BAC Information

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BAC

Clone NameB6Ng01-136M16
Chromosome18 (Build37)
Map Location 56,359,799 - 56,523,315
singlet/doubletdoublet
Overlap geneLOC676543
Upstream geneLOC667401, LOC667409, LOC629043, LOC100043099, LOC629057, LOC100043104
Downstream geneLOC667432, Gramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171, Lmnb1, March3, C330018D20Rik, Megf10, LOC672445, Prrc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136M16.bB6Ng01-136M16.g
ACCDH936472DH936473
length1,137870
definitionDH936472|Mus musculus domesticus DNA, BAC clone: B6Ng01-136M16, 5' end.DH936473|Mus musculus domesticus DNA, BAC clone: B6Ng01-136M16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,522,170 - 56,523,315)(56,359,799 - 56,360,436)
sequence
gaattcaataatttggaagtctcttgcacacatgatcctggcacgtgaga
agtgaggcaggaggatcaggtgtttaagatcatcctcggatactgaattt
caggccaggctgggttactggagaccccctcctcaataaacagagaggag
gggactagacaggtgacccagcagtttagagcactggctgttcgtcctga
ggatctgagttcaattcctagcactgacatggcagtgcacagctgtctgt
aactctagttccaggggatctgatgtcctcacacagttcttttgacctgt
ggtactgtatgtacggttgggattctagactacaaatctcatctaggatt
tccattacaaaagtagcgtgactagaatacctggggacctataataggct
aataacagttaaggctacttcactaaaataccttttagataattttaatc
cttcttagttcatactctgaatactgtcaataactgagcattttaaacag
agatgggctatttcagagtgaatgacgttaacagcatcgacaataaattc
aagtaacaatagttaaaaatcataaagaacaatgtgggataatatgtaga
aagcatgtaggttgatttgacattggaccaagataatttttcattaaaca
agacttcagttgcaaggtcagagttcctttagtgttacaatgctgccacc
tggtggttatagcactttactgcagtagtgtttgtggctgttgcattggt
gacaggttagaattttctgtccagtctcccagaacaattatttgcagtct
tatctaagactgagtagtaatctatttcccacaaaagatacatttcacag
acatctttcatatctttacactccaattcccttcacaggatcacgggtga
tgaacgagaggtacaaccacgacggcttttctctctgctccagttagtag
attcaaagccccgctttgctagctcggcagtgtggacagcttgatctaac
agttgacatttcaatgtgagttaagtttgggggacagttcgggagcttag
aaatataaactcagcgtggttatggttcagtggccaagctagaaaataga
actggtccatttgcgaggggagcagccgaagatctga
gaattcagagtcagagaaatgcagtcatagcatgctacaagtcttgatag
caaaataataataacaacaacaacaataataataatgataataataatga
tgatgactattatatgcatagtaatacaaagattgatttttttcacttca
aaatcataaaacagaaaaccaaaaaatatagctgtaattgcaaaacagaa
ttaaatgttatcaacctcaaccatatgaagcaaaaattaatctgatgaaa
agtagaaagagagaggaaatgggagcaggactaattttccatctttttta
aatatatttttattaggtattttcctcaattacatttccaatgctatccc
aaaagtcccacataccctcccccccccacgcccctacccacccactccca
ctttttggccctggcattcccctgtactgggacatataaagtttgcatgt
ccaatgggcctctctttccactgatggccgactaggccatcttttgatac
atatgcagctagagacaagagctctactggttagttcataatgttgttgc
acctatagggttgcagaacccgttagctccttggatatgttctctagctc
ctccattgggggtcctgtgatccatccaatagctgactgtgagcacatcc
acttatgtgtttgctaggccccagcatagtctcacaagagacagctatat
cagggtccttttagcaaaatcttgctagtgtatgcaatggtgtcatcgtt
tggaggctgattatgggatggatccctggatatggcagtctctagatggt
ccatccttttctctcagctccaacttttgtctctgtaactccttccatgg
gtgttgtgttcccaatctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_56522170_56523315
seq2: B6Ng01-136M16.b_45_1181 (reverse)

