

seq1  AAAGACATGTTAAATGCATAAATCAAACGATTTGGATGTTCACACATAGA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACATGTTAAATGCATAAATCAAACGATTTGGATGTTCACACATAGA  337

seq1  GAGAGAGAGACAGAGAGATAGAGAGATGCATATAATGAATAAATACATGT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGACAGAGAGATAGAGAGATGCATATAATGAATAAATACATGT  387

seq1  TTTGTTTTGTTTTGTTTTAAAGCACTAAAATTGGATTTTAACCAAGCCTT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTTTTGTTTTAAAGCACTAAAATTGGATTTTAACCAAGCCTT  437

seq1  AGAAGGTCACAATGAAGTTTTTGTGCACAGGGTTCTAATAATTACTAACA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTCACAATGAAGTTTTTGTGCACAGGGTTCTAATAATTACTAACA  487

seq1  ACAACAAAAATTCATGACACTAAACCGAAAGTCATGACATTGATAAAAAG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAAAATTCATGACACTAAACCGAAAGTCATGACATTGATAAAAAG  537

seq1  AAGACTGAAAGCTGAATGAAAATACGATTTTTCGGTTTTAAGGAAATTTA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGAAAGCTGAATGAAAATACGATTTTTCGGTTTTAAGGAAATTTA  587

seq1  GTATTTCGGCACACAGAATATCACATAAATTATATCAGTGGGATTGAAGT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCGGCACACAGAATATCACATAAATTATATCAGTGGGATTGAAGT  637

seq1  TTTCTTGTAGATAGGGTCTTTTCCCTCAAAACTGTAAGAGGATACCCTCT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGTAGATAGGGTCTTTTCCCTCAAAACTGTAAGAGGATACCCTCT  687

seq1  AGGTGACAGTATGGAGGGTCTGGATCCTGCCTGGCTCATCAGAATACTGT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGACAGTATGGAGGGTCTGGATCCTGCCTGGCTCATCAGAATACTGT  737

seq1  GGCTAACTATGGAGACCAGACTGGAAACCTATGACCTAGGAAGAATGAAA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAACTATGGAGACCAGACTGGAAACCTATGACCTAGGAAGAATGAAA  787

seq1  TTTTCATTTTTCATAGTCCCTGCAAATTTTCTCTATGTGGTCACATTCTT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTTTTCATAGTCCCTGCAAATTTTCTCTATGTGGTCACATTCTT  837

seq1  TACAAACTTTATACACTTCAGTAATAAAATGTTTCCTTTATATTTAAAAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACTTTATACACTTCAGTAATAAAATGTTTCCTTTATATTTAAAAA  887

seq1  CTCATAGAAAACACAAATGTAAAATTATTACCTTACTACCATCAATTAAT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAGAAAACACAAATGTAAAATTATTACCTTACTACCATCAATTAAT  937

seq1  TCCTGTCAATATTTTGATTTATATTACATTGTTTTTAATGGGTCTGTGTG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCAATATTTTGATTTATATTACATTGTTTTTAATGGGTCTGTGTG  987

seq1  TGTGTAATTTATCATTCTTTACAAAACTGGGATTAAATTCTACATTTTGA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAATTTATCATTCTTTACAAAACTGGGATTAAATTCTACATTTTGA  1037

seq1  TTTTTCTATTGGATTTTAAGATTAAAACATGATTTGACATGTTCTCCTAA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTATTGGATTTTAAGATTAAAACATGATTTGACATGTTCTCCTAA  1087

seq1  ATTTCTATATTTAAATAGCTCAACTGAATTC  1122
      |||||||||||||||||||||||||||||||
seq2  ATTTCTATATTTAAATAGCTCAACTGAATTC  1118

seq1: chr18_43702814_43703938
seq2: B6Ng01-135C06.g_68_1167

seq1  GAATTCATTTCTTCCTGCTTCTTATTTGGTCCATCCTACATCATGTCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCTTCCTGCTTCTTATTTGGTCCATCCTACATCATGTCCAG  50

seq1  ATCTGTCCTTCCTACACCAACCAATATAGCTAATAGGAACCTGAAGGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCCTTCCTACACCAACCAATATAGCTAATAGGAACCTGAAGGGTG  100

seq1  AAACGATCAGGCTGGGTATGGCATAGCACCTGCCTAGTGTGCATAAGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGATCAGGCTGGGTATGGCATAGCACCTGCCTAGTGTGCATAAGATC  150

seq1  CCCAGTTCTTTTCTCAGTGGCATAAGGATGAAAAAAGGTTAGAAAGACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTCTTTTCTCAGTGGCATAAGGATGAAAAAAGGTTAGAAAGACAA  200

