BAC Information

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BAC

Clone NameB6Ng01-135E22
Chromosome18 (Build37)
Map Location 42,056,370 - 42,205,878
singlet/doubletdoublet
Overlap genePrelid2, Gm851
Upstream geneLOC677182, LOC100041988, LOC100041997
Downstream geneSh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27, Pou4f3, LOC100042767, LOC100042027, Tcerg1, Gpr151, LOC100042037, Ppp2r2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135E22.bB6Ng01-135E22.g
ACCDH935380DH935381
length1,062546
definitionDH935380|Mus musculus domesticus DNA, BAC clone: B6Ng01-135E22, 5' end.DH935381|Mus musculus domesticus DNA, BAC clone: B6Ng01-135E22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,204,822 - 42,205,878)(42,056,370 - 42,056,915)
sequence
gaattcttctctttctcctccttttcttcatttttggtaagcaggtctta
aaaaagaagtgcaaaagacttttcaccaaattaactctaaggaagaaaat
agcactatgtttgaccaaccagttccctatcgaatggaatgctctgacca
atagagactccgtggctcacagctgcatcccaccctcatgactcttgtcg
taggaatttagttaaaacaacgacaacaacaacaacaacaactaaattgt
ttttctgataaaaaatatcttaaaatgaaacctcaaaaataattctgcaa
tgaaccaatagattcacttggtatatttgcaggtgagagtaaatgcatgt
gcagttatgacttaaaagggagaatttacaagctctggagactaccctca
gactgaagtgtccttggtatagtcaggaatggaaaagagaggcaggactc
ttcaccctgagactaagggagaaggaccctgtgttagggtacctggcttt
gggacactggactggcatcttataaagaaatgagtagctggagggacgtg
ggaatctgtccattctgtatcacagagtggtttgcccatctatgcctcta
gttagaatcttcctcctgattttcagtagactggcctgataagtacaccc
gtgttttctctccagactagaaggtgactttaaaggcatcatgggagaac
agaaaatagaaaactaggtaagaatgcatcttgccattctatcaatagtg
gaaagtgactctgcttctaagttccagtcaactgtatgcccatgttagtt
gcttcctgtctatcatgccctctaagatgccattagtgaggactatggaa
agcatacaagggtcctctgtaccatttctacaaactcttgtgaaaaaaaa
ttccttgtctgacctgatctcccagttctcctagagtctagactatcaac
tacggagtgtatctggagggatctgtggcttcagaaaatattgtagcaga
aggatggttctttttctggtggccattgggaggggagacccttgggttcc
caggaaggtttg
gaattcaaatcaaacaacttgaaggtcacagaaagacatactccaataaa
ctcagagacactaaacacaacactcctttgttcctgaataggaagaccca
gaagcctcttggagatccccttccaggtgctctgcccactgcggaggtcc
ctcaaagagtagacacaatagggttccagcaccaaaagatgaactcctac
ccaagagtagacatctacataaaataagacaccccccagaagaggcaaag
aatgcaaaagtaacaagtccacagaactggaaagccagggagcttctaat
tagcattatctagaaccaccccaaataccagagtagaagtctagatcaga
aatcacacacctcaccccaccctcagctgaatagtggtggcatacacctt
taatcccagctctctggaggcagaggcggggcagtgagttcaaggccagc
ctggtctacaaagcaagtttcaggatgaccaaggctacacagaagaaacc
ctatcttaaataaagaaagaaagaaagaaagaaagaaggaaggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_42204822_42205878
seq2: B6Ng01-135E22.b_44_1105 (reverse)

seq1  CAAACC-TCCTGGGAA-CCAAGGGTCTCCCCTCCC-ATTGCCACCAGAAA  47
      |||||| ||||||||| |||||||||||||||||| || |||||||||||
seq2  CAAACCTTCCTGGGAACCCAAGGGTCTCCCCTCCCAATGGCCACCAGAAA  50

seq1  A--GACCATCC-TCTGCTAC-ATATGTATCTGGAGCCACAGATCCCTCCA  93
      |   ||||||| |||||||| |||| | |||| |||||||||||||||||
seq2  AAGAACCATCCTTCTGCTACAATAT-TTTCTGAAGCCACAGATCCCTCCA  99

seq1  GATACACTCCGTAGTTGATAGTCTAGACTCTAGGAGAACTGGGAGATCAG  143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACACTCCGTAGTTGATAGTCTAGACTCTAGGAGAACTGGGAGATCAG  149

seq1  GTCAGACAAGGAATTTTTTTTCACAAGAGTTTGTAGAAATGGTACAGAGG  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGACAAGGAATTTTTTTTCACAAGAGTTTGTAGAAATGGTACAGAGG  199

seq1  ACCCCTTGTATGCTTTCCATAGTCCTCACTAATGGCATCTTAGAGGGCAT  243
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-CCCTTGTATGCTTTCCATAGTCCTCACTAATGGCATCTTAGAGGGCAT  248

seq1  GATAGACAGGAAGCAACTAACATGGGCATACAGTTGACTGGAACTTAGAA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGACAGGAAGCAACTAACATGGGCATACAGTTGACTGGAACTTAGAA  298

seq1  GCAGAGTCACTTTCCACTATTGATAGAATGGCAAGATGCATTCTTACCTA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTCACTTTCCACTATTGATAGAATGGCAAGATGCATTCTTACCTA  348

seq1  GTTTTCTATTTTCTGTTCTCCCATGATGCCTTTAAAGTCACCTTCTAGTC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTATTTTCTGTTCTCCCATGATGCCTTTAAAGTCACCTTCTAGTC  398

