BAC Information

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BAC

Clone NameB6Ng01-135H19
Chromosome18 (Build37)
Map Location 77,912,383 - 78,042,217
singlet/doubletdoublet
Overlap gene8030462N17Rik, 4930465K10Rik, Ccdc5, Atp5a1, Pstpip2
Upstream geneEG664805, LOC620139, Ier3ip1, Hdhd2, Katnal2, Pias2, EG639653, St8sia5, Loxhd1, Rnf165
Downstream gene5430411K18Rik, Cd33l3, Slc14a1, Slc14a2, EG620155, Setbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135H19.bB6Ng01-135H19.g
ACCDH935509DH935510
length1,120735
definitionDH935509|Mus musculus domesticus DNA, BAC clone: B6Ng01-135H19, 5' end.DH935510|Mus musculus domesticus DNA, BAC clone: B6Ng01-135H19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,912,383 - 77,913,511)(78,041,486 - 78,042,217)
sequence
gaattccatttcttaaaaataatcttgtccctatcattaaccacttaatg
tttttgctgatgtgctaaaaagtgcactggcaactcagaataggtttgtt
ttttaagttggccatgtctttttaatagactgcagtcttcaaatttatat
agagctgcagtctcctggattttttcaagtgtcacacatctaactgagtc
tgacagctgagaaaggccaccaggtgcttacagtcagtttaaaaaacatc
ctctacctggtatctctgcagtgattgtcttgctgctccctgaaacctcg
tcatcatcatctgaggaactcgtgcttgagtcacaagtcaggtcactgtc
actggtactactgtcctgcagcaggttgtacttcttccttgcagctgcct
cccgtttctgcctcagtagtctgatcctctccttgtgcttttggctccga
tgacctttaaccttggtgactctgccattctgcttatcgctggattgccg
gtttttcttggcagccatagtagatgtttcactttcagaacgggaccgcc
gagactttcgtccaacagtggcaccagacactcctgaagtatctccttcc
acggttgtttctgcttgcgagggttcattctcttcaacagaagacaatgt
atctgaatcagccaaatggccactagaggaaggggaaagcatgcaatgat
tagaggagtcactctcataaactcggccagttgtgggcttgtcactctct
gtggatgctaactgagactctgaagagtcccttctcagttccatcaacaa
acagggcattgaagagagaactgtagagtcagctacaccatctttctgaa
cttgagattccagttctacagagccatcttcttccttggctgtctcttgt
tcagatgcttttggtggggctgcagactcaatgagttcttcaacttttcc
cactgctcctccatcttcatctcagatccaaattaaatcatggaacggag
tctaggaaacgatattcaaaggtgcaacagggagcagcttgtatgaaaca
cacaaggtcatgactagaaatggagactatttactagcagcattcctatt
tttctgagtgccaaaggtac
gaattcaagagcctcatggctcaatttcccaagttttgagattatgggtg
tgtgtgccacacctggcttagaaagatttttttttaagtacttcgtataa
tggagcatttaaaaggaaaaggatgtggtgggctccagacaatcatgaat
aaggaaaaaaataacaatgagaatggccaggaaaatcgagaacaaagagg
agatggcggtgtacatatagctctcaataaacaaccctcttacagcctga
gaactcaggcagcggtggtgattcatattctctctctctctctctctctc
tctctctctctctctctctctctttctctctctctgagacaatgtagttg
tggctggtctggaacttgctaataggctggcctcaaactcacagagatcc
aactgccttcctctgcctcctgagtgctggaaatatacacataacacgaa
atggtacaaaatgatgaagaatgtacgtgaaggaaagattacagatttct
ggaactttaagtagcagcatagtttcatagggaagtaagaaggtgagaga
agagagccaaggcctatgttgtagccataatcaatagataatgctttcag
tagctccatcaaggcgagatcactcagaggctaaaagcactcccctgctc
ctcaggagaaacagggctctttctgttccccagcgctcatactgcagctg
acaaccgcctgtaactccctgaggctctgacctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_77912383_77913511
seq2: B6Ng01-135H19.b_42_1161

seq1  GAATTCCATTTCTTAAAAATAATCTTGTCCCTATCATTAACCACTTAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTCTTAAAAATAATCTTGTCCCTATCATTAACCACTTAATG  50

