BAC Information

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BAC

Clone NameB6Ng01-135L03
Chromosome18 (Build37)
Map Location 60,709,284 - 60,826,066
singlet/doubletdoublet
Overlap geneDctn4, Rbm22, Myoz3, Synpo, LOC100042675
Upstream geneLOC667549, EG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik
Downstream geneNdst1, Rps14, LOC667619, Cd74, Tcof1, LOC100042699, Arsi, Camk2a, Slc6a7, Cdx1, Pdgfrb, Csf1r, A630042L21Rik, Slc26a2, Pde6a, EG667279, Ppargc1b, LOC667675, 4933429F08Rik, Csnk1a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135L03.bB6Ng01-135L03.g
ACCDH935668DH935669
length1,0241,146
definitionDH935668|Mus musculus domesticus DNA, BAC clone: B6Ng01-135L03, 5' end.DH935669|Mus musculus domesticus DNA, BAC clone: B6Ng01-135L03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,825,513 - 60,826,066)(60,709,284 - 60,710,446)
sequence
ttaactctctctctctctctctctctctagatttgtttttttttttatct
gtaactgtatgtatgtatatgaacctgccatgcacttaatgcaggcagcc
gggcaggccagggacaactgagatgtgagatggagtcacaggtagttgtg
cgctacctaatgtggatgctgggaactcagctgaactgaacctgggtcct
ctgcaagagcagcatgcacttttaactgctgagccatctctccagcccag
agttgactcttgagtatcagcttcatctgtgtgttctgagtacatgggag
tgtctgacaaatatcaatcatcatgtttttttttttttcctgggtctcca
ctttctgttttatgagtatcttaaaactaatttaaatttttttctttaaa
aattacttgtttttattttatagatatgagtgtagatatgtaagtatgtg
tagataggtgctatatgcatgcctggtattcccagggccagaagagggca
tttggagttgtggatgattatgaggccaccatgtgggtgctggggacaga
agcaggtcctttccaggagcccccagggcaagtagctgaccagcaagctc
tgaggacctgcctgtctcccatcttgccactgctgggattccaagcaaac
agcacaacacctggctttcccatgggttctggggaattaggtctttcatg
gttttaaggccagcacttgtgggtgatggtggtgtgtgctgtgcctttca
ttcaagcctggggcagatccttgtgagtcgaggccagcctggtctatggg
attgagctcctggacagccagggctacacagagaatcttctgtctcgaaa
acaaaaccaaccaaaacaaacaggtcagattttcactgactggctatttc
atctttgctgattgggcatcaccttcttcactatgattgggccatctctt
ctcttcattatgagccatttcatcatctgtttgttttctttgttggtatt
tgagggaaagtcttacttggagcc
gaattctaagattaagaaagagaggacaaaggaatatatagacttcccct
ttgtattgtgaaaacagaacaagagagatgtctgcctagattggccctgc
agagaggaaacaaacacattgtaatgtactctatatactagacactgctt
tgtactacttaaagatatttttaacaaggttatataagtcattagtttta
attacttgcttccattcatactgatctccaaagttatatacgttactcct
ccttgggtcccatcttaaacatctataaagtgagaacactaacagctgtg
cacagtgatgtaatgaagccagtgtggtgcttgtctaagttggtgtgtgc
ataagcactacatgctgtgatattagtgatgcttcatatgtgttctataa
tttttggttatcagtagcataaattctgttctagaatttatagactttgg
acaggacaaaatataaaattctggtaactaccttctgtctgcttgtttgt
tctgtggctcttcaggtgtattcttgtttccctctgatatgtacttttct
ttttagaaatgtgagcacaacttgagcaagccagaatttaatccaacatc
tatcaaattcaaaatccagttggttgctgtgtaagtattttagggtgttg
attgagatttttttcaatggggattatcttttttaaaaaaatctaaagaa
aagaaaaatcacatagagatagtcttttctttctattcctattccggttt
tgcatttacttgagtagcatgaagtctcaagtgtatctgtaagtgtggaa
tcaaggctgtgtggcctgaaattatggcacatcctggactcctacctttc
cgggaagacagaagcagagtgtgtttgcatcagtgagtgttgtgatggga
agggaccagtcatatacagatttaaatatctaacttagactttttaaatc
aaatttaaagcatagcaatttaagcacactcgaaacaacattttatttta
ctttggttctgataacatctcactgagtgtaaaggtgattaattagtgta
ctctacggggatggtcaatggctattgaccataagggcacatttaggagc
tagctaactgatgctaatgggaaagcatttctggaacgctctgaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_60825513_60826066
seq2: B6Ng01-135L03.b_534_1077 (reverse)

