BAC Information

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BAC

Clone NameB6Ng01-136L17
Chromosome18 (Build37)
Map Location 35,043,724 - 35,245,395
singlet/doubletdoublet
Overlap geneEtf1, Hspa9, LOC100041377, EG626954, LOC100041951
Upstream geneEpb4.1l4a, EG666296, Ppia-ps18_318.1, Ppia-ps18_319.1, LOC666313, Apc, Srp19, Reep5, Pkd2l2, 2610024E20Rik, Wnt8a, Nme5, 4933408B17Rik, Brd8, Kif20a, Cdc23, Gfra3, Cdc25c, LOC100041859, 2810012G03Rik, LOC100041879, LOC100041887, Jmjd1b, Reep2, Egr1
Downstream geneCtnna1, Lrrtm2, Sil1, LOC100041423, LOC666460, LOC666462, EG383341, EG436583, Matr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5, LOC100042131, Psd2, LOC100042150
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136L17.bB6Ng01-136L17.g
ACCDH936428DH936429
length1,1381,071
definitionDH936428|Mus musculus domesticus DNA, BAC clone: B6Ng01-136L17, 5' end.DH936429|Mus musculus domesticus DNA, BAC clone: B6Ng01-136L17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,244,248 - 35,245,395)(35,043,724 - 35,044,795)
sequence
gaattccataccatggccccttaggatggaaatttaatgttatagatgct
cacaaagttgtttgctactccccaggtttcagaatctccacccacacctt
cagtacattctaccaaatacaaggaagtaccctggatagaacctgtttag
ggattctttgctcacagggaagtttcaggacctactgttgagatgaacac
tcctctgtaatgtggtgtgaacacacacacaccacacacacacaaaaccc
actttcagttgaagtagtcaaagctacatcctcccacaccctctcctgtc
tgcaatagagcatccctgcaggcagttggagcaaacccagggtcccaggg
tcctggtactgtaggaacagctctcccacccccacccccacccccacccc
caaccccacccccagcagcatgctatggatgtaagggcttgtgctaacag
gaggctccacatattatattaacatcacaaaagttaatgggccagaaagg
aaaaaaattaacataaattacctttagctaccttctctggcagctagaaa
acaaatcctatgtaatgcctgaggaaaatcaggccttgggaagctgcatc
ctgaacaggctacataataataaccccagaaaacagtaactccccatctt
gccggtttattgtgacaaaatgtgcagagcaagcaacagaaggagactag
cttcttctctgtggctctctggcgactgtttgcctagagtttctgagagc
acaatactctgcactcaggacctctctcttaggtactgcacctttcccgc
atccagggtctctctcgagtgtctttgggtcctgacagtgagagaaacga
tttgttaggaaactacctctttgtatgtgaaagataaatctttatctgtt
catggagactttggatggaccactatgtatggaggattggagagaaacgg
ttcttagatgtgggggctgggaaagtgagatgtgagagaaagaaagcaat
ctgtatctcttaacaaagcatcccagcattgagaaaggaacatgataccc
atgggcagcaatgacagggactcaagggagtgacaatgcccagaacacac
tcttagtgcttctgtgatgactgataatcaggctgtgt
gaattctatctaacccttacctctgctgcttcaggattagttgatggcag
gtgtattccctgaaaccggcacacaaaagtaagttctcttacactgggca
acacccccacccttgaaccgcatcttaaaaactttgaaaagtttgtttgt
ttatatttgtttatttatttatttactgtgggtaggtgtaccgcagtgta
cctgggcagatcaacttatgggaaccagttcttccaggagagtcctgggg
atcaaacttgggttctcaggctcagtggcttgttacctttggagcaagac
atcctgacagttgaatgacatcaggaaagggcaggagagggaaggaggag
gagagctggggaactctgcttcctgagagccgcctctccatccttcaatc
cagcacctgctgctgagctctgcctggggctccttttagagacttctgaa
atcccgtgaggatccgcatcagtcttcccacgtacaatggtggcacttga
cgccaaagtcttcccagccagcgagagaaatggaagtttcctccggttct
ccgagtctatcttcccctcccttttgcgggggagctgactgctctctgga
gggaccgagggaagccgctgggctggctctaatgtgattttgcctagatg
gagctggcagctgggaaccactttccctcggcttgccctctgctgggaat
ctccatgacggagacagctggcttgaggctgctggggctgctttcgagcc
agaaagggccacacaggaactttcagccagagacagatgctggggccacc
attctttcttgagcaatcccgtgagagacaatgctttggggggaaggttg
gcttgctctaggcccagaagcaatacaaattaaaaataatagaggaggag
aagcagacagaacggagagtgagacctcacagtaaggacttggagcagca
ttctgaaaggccaaatgtggggtgctagatcgggtgatcctggtcatgct
ttttaagatgttagctcggaattctaactttcccatttctttctttcctt
tttttttgggggggggtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_35244248_35245395
seq2: B6Ng01-136L17.b_43_1180 (reverse)