seq1  TTTTTGCTGATGTGCTAAAAAGTGCACTGGCAACTCAGAATAGGTTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCTGATGTGCTAAAAAGTGCACTGGCAACTCAGAATAGGTTTGTT  100

seq1  TTTTAAGTTGGCCATGTCTTTTTAATAGACTGCAGTCTTCAAATTTATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTTGGCCATGTCTTTTTAATAGACTGCAGTCTTCAAATTTATAT  150

seq1  AGAGCTGCAGTCTCCTGGATTTTTTCAAGTGTCACACATCTAACTGAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGCAGTCTCCTGGATTTTTTCAAGTGTCACACATCTAACTGAGTC  200

seq1  TGACAGCTGAGAAAGGCCACCAGGTGCTTACAGTCAGTTTAAAAAACATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCTGAGAAAGGCCACCAGGTGCTTACAGTCAGTTTAAAAAACATC  250

seq1  CTCTACCTGGTATCTCTGCAGTGATTGTCTTGCTGCTCCCTGAAACCTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCTGGTATCTCTGCAGTGATTGTCTTGCTGCTCCCTGAAACCTCG  300

seq1  TCATCATCATCTGAGGAACTCGTGCTTGAGTCACAAGTCAGGTCACTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATCATCTGAGGAACTCGTGCTTGAGTCACAAGTCAGGTCACTGTC  350

seq1  ACTGGTACTACTGTCCTGCAGCAGGTTGTACTTCTTCCTTGCAGCTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTACTACTGTCCTGCAGCAGGTTGTACTTCTTCCTTGCAGCTGCCT  400

seq1  CCCGTTTCTGCCTCAGTAGTCTGATCCTCTCCTTGTGCTTTTGGCTCCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTTTCTGCCTCAGTAGTCTGATCCTCTCCTTGTGCTTTTGGCTCCGA  450

seq1  TGACCTTTAACCTTGGTGACTCTGCCATTCTGCTTATCGCTGGATTGCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTTAACCTTGGTGACTCTGCCATTCTGCTTATCGCTGGATTGCCG  500

seq1  GTTTTTCTTGGCAGCCATAGTAGATGTTTCACTTTCAGAACGGGACCGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCTTGGCAGCCATAGTAGATGTTTCACTTTCAGAACGGGACCGCC  550

seq1  GAGACTTTCGTCCAACAGTGGCACCAGACACTCCTGAAGTATCTCCTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTTCGTCCAACAGTGGCACCAGACACTCCTGAAGTATCTCCTTCC  600

seq1  ACGGTTGTTTCTGCTTGCGAGGGTTCATTCTCTTCAACAGAAGACAATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTTGTTTCTGCTTGCGAGGGTTCATTCTCTTCAACAGAAGACAATGT  650

seq1  ATCTGAATCAGCCAAATGGCCACTAGAGGAAGGGGAAAGCATGCAATGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAATCAGCCAAATGGCCACTAGAGGAAGGGGAAAGCATGCAATGAT  700

seq1  TAGAGGAGTCACTCTCATAAACTCGGCCAGTTGTGGGCTTGTCACTCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGAGTCACTCTCATAAACTCGGCCAGTTGTGGGCTTGTCACTCTCT  750

seq1  GTGGATGCTAACTGAGACTCTGAAGAGTCCCTTCTCAGTTCCATCAACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGCTAACTGAGACTCTGAAGAGTCCCTTCTCAGTTCCATCAACAA  800

seq1  ACAGGGCATTGAAGAGAGAACTGTAGAGTCAGCTACACCATCTTTCTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGCATTGAAGAGAGAACTGTAGAGTCAGCTACACCATCTTTCTGAA  850

seq1  CTTGAGATTCCAGTTCTACAGAGCCATCTTCTTCCTTGGCTGTCTCTTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGATTCCAGTTCTACAGAGCCATCTTCTTCCTTGGCTGTCTCTTGT  900

seq1  TCAGATGCTTTTGGTGGGGCTGCAGACTCAATGAGTTCTTCAACTTTTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGCTTTTGGTGGGGCTGCAGACTCAATGAGTTCTTCAACTTTTCC  950

seq1  CACTGCCTCCTCCATCTTCATCTCAGAATTCCAAATTAAATCATGGAACG  1000
      ||||| |||||||||||||||||||||  |||||||||||||||||||||
seq2  CACTG-CTCCTCCATCTTCATCTCAGA--TCCAAATTAAATCATGGAACG  997