seq1  TCAGATCTTTCTGGCCTGCTCTACACTCGCAAATTGTACCAGGTCTTATT  50
      ||||||||   | | ||||||  | |||||||| || ||||| || ||||
seq2  TCAGATCT---TCGGCTGCTC--CCCTCGCAAA-TGGACCAGTTC-TATT  43

seq1  TTCTATGCTCTGCCACTGAACCATAACCACGCCCTGAGTTTATATTTCTA  100
      ||||| |||  ||||||||||||||||||||  |||||||||||||||||
seq2  TTCTA-GCTTGGCCACTGAACCATAACCACG--CTGAGTTTATATTTCTA  90

seq1  AGCTCCCCGACTGTCCCCCAAACTTAACTCACATTGAAATGTCAACTGTT  150
      |||||||  |||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCGAACTGTCCCCCAAACTTAACTCACATTGAAATGTCAACTGTT  140

seq1  AGATCAAGCTGTCCACACTGCCGAGCTAGCAAAGC-GGGCTTTGATTCTA  199
      ||||||||||||||||||||||||||||||||||| ||||||||| ||||
seq2  AGATCAAGCTGTCCACACTGCCGAGCTAGCAAAGCGGGGCTTTGAATCTA  190

seq1  CTAACTGGAGCAGAGAGAAAAGCCGTCGTGGTTGTACCTCTCGTTCATCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGGAGCAGAGAGAAAAGCCGTCGTGGTTGTACCTCTCGTTCATCA  240

seq1  CCCGTGATCCTGTGAAGGGAATTGGAGTGTAAAGATATGAAAGATGTCTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTGATCCTGTGAAGGGAATTGGAGTGTAAAGATATGAAAGATGTCTG  290

seq1  TGAAATGTATCTTTTGTGGGAAATAGATTACTACTCAGTCTTAGATAAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGTATCTTTTGTGGGAAATAGATTACTACTCAGTCTTAGATAAGA  340

seq1  CTGCAAATAATTGTTCTGGGAGACTGGACAGAAAATTCTAACCTGTCACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAATAATTGTTCTGGGAGACTGGACAGAAAATTCTAACCTGTCACC  390

seq1  AATGCAACAGCCACAAACACTACTGCAGTAAAGTGCTATAACCACCAGGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAACAGCCACAAACACTACTGCAGTAAAGTGCTATAACCACCAGGT  440

seq1  GGCAGCATTGTAACACTAAAGGAACTCTGACCTTGCAACTGAAGTCTTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCATTGTAACACTAAAGGAACTCTGACCTTGCAACTGAAGTCTTGT  490

seq1  TTAATGAAAAATTATCTTGGTCCAATGTCAAATCAACCTACATGCTTTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGAAAAATTATCTTGGTCCAATGTCAAATCAACCTACATGCTTTCT  540

seq1  ACATATTATCCCACATTGTTCTTTATGATTTTTAACTATTGTTACTTGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTATCCCACATTGTTCTTTATGATTTTTAACTATTGTTACTTGAA  590

seq1  TTTATTGTCGATGCTGTTAACGTCATTCACTCTGAAATAGCCCATCTCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGTCGATGCTGTTAACGTCATTCACTCTGAAATAGCCCATCTCTG  640

seq1  TTTAAAATGCTCAGTTATTGACAGTATTCAGAGTATGAACTAAGAAGGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATGCTCAGTTATTGACAGTATTCAGAGTATGAACTAAGAAGGAT  690

seq1  TAAAATTATCTAAAAGGTATTTTAGTGAAGTAGCCTTAACTGTTATTAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTATCTAAAAGGTATTTTAGTGAAGTAGCCTTAACTGTTATTAGC  740

seq1  CTATTATAGGTCCCCAGGTATTCTAGTCACGCTACTTTTGTAATGGAAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATAGGTCCCCAGGTATTCTAGTCACGCTACTTTTGTAATGGAAAT  790

seq1  CCTAGATGAGATTTGTAGTCTAGAATCCCAACCGTACATACAGTACCACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGATGAGATTTGTAGTCTAGAATCCCAACCGTACATACAGTACCACA  840