seq1  TGGAGAGAAAACACGGGTGTACTTATCAGGCCAGTCTACTGAAAATCAGG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGAAAACACGGGTGTACTTATCAGGCCAGTCTACTGAAAATCAGG  448

seq1  AGGAAGATTCTAACTAGAGGCATAGATGGGCAAACCACTCTGTGATACAG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGATTCTAACTAGAGGCATAGATGGGCAAACCACTCTGTGATACAG  498

seq1  AATGGACAGATTCCCACGTCCCTCCAGCTACTCATTTCTTTATAAGATGC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACAGATTCCCACGTCCCTCCAGCTACTCATTTCTTTATAAGATGC  548

seq1  CAGTCCAGTGTCCCAAAGCCAGGTACCCTAACACAGGGTCCTTCTCCCTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCAGTGTCCCAAAGCCAGGTACCCTAACACAGGGTCCTTCTCCCTT  598

seq1  AGTCTCAGGGTGAAGAGTCCTGCCTCTCTTTTCCATTCCTGACTATACCA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCAGGGTGAAGAGTCCTGCCTCTCTTTTCCATTCCTGACTATACCA  648

seq1  AGGACACTTCAGTCTGAGGGTAGTCTCCAGAGCTTGTAAATTCTCCCTTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACTTCAGTCTGAGGGTAGTCTCCAGAGCTTGTAAATTCTCCCTTT  698

seq1  TAAGTCATAACTGCACATGCATTTACTCTCACCTGCAAATATACCAAGTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCATAACTGCACATGCATTTACTCTCACCTGCAAATATACCAAGTG  748

seq1  AATCTATTGGTTCATTGCAGAATTATTTTTGAGGTTTCATTTTAAGATAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATTGGTTCATTGCAGAATTATTTTTGAGGTTTCATTTTAAGATAT  798

seq1  TTTTTATCAGAAAAACAATTTAGTTGTTGTTGTTGTTGTTGTCGTTGTTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATCAGAAAAACAATTTAGTTGTTGTTGTTGTTGTTGTCGTTGTTT  848

seq1  TAACTAAATTCCTACGACAAGAGTCATGAGGGTGGGATGCAGCTGTGAGC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAATTCCTACGACAAGAGTCATGAGGGTGGGATGCAGCTGTGAGC  898

seq1  CACGGAGTCTCTATTGGTCAGAGCATTCCATTCGATAGGGAACTGGTTGG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGAGTCTCTATTGGTCAGAGCATTCCATTCGATAGGGAACTGGTTGG  948

seq1  TCAAACATAGTGCTATTTTCTTCCTTAGAGTTAATTTGGTGAAAAGTCTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACATAGTGCTATTTTCTTCCTTAGAGTTAATTTGGTGAAAAGTCTT  998

seq1  TTGCACTTCTTTTTTAAGACCTGCTTACCAAAAATGAAGAAAAGGAGGAG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACTTCTTTTTTAAGACCTGCTTACCAAAAATGAAGAAAAGGAGGAG  1048

seq1  AAAGAGAAGAATTC  1057
      ||||||||||||||
seq2  AAAGAGAAGAATTC  1062

seq1: chr18_42056370_42056915
seq2: B6Ng01-135E22.g_68_613

seq1  GAATTCAAATCAAACAACTTGAAGGTCACAGAAAGACATACTCCAATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATCAAACAACTTGAAGGTCACAGAAAGACATACTCCAATAAA  50

seq1  CTCAGAGACACTAAACACAACACTCCTTTGTTCCTGAATAGGAAGACCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGACACTAAACACAACACTCCTTTGTTCCTGAATAGGAAGACCCA  100

seq1  GAAGCCTCTTGGAGATCCCCTTCCAGGTGCTCTGCCCACTGCGGAGGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTCTTGGAGATCCCCTTCCAGGTGCTCTGCCCACTGCGGAGGTCC  150

seq1  CTCAAAGAGTAGACACAATAGGGTTCCAGCACCAAAAGATGAACTCCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGAGTAGACACAATAGGGTTCCAGCACCAAAAGATGAACTCCTAC  200

seq1  CCAAGAGTAGACATCTACATAAAATAAGACACCCCCCAGAAGAGGCAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGTAGACATCTACATAAAATAAGACACCCCCCAGAAGAGGCAAAG  250

seq1  AATGCAAAAGTAACAAGTCCACAGAACTGGAAAGCCAGGGAGCTTCTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAAAGTAACAAGTCCACAGAACTGGAAAGCCAGGGAGCTTCTAAT  300

seq1  TAGCATTATCTAGAACCACCCCAAATACCAGAGTAGAAGTCTAGATCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTATCTAGAACCACCCCAAATACCAGAGTAGAAGTCTAGATCAGA  350

seq1  AATCACACACCTCACCCCACCCTCAGCTGAATAGTGGTGGCATACACCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACACACCTCACCCCACCCTCAGCTGAATAGTGGTGGCATACACCTT  400

seq1  TAATCCCAGCTCTCTGGAGGCAGAGGCGGGGCAGTGAGTTCAAGGCCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCAGCTCTCTGGAGGCAGAGGCGGGGCAGTGAGTTCAAGGCCAGC  450

seq1  CTGGTCTACAAAGCAAGTTTCAGGATGACCAAGGCTACACAGAAGAAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTACAAAGCAAGTTTCAGGATGACCAAGGCTACACAGAAGAAACC  500

seq1  CTATCTTAAATAAAGAAAGAAAGAAAGAAAGAAAGAAGGAAGGAAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTAAATAAAGAAAGAAAGAAAGAAAGAAAGAAGGAAGGAAG  546