seq1  GAGTCTAGGAAACGATA-TCAAAGGTGCAACAGGGAAGCAGCCTGTATGA  1049
      ||||||||||||||||| ||||||||||||||||| |||||| |||||| 
seq2  GAGTCTAGGAAACGATATTCAAAGGTGCAACAGGG-AGCAGCTTGTATG-  1045

seq1  AAACACACAAAGTCAATGACTAGAAATGGAAGACTATTTAACCTAGGCAG  1099
      |||||||||| ||| |||||||||||||| ||||||||||  ||| ||||
seq2  AAACACACAAGGTC-ATGACTAGAAATGG-AGACTATTTA--CTA-GCAG  1090

seq1  CA-TCCTATTTTTCTGAGTGGCAAAAGGTAC  1129
      || |||||||||||||||| || ||||||||
seq2  CATTCCTATTTTTCTGAGT-GCCAAAGGTAC  1120

seq1: chr18_78041486_78042217
seq2: B6Ng01-135H19.g_67_801 (reverse)

seq1  GCAGGTCAGAGCCTCA-GGAGTTACAGGCGGTTGTCAGCTGCAGTATGAG  49
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GCAGGTCAGAGCCTCAGGGAGTTACAGGCGGTTGTCAGCTGCAGTATGAG  50

seq1  CGCT-GGGAACAGAAAGAGCCCTGTTTCTCCTGAGGAGCA-GGGAGTGCT  97
      |||| ||||||||||||||||||||||||||||||||||| |||||||||
seq2  CGCTGGGGAACAGAAAGAGCCCTGTTTCTCCTGAGGAGCAGGGGAGTGCT  100

seq1  TTTAGCCTCTGAGTGATCTCGCCTTGATGGAGCTACTGAAAGCATTATCT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCCTCTGAGTGATCTCGCCTTGATGGAGCTACTGAAAGCATTATCT  150

seq1  ATTGATTATGGCTACAACATAGGCCTTGGCTCTCTTCTCTCACCTTCTTA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTATGGCTACAACATAGGCCTTGGCTCTCTTCTCTCACCTTCTTA  200

seq1  CTTCCCTATGAAACTATGCTGCTACTTAAAGTTCCAGAAATCTGTAATCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTATGAAACTATGCTGCTACTTAAAGTTCCAGAAATCTGTAATCT  250

seq1  TTCCTTCACGTACATTCTTCATCATTTTGTACCATTTCGTGTTATGTGTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCACGTACATTCTTCATCATTTTGTACCATTTCGTGTTATGTGTA  300

seq1  TATTTCCAGCACTCAGGAGGCAGAGGAAGGCAGTTGGATCTCTGTGAGTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCAGCACTCAGGAGGCAGAGGAAGGCAGTTGGATCTCTGTGAGTT  350

seq1  TGAGGCCAGCCTATTAGCAAGTTCCAGACCAGCCACAACTACATTGTCTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCCAGCCTATTAGCAAGTTCCAGACCAGCCACAACTACATTGTCTC  400

seq1  AGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  450

seq1  AGAGAGAATATGAATCACCACCGCTGCCTGAGTTCTCAGGCTGTAAGAGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAATATGAATCACCACCGCTGCCTGAGTTCTCAGGCTGTAAGAGG  500

seq1  GTTGTTTATTGAGAGCTATATGTACACCGCCATCTCCTCTTTGTTCTCGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTATTGAGAGCTATATGTACACCGCCATCTCCTCTTTGTTCTCGA  550

seq1  TTTTCCTGGCCATTCTCATTGTTATTTTTTTCCTTATTCATGATTGTCTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGGCCATTCTCATTGTTATTTTTTTCCTTATTCATGATTGTCTG  600

seq1  GAGCCCACCACATCCTTTTCCTTTTAAATGCTCCATTATACGAAGTACTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCACCACATCCTTTTCCTTTTAAATGCTCCATTATACGAAGTACTT  650

seq1  AAAAAAAAATCTTTCTAAGCCAGGTGTGGCACACACACCCATAATCTCAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAATCTTTCTAAGCCAGGTGTGGCACACACACCCATAATCTCAA  700

seq1  AACTTGGGAAATTGAGCCATGAGGCTCTTGAATTC  732
      |||||||||||||||||||||||||||||||||||
seq2  AACTTGGGAAATTGAGCCATGAGGCTCTTGAATTC  735