seq1  GGCTCCAAAGTAAGACTTTCCCTCAAAACAAACAAACAAAAGAAAACAAA  50
      |||||| |||||||||||||||||||   | || ||| ||||||||||||
seq2  GGCTCC-AAGTAAGACTTTCCCTCAA---ATACCAAC-AAAGAAAACAAA  45

seq1  CAGAATGATGGAGATGGCTCACTAGTGAAGAG-AGAGATGGCCCAATCAC  99
      ||| ||||| || |||||||| || ||||||| |||||||||||||||| 
seq2  CAG-ATGAT-GAAATGGCTCA-TAATGAAGAGAAGAGATGGCCCAATCA-  91

seq1  TAGTGAAGAGGGTGATGCCCCAGTCAGCAAAGATGGAAATAGCCAGTCAG  149
      ||||||||| ||||||| |||| ||||||||||| |||||||||||||||
seq2  TAGTGAAGAAGGTGATG-CCCAATCAGCAAAGAT-GAAATAGCCAGTCAG  139

seq1  TGAAATGCTGACCTTGTTTGTTTTGGTTTGGTTTTGGTTTTCGAGACAG-  198
      |||||  |||||| |||||||||||| |||||||| ||||||||||||| 
seq2  TGAAAATCTGACC-TGTTTGTTTTGG-TTGGTTTT-GTTTTCGAGACAGA  186

seq1  AGATTCTCTGTGTAGCCCTGGCTGTCCAGGAGCTC-ATTCCATAGACCAG  247
      ||||||||||||||||||||||||||||||||||| || |||||||||||
seq2  AGATTCTCTGTGTAGCCCTGGCTGTCCAGGAGCTCAATCCCATAGACCAG  236

seq1  GCTGGCCTCGAACTCACAGGGATCTG-CCCAGGCTTGAATGAAAGGCACA  296
      |||||||||| ||||||| ||||||| |||||||||||||||||||||||
seq2  GCTGGCCTCG-ACTCACAAGGATCTGCCCCAGGCTTGAATGAAAGGCACA  285

seq1  GCACACACCACCATCACCCACAAGTGCTGGCCTTAAAACCATG-AAGACC  345
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCACACACCACCATCACCCACAAGTGCTGGCCTTAAAACCATGAAAGACC  335

seq1  TAATTCCCCAGAACCCATGGGAAAGCCAGGTGTTGTGCTGTTTGCTTGGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCCCAGAACCCATGGGAAAGCCAGGTGTTGTGCTGTTTGCTTGGA  385

seq1  ATCCCAGCAGTGGCAAGATGGGAGACAGGCAGGTCCTCAGAGCTTGCTGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCAGTGGCAAGATGGGAGACAGGCAGGTCCTCAGAGCTTGCTGG  435

seq1  TCAGCTACTTGCCCTGGGGGCTCCTGGAAAGGACCTGCTTCTGTCCCCAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTACTTGCCCTGGGGGCTCCTGGAAAGGACCTGCTTCTGTCCCCAG  485

seq1  CACCCACATGGTGGCCTCATAATCATCCACAACTCCAAATGCCCTCTTCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACATGGTGGCCTCATAATCATCCACAACTCCAAATGCCCTCTTCT  535

seq1  GGCCCTGGG  554
      |||||||||
seq2  GGCCCTGGG  544

seq1: chr18_60709284_60710446
seq2: B6Ng01-135L03.g_68_1213

seq1  GAATTCTAAGATTAAGAAAGAGAGGACAAAGGAATATATAGACTTCCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGATTAAGAAAGAGAGGACAAAGGAATATATAGACTTCCCCT  50

seq1  TTGTATTGTGAAAACAGAACAAGAGAGATGTCTGCCTAGATTGGCCCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTGTGAAAACAGAACAAGAGAGATGTCTGCCTAGATTGGCCCTGC  100

seq1  AGAGAGGAAACAAACACATTGTAATGTACTCTATATACTAGACACTGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGAAACAAACACATTGTAATGTACTCTATATACTAGACACTGCTT  150

seq1  TGTACTACTTAAAGATATTTTTAACAAGGTTATATAAGTCATTAGTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTACTTAAAGATATTTTTAACAAGGTTATATAAGTCATTAGTTTTA  200

seq1  ATTACTTGCTTCCATTCATACTGATCTCCAAAGTTATATACGTTACTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTGCTTCCATTCATACTGATCTCCAAAGTTATATACGTTACTCCT  250

seq1  CCTTGGGTCCCATCTTAAACATCTATAAAGTGAGAACACTAACAGCTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGTCCCATCTTAAACATCTATAAAGTGAGAACACTAACAGCTGTG  300