seq1  ACACAGGCCTGAATTATCAGTCATACCACAGGAAGCACTTAGAGCTGTGT  50
      ||||| ||||| ||||||||||||  |||| |||||||| |||| |||||
seq2  ACACA-GCCTG-ATTATCAGTCAT--CACA-GAAGCACTAAGAG-TGTGT  44

seq1  CTGGGGCATGGTCACTCCCTTGGGTCCCCTGGTCATTGCTGCCCCTGGGT  100
         |||||| |||||||||||| |||||   ||||||||||||| |||||
seq2  TCTGGGCATTGTCACTCCCTTGAGTCCC--TGTCATTGCTGCCCATGGGT  92

seq1  ATCATGTTCC-TTCTCAATGCTGGGGATGCTTTGTT-AGAGATACAGATT  148
      |||||||||| ||||||||||| ||||||||||||| |||||||||||||
seq2  ATCATGTTCCTTTCTCAATGCT-GGGATGCTTTGTTAAGAGATACAGATT  141

seq1  GGCTTTCTGTCTCCTCACATCTCACTTTCCCAG-CCCCACATTCTAAGAA  197
       ||||||| ||| |||||||||||||||||||| ||||||| ||||||||
seq2  -GCTTTCTTTCT-CTCACATCTCACTTTCCCAGCCCCCACA-TCTAAGAA  188

seq1  CCGTTTCTCTCCAATCCTCCATTACATAGTGGTCCATCCAAGGTCTCCAT  247
      ||||||||||||||||||||| ||||||||||||||||||| ||||||||
seq2  CCGTTTCTCTCCAATCCTCCA-TACATAGTGGTCCATCCAAAGTCTCCAT  237

seq1  GAACAGATAAAGATTTATCTTTCACATACAAAGAGGTAGTTTCCTAACAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGATAAAGATTTATCTTTCACATACAAAGAGGTAGTTTCCTAACAA  287

seq1  ATCGTTTCTCTCACTGTCAGGACCCAAAGACACTCGAGAGAGACCCTGGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTTTCTCTCACTGTCAGGACCCAAAGACACTCGAGAGAGACCCTGGA  337

seq1  TGCGGGAAAGGTGCAGTACCTAAGAGAGAGGTCCTGAGTGCAGAGTATTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGGAAAGGTGCAGTACCTAAGAGAGAGGTCCTGAGTGCAGAGTATTG  387

seq1  TGCTCTCAGAAACTCTAGGCAAACAGTCGCCAGAGAGCCACAGAGAAGAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCAGAAACTCTAGGCAAACAGTCGCCAGAGAGCCACAGAGAAGAA  437

seq1  GCTAGTCTCCTTCTGTTGCTTGCTCTGCACATTTTGTCACAATAAACCGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTCTCCTTCTGTTGCTTGCTCTGCACATTTTGTCACAATAAACCGG  487

seq1  CAAGATGGGGAGTTACTGTTTTCTGGGGTTATTATTATGTAGCCTGTTCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGGGGAGTTACTGTTTTCTGGGGTTATTATTATGTAGCCTGTTCA  537

seq1  GGATGCAGCTTCCCAAGGCCTGATTTTCCTCAGGCATTACATAGGATTTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCAGCTTCCCAAGGCCTGATTTTCCTCAGGCATTACATAGGATTTG  587

