BAC Information

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BAC

Clone NameB6Ng01-135O23
Chromosome13 (Build37)18 (Build37)
Map Location 60,312,485 - 60,312,57939,870,505 - 39,871,636
singlet/doubletsingletsinglet
Overlap geneEG328264
Upstream geneAgtpbp1, Mak10, Golph2, 4921517D22Rik, 1700013B16Rik, EG238662, 4932411G14Rik, Isca1, Zcchc6, LOC100041267, Gas1
Downstream geneDapk1, LOC218274, BC051665, 2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa, Ctsj, Ctsq, Ctsr, Cts6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135O23.bB6Ng01-135O23.g
ACCDH935850DH935851
length1671,126
definitionDH935850|Mus musculus domesticus DNA, BAC clone: B6Ng01-135O23, 5' end.DH935851|Mus musculus domesticus DNA, BAC clone: B6Ng01-135O23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(60,312,485 - 60,312,579)(39,870,505 - 39,871,636)
sequence
cagaggggtatgctagcttaggggagtttggggtgcccagcaagttaggc
atgttgaaattaagctgccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtatgagagagagagagagagagatagagagat
attagttagagacagag
gaattctgtgcaataccccatagctggacatagcataagagtaaaagact
gtacggttttagaagaacctgacacccgaaataccaagatatcagcagct
gtcaccattcattggtgaaagggcatgattttagcttcccatgtttcttt
aaaggggaaagaaccccctgtctcactggtcattgttcaccttctatgat
tctagctggtggggtgagcactgagagcatgcatctcatctaaacaaaac
aaaaccaaaagttgacgcttgcacatggcaaggtgcaccacagcaaggtt
cctcatagaggagacatcatagcttgctaggaagttcagataggtgtgag
cacccactcaaggacagcatcagagaatgggtccaggtcactctgtgaag
ttaacatcttctgaggtcttaggcacagtccttggtgtgcctatgagggg
caatagccaacaactgttgagggtgagtattactgcctttaaccttagga
aactcatccaatctcatccatctggaattttctgaagcccaacccaccca
tcaatgtcaaaattagaatgagaggaaactgtctgatgaaacacccttcc
atcctttcatgttatgggtgagaaatggctggctttgttttccttccctc
tgaagaaaaaaacagctcagagcagattagaatgtctagttttaatatct
tcacttcaagatgcctttatagtcctggattgtcccatcaagctgagtta
caactccattataatgccacattcaatatttttttgtgtaatccccgaaa
acaccaatcactggatgtcagaacacagtaagggaatttcccccatacca
aaaaattatttgaattcataatggctatggatgggcaggaaataaggaca
cagaagacatgaatggctgtcagtagagatcttgaacctcattaattcag
gctttcttctcagtagcccttagggtcactggatttacaggcagccaggt
gatggagcccactggagtgccattttgaaggagagcttgtgaccagactg
agggagtagccattagcccactgagcagcaaaaatgaaacttgctagcca
attgcctggctcatgccaggaaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_60312485_60312579
seq2: B6Ng01-135O23.b_129_222 (reverse)

seq1  CTCTGTCTCTCTCT-CTCTCTCTCTGTCTCTCTCTCTCTCTCTCTCTCAC  49
      ||||||||||  ||  | ||||||| ||||||||||||||||||||  ||
seq2  CTCTGTCTCTAACTAATATCTCTCTATCTCTCTCTCTCTCTCTCTCATAC  50

seq1  ACACACACACACACACACACGCACACACACACACACACACACACAC  95
      |||||||||||||||||||| |||||||||||||||||||||||  
seq2  ACACACACACACACACACACACACACACACACACACACACACAC--  94

seq1: chr18_39870505_39871636
seq2: B6Ng01-135O23.g_67_1192 (reverse)

seq1  TCCCTCTCCTGGGCAATGAGCCAGGCAA-TGGCTAGCAAGTCTCATTTCT  49
      ||||| ||||||   ||||||||||||| |||||||||||| |||||| |
seq2  TCCCT-TCCTGG--CATGAGCCAGGCAATTGGCTAGCAAGTTTCATTTTT  47

seq1  GCTGCTCAGT-GGCTAATGGCTACTCCTTCAGTCTGGTCAC-AGCTCTCC  97
      |||||||||| |||||||||||||||| ||||||||||||| ||||||||
seq2  GCTGCTCAGTGGGCTAATGGCTACTCCCTCAGTCTGGTCACAAGCTCTCC  97

seq1  TTCAAAATGGCACTCCAGTGGGCTCCATCCACCTGGCTGCCTGTAAATCC  147
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTCAAAATGGCACTCCAGTGGGCTCCAT-CACCTGGCTGCCTGTAAATCC  146