seq1  CACAGTGATGTAATGAAGCCAGTGTGGTGCTTGTCTAAGTTGGTGTGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGATGTAATGAAGCCAGTGTGGTGCTTGTCTAAGTTGGTGTGTGC  350

seq1  ATAAGCACTACATGCTGTGATATTAGTGATGCTTCATATGTGTTCTATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCACTACATGCTGTGATATTAGTGATGCTTCATATGTGTTCTATAA  400

seq1  TTTTTGGTTATCAGTAGCATAAATTCTGTTCTAGAATTTATAGACTTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGTTATCAGTAGCATAAATTCTGTTCTAGAATTTATAGACTTTGG  450

seq1  ACAGGACAAAATATAAAATTCTGGTAACTACCTTCTGTCTGCTTGTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACAAAATATAAAATTCTGGTAACTACCTTCTGTCTGCTTGTTTGT  500

seq1  TCTGTGGCTCTTCAGGTGTATTCTTGTTTCCCTCTGATATGTACTTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGCTCTTCAGGTGTATTCTTGTTTCCCTCTGATATGTACTTTTCT  550

seq1  TTTTAGAAATGTGAGCACAACTTGAGCAAGCCAGAATTTAATCCAACATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAAATGTGAGCACAACTTGAGCAAGCCAGAATTTAATCCAACATC  600

seq1  TATCAAATTCAAAATCCAGTTGGTTGCTGTGTAAGTATTTTAGGGTGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAATTCAAAATCCAGTTGGTTGCTGTGTAAGTATTTTAGGGTGTTG  650

seq1  ATTGAGATTTTTTTCAATGGGGATTATCTTTTTTAAAAAAATCTAAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGATTTTTTTCAATGGGGATTATCTTTTTTAAAAAAATCTAAAGAA  700

seq1  AAGAAAAATCACATAGAGATAGTCTTTTCTTTCTATTCCTATTCCGGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAATCACATAGAGATAGTCTTTTCTTTCTATTCCTATTCCGGTTT  750

seq1  TGCATTTACTTGAGTAGCATGAAGTCTCAAGTGTATCTGTAAGTGTGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTACTTGAGTAGCATGAAGTCTCAAGTGTATCTGTAAGTGTGGAA  800

seq1  TCAAGGCTGTGTGGCCTGAAATTATGGCACATCCTGGACTCCTACC-TTC  849
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCAAGGCTGTGTGGCCTGAAATTATGGCACATCCTGGACTCCTACCTTTC  850

seq1  CGGGAAGACAGAAGCAGGAGTGTGTTTGCATCAGTGAGTGTTGTGATGGG  899
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CGGGAAGACAGAAGCA-GAGTGTGTTTGCATCAGTGAGTGTTGTGATGGG  899

seq1  AAGGGACCAGTCATTATTACAGATTTAAAATATCTAACTTAAGACCTTTT  949
      ||||||||||||||   ||||||||| ||||||||||||| ||| |||||
seq2  AAGGGACCAGTCAT--ATACAGATTT-AAATATCTAACTT-AGA-CTTTT  944

seq1  TAAATCAAATTTAAAGCATAGCAAATTTAAGCACACTCCGAAACAACA-T  998
      |||||||||||||||||||||| |||||||||||||| |||||||||| |
seq2  TAAATCAAATTTAAAGCATAGC-AATTTAAGCACACT-CGAAACAACATT  992

seq1  TTATTTTACTTCTTGGTTCTGATAACATCTCACTGAGTGGTAAAGGTGAT  1048
      ||||||||||  |||||||||||||||||||||||||| |||||||||||
seq2  TTATTTTACT--TTGGTTCTGATAACATCTCACTGAGT-GTAAAGGTGAT  1039

seq1  TAAATTAGTGTTAACTCACTGGGGATTGTCAATGGCTATTGACCATTAAG  1098
      | |||||||||  ||||   |||||| |||||||||||||||||| ||||
seq2  T-AATTAGTGT--ACTCTACGGGGATGGTCAATGGCTATTGACCA-TAAG  1085

seq1  GAGCACATTGA-GAGCCAGCCAACTAGATGGCTCAGTGGGGAAAGCATTT  1147
      | ||||||| | |||| ||| |||| ||| ||| |   ||||||||||||
seq2  G-GCACATTTAGGAGCTAGCTAACT-GAT-GCTAA--TGGGAAAGCATTT  1130

seq1  CTGGAACAGCCTGACA  1163
      |||||||   ||||||
seq2  CTGGAACGCTCTGACA  1146