seq1  TTTTCTAGCTGCCAGAGAAGGTAGCTAAAGGTAATTTATGTTAATTTTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAGCTGCCAGAGAAGGTAGCTAAAGGTAATTTATGTTAATTTTTT  637

seq1  TCCTTTCTGGCCCATTAACTTTTGTGATGTTAATATAATATGTGGAGCCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTGGCCCATTAACTTTTGTGATGTTAATATAATATGTGGAGCCT  687

seq1  CCTGTTAGCACAAGCCCTTACATCCATAGCATGCTGCTGGGGGTGGGGTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTAGCACAAGCCCTTACATCCATAGCATGCTGCTGGGGGTGGGGTT  737

seq1  GGGGGTGGGGGTGGGGGTGGGGGTGGGAGAGCTGTTCCTACAGTACCAGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTGGGGGTGGGGGTGGGGGTGGGAGAGCTGTTCCTACAGTACCAGG  787

seq1  ACCCTGGGACCCTGGGTTTGCTCCAACTGCCTGCAGGGATGCTCTATTGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGGACCCTGGGTTTGCTCCAACTGCCTGCAGGGATGCTCTATTGC  837

seq1  AGACAGGAGAGGGTGTGGGAGGATGTAGCTTTGACTACTTCAACTGAAAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGAGAGGGTGTGGGAGGATGTAGCTTTGACTACTTCAACTGAAAG  887

seq1  TGGGTTTTGTGTGTGTGTGGTGTGTGTGTGTTCACACCACATTACAGAGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTTGTGTGTGTGTGGTGTGTGTGTGTTCACACCACATTACAGAGG  937

seq1  AGTGTTCATCTCAACAGTAGGTCCTGAAACTTCCCTGTGAGCAAAGAATC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCATCTCAACAGTAGGTCCTGAAACTTCCCTGTGAGCAAAGAATC  987

seq1  CCTAAACAGGTTCTATCCAGGGTACTTCCTTGTATTTGGTAGAATGTACT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAACAGGTTCTATCCAGGGTACTTCCTTGTATTTGGTAGAATGTACT  1037

seq1  GAAGGTGTGGGTGGAGATTCTGAAACCTGGGGAGTAGCAAACAACTTTGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGTGGGTGGAGATTCTGAAACCTGGGGAGTAGCAAACAACTTTGT  1087

seq1  GAGCATCTATAACATTAAATTTCCATCCTAAGGGGCCATGGTATGGAATT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATCTATAACATTAAATTTCCATCCTAAGGGGCCATGGTATGGAATT  1137

seq1  C  1148
      |
seq2  C  1138

seq1: chr18_35043724_35044795
seq2: B6Ng01-136L17.g_68_1138

seq1  GAATTCTATCTAACCCTTACCTCTGCTGCTTCAGGATTAGTTGATGGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCTAACCCTTACCTCTGCTGCTTCAGGATTAGTTGATGGCAG  50

seq1  GTGTATTCCCTGAAACCGGCACACAAAAGTAAGTTCTCTTACACTGGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTCCCTGAAACCGGCACACAAAAGTAAGTTCTCTTACACTGGGCA  100

seq1  ACACCCCCACCCTTGAACCGCATCTTAAAAACTTTGAAAAGTTTGTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCCCACCCTTGAACCGCATCTTAAAAACTTTGAAAAGTTTGTTTGT  150

seq1  TTATATTTGTTTATTTATTTATTTACTGTGGGTAGGTGTACCGCAGTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTGTTTATTTATTTATTTACTGTGGGTAGGTGTACCGCAGTGTA  200

seq1  CCTGGGCAGATCAACTTATGGGAACCAGTTCTTCCAGGAGAGTCCTGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCAGATCAACTTATGGGAACCAGTTCTTCCAGGAGAGTCCTGGGG  250

seq1  ATCAAACTTGGGTTCTCAGGCTCAGTGGCTTGTTACCTTTGGAGCAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACTTGGGTTCTCAGGCTCAGTGGCTTGTTACCTTTGGAGCAAGAC  300