seq1  GGTCAAAAGAACTGTGTGAGGACATCAGATCCCCTGGAACTAGAGTTACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAAAGAACTGTGTGAGGACATCAGATCCCCTGGAACTAGAGTTACA  890

seq1  GACAGCTGTGCACTGCCATGTCAGTGCTAGGAATTGAACTCAGATCCTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTGTGCACTGCCATGTCAGTGCTAGGAATTGAACTCAGATCCTCA  940

seq1  GGACGAACAGCCAGTGCTCTAAACTGCTGGGTCACCTGTCTAGTCCCCTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGAACAGCCAGTGCTCTAAACTGCTGGGTCACCTGTCTAGTCCCCTC  990

seq1  CTCTCTGTTTATTGAGGAGGGGGTCTCCAGTAACCCAGCCTGGCCTGAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTTTATTGAGGAGGGGGTCTCCAGTAACCCAGCCTGGCCTGAAA  1040

seq1  TTCAGTATCCGAGGATGATCTTAAACACCTGATCCTCCTGCCTCACTTCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTATCCGAGGATGATCTTAAACACCTGATCCTCCTGCCTCACTTCT  1090

seq1  CACGTGCCAGGATCATGTGTGCAAGAGACTTCCAAATTATTGAATTC  1146
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGCCAGGATCATGTGTGCAAGAGACTTCCAAATTATTGAATTC  1137

seq1: chr18_56359799_56360436
seq2: B6Ng01-136M16.g_71_708

seq1  GAATTCAGAGTCAGAGAAATGCAGTCATAGCATGCTACAAGTCTTGATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGTCAGAGAAATGCAGTCATAGCATGCTACAAGTCTTGATAG  50

seq1  CAAAATAATAATAACAACAACAACAATAATAATAATGATAATAATAATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAATAATAACAACAACAACAATAATAATAATGATAATAATAATGA  100

seq1  TGATGACTATTATATGCATAGTAATACAAAGATTGATTTTTTTCACTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACTATTATATGCATAGTAATACAAAGATTGATTTTTTTCACTTCA  150

seq1  AAATCATAAAACAGAAAACCAAAAAATATAGCTGTAATTGCAAAACAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATAAAACAGAAAACCAAAAAATATAGCTGTAATTGCAAAACAGAA  200

seq1  TTAAATGTTATCAACCTCAACCATATGAAGCAAAAATTAATCTGATGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGTTATCAACCTCAACCATATGAAGCAAAAATTAATCTGATGAAA  250

seq1  AGTAGAAAGAGAGAGGAAATGGGAGCAGGACTAATTTTCCATCTTTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAAGAGAGAGGAAATGGGAGCAGGACTAATTTTCCATCTTTTTTA  300

seq1  AATATATTTTTATTAGGTATTTTCCTCAATTACATTTCCAATGCTATCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTTTTATTAGGTATTTTCCTCAATTACATTTCCAATGCTATCCC  350

seq1  AAAAGTCCCACATACCCTCCCCCCCCCACGCCCCTACCCACCCACTCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCCCACATACCCTCCCCCCCCCACGCCCCTACCCACCCACTCCCA  400

seq1  CTTTTTGGCCCTGGCATTCCCCTGTACTGGGACATATAAAGTTTGCATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGGCCCTGGCATTCCCCTGTACTGGGACATATAAAGTTTGCATGT  450

seq1  CCAATGGGCCTCTCTTTCCACTGATGGCCGACTAGGCCATCTTTTGATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGGGCCTCTCTTTCCACTGATGGCCGACTAGGCCATCTTTTGATAC  500

seq1  ATATGCAGCTAGAGACAAGAGCTCTACTGGTTAGTTCATAATGTTGTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCAGCTAGAGACAAGAGCTCTACTGGTTAGTTCATAATGTTGTTGC  550

seq1  ACCTATAGGGTTGCAGAACCCGTTAGCTCCTTGGATATGTTCTCTAGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATAGGGTTGCAGAACCCGTTAGCTCCTTGGATATGTTCTCTAGCTC  600

seq1  CTCCATTGGGGGTCCTGTGATCCATCCAATAGCTGACT  638
      ||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTGGGGGTCCTGTGATCCATCCAATAGCTGACT  638