seq1  AGTGACCCTAAGGGCTACTGAGAAGAGAGCCTGAATTAATGAGGTTCAAG  197
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGTGACCCTAAGGGCTACTGAGAAGAAAGCCTGAATTAATGAGGTTCAAG  196

seq1  ATTCTCTACTGACAGCCATTCATGTTCTTTCTGTTGTCCTTATTTCCCTG  247
      | |||||||||||||||||||||||   ||||| ||||||||||| ||||
seq2  A-TCTCTACTGACAGCCATTCATGT--CTTCTG-TGTCCTTATTT-CCTG  241

seq1  GCCATCCATAGCCATTATGAATTCAAATAAATTTTTTGGTATGGGGG-AA  296
       ||||||||||||||||||||||||||| |||||||||||||||||| ||
seq2  CCCATCCATAGCCATTATGAATTCAAAT-AATTTTTTGGTATGGGGGAAA  290

seq1  TTTCCTTACTGTGTTCTGACATCCAGTGATTGGTGTTTTCGGGGATTACA  346
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTACTGTGTTCTGACATCCAGTGATTGGTGTTTTCGGGGATTACA  340

seq1  CAAAAAAATATTGAATGTGGCATTATAATGGAGTTGTAACTCAGCTTGAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAATATTGAATGTGGCATTATAATGGAGTTGTAACTCAGCTTGAT  390

seq1  GGGACAATCCAGGACTATAAAGGCATCTTGAAGTGAAGATATTAAAACTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAATCCAGGACTATAAAGGCATCTTGAAGTGAAGATATTAAAACTA  440

seq1  GACATTCTAATCTGCTCTGAGCTGTTTTTTTCTTCAGAGGGAAGGAAAAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCTAATCTGCTCTGAGCTGTTTTTTTCTTCAGAGGGAAGGAAAAC  490

seq1  AAAGCCAGCCATTTCTCACCCATAACATGAAAGGATGGAAGGGTGTTTCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAGCCATTTCTCACCCATAACATGAAAGGATGGAAGGGTGTTTCA  540

seq1  TCAGACAGTTTCCTCTCATTCTAATTTTGACATTGATGGGTGGGTTGGGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACAGTTTCCTCTCATTCTAATTTTGACATTGATGGGTGGGTTGGGC  590

seq1  TTCAGAAAATTCCAGATGGATGAGATTGGATGAGTTTCCTAAGGTTAAAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAAATTCCAGATGGATGAGATTGGATGAGTTTCCTAAGGTTAAAG  640

seq1  GCAGTAATACTCACCCTCAACAGTTGTTGGCTATTGCCCCTCATAGGCAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAATACTCACCCTCAACAGTTGTTGGCTATTGCCCCTCATAGGCAC  690

seq1  ACCAAGGACTGTGCCTAAGACCTCAGAAGATGTTAACTTCACAGAGTGAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGGACTGTGCCTAAGACCTCAGAAGATGTTAACTTCACAGAGTGAC  740

seq1  CTGGACCCATTCTCTGATGCTGTCCTTGAGTGGGTGCTCACACCTATCTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACCCATTCTCTGATGCTGTCCTTGAGTGGGTGCTCACACCTATCTG  790

seq1  AACTTCCTAGCAAGCTATGATGTCTCCTCTATGAGGAACCTTGCTGTGGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCTAGCAAGCTATGATGTCTCCTCTATGAGGAACCTTGCTGTGGT  840

seq1  GCACCTTGCCATGTGCAAGCGTCAACTTTTGGTTTTGTTTTGTTTAGATG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTTGCCATGTGCAAGCGTCAACTTTTGGTTTTGTTTTGTTTAGATG  890

seq1  AGATGCATGCTCTCAGTGCTCACCCCACCAGCTAGAATCATAGAAGGTGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCATGCTCTCAGTGCTCACCCCACCAGCTAGAATCATAGAAGGTGA  940

seq1  ACAATGACCAGTGAGACAGGGGGTTCTTTCCCCTTTAAAGAAACATGGGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGACCAGTGAGACAGGGGGTTCTTTCCCCTTTAAAGAAACATGGGA  990

seq1  AGCTAAAATCATGCCCTTTCACCAATGAATGGTGACAGCTGCTGATATCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAAATCATGCCCTTTCACCAATGAATGGTGACAGCTGCTGATATCT  1040

seq1  TGGTATTTCGGGTGTCAGGTTCTTCTAAAACCGTACAGTCTTTTACTCTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTTCGGGTGTCAGGTTCTTCTAAAACCGTACAGTCTTTTACTCTT  1090

seq1  ATGCTATGTCCAGCTATGGGGTATTGCACAGAATTC  1132
      ||||||||||||||||||||||||||||||||||||
seq2  ATGCTATGTCCAGCTATGGGGTATTGCACAGAATTC  1126