seq1  ATCCTGACAGTTGAATGACATCAGGAAAGGGCAGGAGAGGGAAGGAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGACAGTTGAATGACATCAGGAAAGGGCAGGAGAGGGAAGGAGGAG  350

seq1  GAGAGCTGGGGAACTCTGCTTCCTGAGAGCCGCCTCTCCATCCTTCAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTGGGGAACTCTGCTTCCTGAGAGCCGCCTCTCCATCCTTCAATC  400

seq1  CAGCACCTGCTGCTGAGCTCTGCCTGGGGCTCCTTTTAGAGACTTCTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCTGCTGCTGAGCTCTGCCTGGGGCTCCTTTTAGAGACTTCTGAA  450

seq1  ATCCCGTGAGGATCCGCATCAGTCTTCCCACGTACAATGGTGGCACTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCGTGAGGATCCGCATCAGTCTTCCCACGTACAATGGTGGCACTTGA  500

seq1  CGCCAAAGTCTTCCCAGCCAGCGAGAGAAATGGAAGTTTCCTCCGGTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAAAGTCTTCCCAGCCAGCGAGAGAAATGGAAGTTTCCTCCGGTTCT  550

seq1  CCGAGTCTATCTTCCCCTCCCTTTTGCGGGGGAGCTGACTGCTCTCTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTCTATCTTCCCCTCCCTTTTGCGGGGGAGCTGACTGCTCTCTGGA  600

seq1  GGGACCGAGGGAAGCCGCTGGGCTGGCTCTAATGTGATTTTGCCTAGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCGAGGGAAGCCGCTGGGCTGGCTCTAATGTGATTTTGCCTAGATG  650

seq1  GAGCTGGCAGCTGGGAACCACTTTCCCTCGGCTTGCCCTCTGCTGGGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGCAGCTGGGAACCACTTTCCCTCGGCTTGCCCTCTGCTGGGAAT  700

seq1  CTCCATGACGGAGACAGCTGGCTTGAGGCTGCTGGGGCTGCTTTCGAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGACGGAGACAGCTGGCTTGAGGCTGCTGGGGCTGCTTTCGAGCC  750

seq1  AGAAAGGGCCACACAGGAACTTTCAGGCCAGAGACAGATGCTGGGGCCAC  800
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGAAAGGGCCACACAGGAACTTTCA-GCCAGAGACAGATGCTGGGGCCAC  799

seq1  CATTCTTTCTTGAGCAATCCCGTGAGAGACAATGCTTT-GGGGGAAGGTT  849
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CATTCTTTCTTGAGCAATCCCGTGAGAGACAATGCTTTGGGGGGAAGGTT  849

seq1  GGCTTGCTCCAAGCACAGAAGCAAATACAAATTAAAAATAATAGAGGAGG  899
      ||||||||| | || ||||||| |||||||||||||||||||||||||||
seq2  GGCTTGCTCTAGGCCCAGAAGC-AATACAAATTAAAAATAATAGAGGAGG  898

seq1  AGAAGCAGACAGAACGGAGAGTGAGACCTCACAGTAAGGACTTGGAGCAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGACAGAACGGAGAGTGAGACCTCACAGTAAGGACTTGGAGCAG  948

seq1  CAGTTCTGAAA-GCCTAGTGT-GGGTGCTAGAACCGTGTGATCCTTGGTC  997
      || |||||||| ||| | ||| ||||||||| | || ||||||| |||||
seq2  CA-TTCTGAAAGGCCAAATGTGGGGTGCTAG-ATCGGGTGATCC-TGGTC  995

seq1  ATGCTTTTTAAGATGTTAGC-CTGAATTCTAACTTCCCCATTTCTTTCTT  1046
      |||||||||||||||||||| | |||||||||||| ||||||||||||||
seq2  ATGCTTTTTAAGATGTTAGCTCGGAATTCTAACTTTCCCATTTCTTTCTT  1045

seq1  TCTTTTTTTTTTTGGGGGGGGTGGGG  1072
      || ||||||||| |||||||||||||
seq2  TCCTTTTTTTTTGGGGGGGGGTGGGG  1071