seq1  CAGCAGTCTGGAGTCTAAGGGATGAAGAAAGGAAACGTTAGCTGAGTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTCTGGAGTCTAAGGGATGAAGAAAGGAAACGTTAGCTGAGTTGT  250

seq1  ATTAAAACTAAGGCCTGGAATCTTACAAGGCCCCACATTGATCTTGACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAACTAAGGCCTGGAATCTTACAAGGCCCCACATTGATCTTGACCC  300

seq1  TTCCTGTTCTTCAGCCTCACCTCTTTGCCTGCCTCTGTGCCTTCCAGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTTCTTCAGCCTCACCTCTTTGCCTGCCTCTGTGCCTTCCAGCCA  350

seq1  TGCTGACATTTTATGCAGCTATTGAATGTACACTGGGGTCTTAATACTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGACATTTTATGCAGCTATTGAATGTACACTGGGGTCTTAATACTTG  400

seq1  CTCCTTTTTCGGAGACATTTTTCTGAGACCTTTCTGTGGCTGGTACCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTTTCGGAGACATTTTTCTGAGACCTTTCTGTGGCTGGTACCTTA  450

seq1  GTTATCATGAATCCTCAGAGTTCTCATCTGACTAGCTAGCCTAACATGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCATGAATCCTCAGAGTTCTCATCTGACTAGCTAGCCTAACATGGT  500

seq1  TAATCTTTCTTTCTGATTCACATGGACATCAATACACATCATCTAACCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTTCTTTCTGATTCACATGGACATCAATACACATCATCTAACCTT  550

seq1  CTTCACAGCACTCAGTGGCCCCTTAGAGACGGTCCAAGCCTTGGTTCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACAGCACTCAGTGGCCCCTTAGAGACGGTCCAAGCCTTGGTTCATT  600

seq1  CATGCTATGGCTTTGTCTTTTCCAGCTGTATGACAGATCAGATGCCTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTATGGCTTTGTCTTTTCCAGCTGTATGACAGATCAGATGCCTTCA  650

seq1  GCAATGGCCATATGCAATGCATCTGCTACACAGCTGGCCCTCGGTAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGGCCATATGCAATGCATCTGCTACACAGCTGGCCCTCGGTAAATG  700

seq1  GCTCTTAATGATTATAAAACAAGGTTTTAAGTATATATATATTTAAAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTAATGATTATAAAACAAGGTTTTAAGTATATATATATTTAAAAAG  750

seq1  AGTGTTCTGTCCAATTTGCTTATCTGACAGAAGCTTCTACAAAAAGTGGA  800
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGTGTTCTGTCCAATTTGCTTATCTGACAGAAGCTTCTAC-AAAAGTGGA  799

seq1  CCTTTAATAAGGACTGGAAAAAAATGAGACTGTCCAAATGCCACTTTTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATAAGGACTGGAAAAAAATGAGACTGTCCAAATGCCACTTTTGG  849

seq1  TGGAAAATTAAGCAAACAAAAGCTTGGAAATAGGAAACCAAAGGCAAGTG  900
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGGAAAATTAAGCAAAC-AAAGCTTGGAAATAGGAAACCAAAGGCAAGTG  898

seq1  GTAGTAGGCTTTGCACTTAACTCCTGAGGTAGTCTCAGTCTTATCTTAAG  950
      |||||| |||||||||||||||||||||||||||||||||||||||  | 
seq2  GTAGTA-GCTTTGCACTTAACTCCTGAGGTAGTCTCAGTCTTATCT--AA  945

seq1  GGAGGGATAACCAGCTAATGAATGACCTTAAAAACCCTACATAAGGTCTA  1000
      |||||||| ||||||||||| |||||||| |||||||||||||| |||||
seq2  GGAGGGAT-ACCAGCTAATG-ATGACCTT-AAAACCCTACATAA-GTCTA  991

seq1  TTTGGAAAGGGAGACGACAGATGTCCTTGAGCAAGGAATTTATTGGAGGA  1050
      |||||||| ||||||||| ||||||||||||||  ||||||||| |||||
seq2  TTTGGAAA-GGAGACGAC-GATGTCCTTGAGCA--GAATTTATT-GAGGA  1036

seq1  AAGGTGATTAAAACAAGGACCTACTTATGGAGGAGAGTGAGAAGTACCTA  1100
      |  ||||||||||||  || |||||| |||||||||||| |||||| |||
seq2  A--GTGATTAAAACA--GA-CTACTT-TGGAGGAGAGTG-GAAGTA-CTA  1078

seq1  GGATGTGATTTCCATGGCCTCTGGG  1125
       |||||||  |||||||||||||||
seq2  -GATGTGA--TCCATGGCCTCTGGG  1100